Wall clock time and date at job start Wed Apr 1 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35832 * 118.70372 * 2 1 4 4 C 1.40839 * 120.55694 * 179.97438 * 3 2 1 5 5 C 1.38425 * 134.89281 * 180.02562 * 4 3 2 6 6 N 1.33897 * 107.84075 * 180.02562 * 5 4 3 7 7 H 0.97001 * 125.01575 * 179.97438 * 6 5 4 8 8 N 1.39974 * 109.96101 * 0.26375 * 6 5 4 9 9 C 1.31479 * 109.01734 * 359.54180 * 8 6 5 10 10 C 1.46669 * 134.99187 * 180.02562 * 9 8 6 11 11 C 1.47167 * 120.72838 * 0.42287 * 10 9 8 12 12 O 1.21647 * 119.99417 * 359.95474 * 11 10 9 13 13 N 1.34772 * 120.00585 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00233 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47305 * 35.00068 * 14 13 11 16 16 C 1.52999 * 109.47287 * 274.99795 * 14 13 11 17 17 C 1.53002 * 109.47115 * 155.00119 * 14 13 11 18 18 C 1.53003 * 109.46947 * 295.00097 * 17 14 13 19 19 C 1.53002 * 109.46947 * 179.97438 * 18 17 14 20 20 C 1.53003 * 109.46947 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.46968 * 179.97438 * 20 19 18 22 22 C 1.36932 * 119.99711 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00276 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99577 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99676 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00162 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47556 * 89.99667 * 26 24 22 28 28 H 1.48506 * 109.47330 * 209.99492 * 26 24 22 29 29 H 1.48494 * 109.47490 * 329.99451 * 26 24 22 30 30 C 1.38590 * 118.55171 * 180.38132 * 10 9 8 31 31 H 1.09001 * 109.46765 * 89.99901 * 1 2 3 32 32 H 1.08994 * 109.47562 * 209.99724 * 1 2 3 33 33 H 1.09000 * 109.47387 * 330.00381 * 1 2 3 34 34 H 1.08004 * 119.71976 * 0.02562 * 3 2 1 35 35 H 1.07994 * 126.07982 * 359.97438 * 5 4 3 36 36 H 0.97006 * 119.99435 * 0.02562 * 13 11 10 37 37 H 1.09006 * 109.46744 * 60.00042 * 16 14 13 38 38 H 1.09000 * 109.47598 * 180.02562 * 16 14 13 39 39 H 1.09001 * 109.47593 * 300.00497 * 16 14 13 40 40 H 1.09005 * 109.47217 * 54.99613 * 17 14 13 41 41 H 1.08994 * 109.47181 * 174.99812 * 17 14 13 42 42 H 1.08993 * 109.47157 * 299.99929 * 18 17 14 43 43 H 1.09003 * 109.46857 * 59.99917 * 18 17 14 44 44 H 1.09005 * 109.47217 * 299.99515 * 19 18 17 45 45 H 1.08994 * 109.47181 * 59.99715 * 19 18 17 46 46 H 1.08993 * 109.47157 * 299.99929 * 20 19 18 47 47 H 1.09003 * 109.46857 * 59.99917 * 20 19 18 48 48 H 0.96997 * 119.99674 * 359.97438 * 21 20 19 49 49 H 0.97007 * 120.00250 * 180.02562 * 25 24 22 50 50 H 1.07998 * 119.32044 * 180.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1914 0.0000 4 6 3.5670 1.2369 0.0005 5 6 4.5118 2.2487 0.0011 6 7 5.7233 1.6786 0.0009 7 1 6.5652 2.1604 0.0008 8 7 5.5956 0.2847 -0.0059 9 6 4.3186 -0.0285 0.0000 10 6 3.5586 -1.2829 -0.0018 11 6 4.2509 -2.5816 -0.0031 12 8 5.4667 -2.6226 -0.0034 13 7 3.5380 -3.7253 -0.0042 14 6 4.2272 -5.0180 -0.0060 15 1 5.1411 -4.9434 0.5833 16 6 4.5776 -5.4073 -1.4435 17 6 3.3137 -6.0839 0.6026 18 6 3.0642 -5.7602 2.0771 19 6 2.1501 -6.8256 2.6855 20 6 1.9011 -6.5023 4.1601 21 7 1.0254 -7.5222 4.7426 22 6 0.6625 -7.4414 6.0605 23 1 1.0215 -6.6256 6.6704 24 6 -0.1677 -8.4075 6.6122 25 7 -0.5161 -8.3301 7.8790 26 14 -0.7892 -9.8180 5.5571 27 1 0.1669 -10.9518 5.6331 28 1 -2.1187 -10.2577 6.0515 29 1 -0.9100 -9.3661 4.1477 30 6 2.1742 -1.2186 -0.0015 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.5938 2.1115 0.0004 35 1 4.3079 3.3092 0.0009 36 1 2.5685 -3.6925 -0.0046 37 1 5.2284 -4.6479 -1.8771 38 1 5.0900 -6.3693 -1.4449 39 1 3.6637 -5.4819 -2.0329 40 1 2.3639 -6.0969 0.0678 41 1 3.7902 -7.0607 0.5207 42 1 4.0138 -5.7471 2.6119 43 1 2.5876 -4.7833 2.1589 44 1 1.2004 -6.8382 2.1506 45 1 2.6262 -7.8026 2.6035 46 1 2.8508 -6.4900 4.6947 47 1 1.4251 -5.5251 4.2424 48 1 0.7027 -8.2546 4.1946 49 1 -1.0960 -9.0054 8.2648 50 1 1.6022 -2.1346 -0.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175703488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:51 Heat of formation + Delta-G solvation = 22.999497 kcal Electronic energy + Delta-G solvation = -28944.461430 eV Core-core repulsion = 24971.642124 eV Total energy + Delta-G solvation = -3972.819306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.23681 -40.76770 -38.42923 -37.98619 -36.90203 -34.78816 -33.72545 -33.14514 -32.35933 -31.71236 -30.61021 -29.04539 -27.30494 -25.92583 -25.48452 -23.85018 -23.06803 -22.14325 -22.01867 -21.55769 -20.94667 -19.61398 -19.13673 -18.27264 -17.69820 -17.18665 -16.62977 -16.32572 -16.15837 -15.86303 -15.75602 -15.53420 -15.26648 -15.08511 -14.86429 -14.61188 -14.29829 -14.24093 -14.16306 -14.03185 -13.54058 -13.06625 -13.04261 -12.95830 -12.92702 -12.81162 -12.52599 -12.46454 -12.26654 -12.18577 -12.05825 -11.87920 -11.76263 -11.57067 -11.48513 -11.43056 -11.19312 -10.97113 -10.77050 -10.09663 -9.81678 -9.31046 -8.54278 -8.03576 -5.37955 -0.64735 0.80478 1.16773 1.38263 1.43303 1.50859 1.81628 2.04271 2.21737 2.49001 2.86940 3.26161 3.27263 3.48002 3.58364 3.82396 3.92123 4.02456 4.08159 4.11275 4.19678 4.34400 4.39137 4.43152 4.45877 4.54744 4.59246 4.64385 4.72525 4.77406 4.88030 4.91522 4.98109 4.99965 5.02115 5.05533 5.12542 5.16307 5.25562 5.31826 5.33386 5.40532 5.44240 5.50983 5.61959 5.66240 5.74054 5.89624 6.20663 6.26302 6.57652 6.64982 7.07220 7.31497 7.83090 8.04397 9.18128 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002085 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.133027 B =13427.055146 C =14503.737754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.162 4.162 3 C 0.007 3.993 4 C -0.248 4.248 5 C 0.130 3.870 6 N -0.424 5.424 7 H 0.459 0.541 8 N -0.343 5.343 9 C 0.108 3.892 10 C -0.170 4.170 11 C 0.556 3.444 12 O -0.578 6.578 13 N -0.710 5.710 14 C 0.143 3.857 15 H 0.061 0.939 16 C -0.156 4.156 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.114 4.114 20 C 0.149 3.851 21 N -0.760 5.760 22 C -0.242 4.242 23 H 0.050 0.950 24 C -0.069 4.069 25 N -0.985 5.985 26 Si 0.963 3.037 27 H -0.278 1.278 28 H -0.293 1.293 29 H -0.246 1.246 30 C -0.001 4.001 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.249 0.751 36 H 0.410 0.590 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.013 0.987 47 H 0.020 0.980 48 H 0.368 0.632 49 H 0.259 0.741 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 24.151 -27.337 36.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.163 4.163 3 C -0.013 4.013 4 C -0.258 4.258 5 C -0.029 4.029 6 N -0.125 5.125 7 H 0.306 0.694 8 N -0.170 5.170 9 C -0.050 4.050 10 C -0.177 4.177 11 C 0.345 3.655 12 O -0.459 6.459 13 N -0.363 5.363 14 C 0.039 3.961 15 H 0.079 0.921 16 C -0.214 4.214 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.152 4.152 20 C 0.023 3.977 21 N -0.406 5.406 22 C -0.373 4.373 23 H 0.068 0.932 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.789 3.211 27 H -0.204 1.204 28 H -0.220 1.220 29 H -0.171 1.171 30 C -0.023 4.023 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.182 0.818 35 H 0.265 0.735 36 H 0.248 0.752 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.031 0.969 47 H 0.038 0.962 48 H 0.201 0.799 49 H 0.068 0.932 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.341 23.703 -27.142 36.775 hybrid contribution -0.670 -0.384 0.356 0.850 sum 6.672 23.319 -26.786 36.136 Atomic orbital electron populations 1.20803 0.88595 1.03812 1.03119 1.19401 0.97894 0.91959 1.07081 1.20620 0.90273 0.99185 0.91204 1.20045 0.96023 0.91073 1.18651 1.23718 0.83497 1.00914 0.94767 1.46607 1.09701 1.05019 1.51150 0.69402 1.77746 1.17966 0.90294 1.30947 1.21890 0.90691 0.94646 0.97730 1.19871 0.93216 0.88981 1.15632 1.18292 0.86741 0.84720 0.75726 1.90786 1.15338 1.88113 1.51682 1.45900 1.10594 1.04859 1.74906 1.20980 0.95860 0.82140 0.97113 0.92105 1.22107 1.02169 1.01569 0.95538 1.21843 1.00554 0.98280 0.94470 1.21443 0.98984 0.98487 0.95816 1.21652 1.00534 0.99639 0.93394 1.20844 0.92009 0.91110 0.93694 1.42738 1.59371 1.30114 1.08347 1.19059 1.23454 1.07765 0.86982 0.93175 1.25640 1.00720 1.02236 0.97412 1.69907 1.41608 1.38079 1.13975 0.85288 0.77297 0.79067 0.79408 1.20371 1.21976 1.17061 1.21487 0.91037 0.99858 0.89931 0.90384 0.91308 0.90305 0.81787 0.73468 0.75186 0.94654 0.90281 0.90747 0.89081 0.89078 0.93119 0.91804 0.90705 0.91489 0.96882 0.96162 0.79854 0.93236 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.93 71.24 0.71 -0.12 16 2 C -0.16 -2.14 5.82 -20.26 -0.12 -2.26 16 3 C 0.01 0.09 9.58 22.35 0.21 0.30 16 4 C -0.25 -4.06 6.34 -20.25 -0.13 -4.19 16 5 C 0.13 1.13 12.08 84.42 1.02 2.15 16 6 N -0.42 -6.02 7.18 -56.29 -0.40 -6.43 16 7 H 0.46 2.91 8.96 -213.40 -1.91 1.00 16 8 N -0.34 -9.56 12.24 -45.23 -0.55 -10.11 16 9 C 0.11 2.84 7.27 43.75 0.32 3.16 16 10 C -0.17 -4.28 6.05 -18.65 -0.11 -4.39 16 11 C 0.56 15.98 7.73 86.59 0.67 16.65 16 12 O -0.58 -22.00 15.99 -4.18 -0.07 -22.07 16 13 N -0.71 -14.84 4.48 -446.05 -2.00 -16.84 16 14 C 0.14 2.96 2.57 44.99 0.12 3.08 16 15 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 16 C -0.16 -2.84 9.48 71.98 0.68 -2.16 16 17 C -0.11 -1.94 4.75 30.60 0.15 -1.79 16 18 C -0.11 -2.50 5.10 30.60 0.16 -2.35 16 19 C -0.11 -3.16 5.33 30.60 0.16 -3.00 16 20 C 0.15 5.89 6.26 86.38 0.54 6.43 16 21 N -0.76 -36.79 5.41 -343.44 -1.86 -38.64 16 22 C -0.24 -14.39 10.47 84.04 0.88 -13.51 16 23 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.99 -64.56 13.97 21.65 0.30 -64.26 16 26 Si 0.96 45.81 27.73 68.60 1.90 47.71 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 30 C 0.00 -0.01 9.08 22.52 0.20 0.19 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.55 8.06 -2.39 -0.02 0.53 16 33 H 0.08 0.43 8.04 -2.39 -0.02 0.41 16 34 H 0.16 0.62 8.04 -2.91 -0.02 0.60 16 35 H 0.25 -1.03 8.06 -2.91 -0.02 -1.05 16 36 H 0.41 6.03 6.65 -92.70 -0.62 5.41 16 37 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16 44 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.37 16.54 5.53 -92.71 -0.51 16.03 16 49 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 50 H 0.15 1.69 6.37 -2.91 -0.02 1.67 16 Total: -1.00 -93.92 412.06 1.12 -92.80 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -2.13 Total: 23.35 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.93 Total: -5.51 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -4.51 Total: -136.28 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.07 Total: -22.07 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -93.92 1.12 -92.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175703488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.796 kcal (2) G-P(sol) polarization free energy of solvation -93.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds