Wall clock time and date at job start Wed Apr 1 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34840 * 119.67844 * 2 1 4 4 C 1.40581 * 120.34180 * 179.97438 * 3 2 1 5 5 C 1.35892 * 119.72867 * 0.02562 * 4 3 2 6 6 C 1.41195 * 119.34877 * 359.97438 * 5 4 3 7 7 N 1.32230 * 132.04547 * 179.68525 * 6 5 4 8 8 C 1.34589 * 109.02195 * 179.88958 * 7 6 5 9 9 C 1.47590 * 125.91956 * 180.16101 * 8 7 6 10 10 O 1.21595 * 119.99940 * 180.28110 * 9 8 7 11 11 N 1.34776 * 119.99847 * 0.27943 * 9 8 7 12 12 C 1.46508 * 119.99888 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46768 * 35.00318 * 12 11 9 14 14 C 1.52993 * 109.47175 * 275.00105 * 12 11 9 15 15 C 1.52997 * 109.46854 * 155.00135 * 12 11 9 16 16 C 1.53001 * 109.47384 * 295.00021 * 15 12 11 17 17 C 1.52997 * 109.47384 * 179.97438 * 16 15 12 18 18 C 1.53001 * 109.47384 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47246 * 180.02562 * 18 17 16 20 20 C 1.36937 * 120.00086 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99633 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00316 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46747 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46889 * 120.00257 * 24 22 20 27 27 H 1.48495 * 109.47469 * 240.00238 * 24 22 20 28 28 C 1.36573 * 108.15910 * 0.39894 * 8 7 6 29 29 N 1.36192 * 107.09928 * 359.76197 * 28 8 7 30 30 H 1.08992 * 109.47113 * 90.00023 * 1 2 3 31 31 H 1.09004 * 109.46739 * 210.00092 * 1 2 3 32 32 H 1.08996 * 109.46872 * 329.99214 * 1 2 3 33 33 H 1.07997 * 119.83219 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.13618 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.32932 * 179.97438 * 5 4 3 36 36 H 0.96994 * 120.00312 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47480 * 300.00287 * 14 12 11 38 38 H 1.09009 * 109.47045 * 60.00277 * 14 12 11 39 39 H 1.09000 * 109.47257 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47258 * 55.00287 * 15 12 11 41 41 H 1.08999 * 109.47064 * 175.00387 * 15 12 11 42 42 H 1.09002 * 109.47140 * 300.00338 * 16 15 12 43 43 H 1.09000 * 109.47245 * 60.00122 * 16 15 12 44 44 H 1.08995 * 109.47305 * 300.00631 * 17 16 15 45 45 H 1.09007 * 109.46818 * 60.00539 * 17 16 15 46 46 H 1.09002 * 109.47140 * 300.00338 * 18 17 16 47 47 H 1.08999 * 109.46722 * 60.00156 * 18 17 16 48 48 H 0.97000 * 120.00101 * 0.02562 * 19 18 17 49 49 H 0.96996 * 120.00066 * 179.97438 * 23 22 20 50 50 H 1.08007 * 126.44958 * 179.75827 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5804 1.1878 0.0005 5 6 4.2679 0.0156 0.0005 6 6 3.5564 -1.2040 0.0005 7 7 3.9583 -2.4637 -0.0049 8 6 2.8795 -3.2684 0.0005 9 6 2.9000 -4.7441 0.0005 10 8 1.8555 -5.3667 0.0005 11 7 4.0765 -5.4016 0.0005 12 6 4.0969 -6.8666 0.0010 13 1 3.2601 -7.2418 -0.5881 14 6 3.9786 -7.3777 1.4382 15 6 5.4111 -7.3585 -0.6087 16 6 5.4726 -6.9534 -2.0828 17 6 6.7871 -7.4447 -2.6924 18 6 6.8483 -7.0402 -4.1666 19 7 8.1067 -7.5112 -4.7504 20 6 8.3848 -7.2644 -6.0684 21 1 7.6766 -6.7222 -6.6773 22 6 9.5773 -7.7102 -6.6214 23 7 10.4407 -8.3706 -5.8791 24 14 9.9564 -7.3742 -8.4194 25 1 8.8321 -6.6200 -9.0296 26 1 11.2025 -6.5729 -8.5212 27 1 10.1361 -8.6620 -9.1366 28 6 1.7624 -2.4826 0.0005 29 7 2.1838 -1.1875 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6267 2.1022 -0.0004 34 1 4.1117 2.1280 0.0001 35 1 5.3479 0.0168 0.0005 36 1 4.9097 -4.9050 0.0008 37 1 4.8154 -7.0024 2.0274 38 1 3.0423 -7.0272 1.8726 39 1 3.9934 -8.4676 1.4386 40 1 6.2494 -6.9119 -0.0739 41 1 5.4653 -8.4441 -0.5277 42 1 4.6343 -7.3999 -2.6176 43 1 5.4184 -5.8678 -2.1639 44 1 7.6251 -6.9979 -2.1575 45 1 6.8417 -8.5304 -2.6114 46 1 6.0103 -7.4874 -4.7013 47 1 6.7935 -5.9546 -4.2480 48 1 8.7426 -7.9985 -4.2036 49 1 11.2738 -8.6825 -6.2657 50 1 0.7377 -2.8240 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176504085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:15 Heat of formation + Delta-G solvation = 40.370582 kcal Electronic energy + Delta-G solvation = -28640.706643 eV Core-core repulsion = 24668.640604 eV Total energy + Delta-G solvation = -3972.066040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.30656 -39.87075 -37.94759 -36.82259 -35.18670 -34.67381 -33.19233 -32.09878 -31.17609 -30.22468 -29.69858 -27.79833 -27.36971 -25.06463 -24.03585 -23.16619 -22.30803 -21.82017 -20.77428 -20.58737 -20.38966 -18.54574 -17.40127 -16.99060 -16.93755 -16.60602 -16.19595 -15.63454 -15.04815 -14.90503 -14.75162 -14.63105 -14.35613 -14.04059 -13.94912 -13.78726 -13.43772 -13.34212 -13.09289 -12.88506 -12.84804 -12.82293 -12.27828 -12.09170 -11.86943 -11.68172 -11.46077 -11.37380 -11.18992 -10.94071 -10.78001 -10.72982 -10.61819 -10.34530 -10.24062 -10.17039 -9.90703 -9.61234 -9.33779 -9.07379 -8.80603 -8.28174 -6.83908 -5.70093 -2.98048 0.16819 0.78592 1.73491 1.98737 2.92161 3.05002 3.34670 3.47456 3.52686 3.55370 3.63733 3.83657 4.16984 4.23612 4.52735 4.58136 4.67480 4.74717 4.77705 4.87610 4.90507 4.98805 5.03827 5.09484 5.17827 5.34334 5.35325 5.50027 5.53947 5.54819 5.61627 5.69029 5.70385 5.79009 5.86697 5.95888 5.98674 6.02469 6.05176 6.20102 6.32427 6.40506 6.45952 6.47504 6.54141 6.56564 6.98685 7.02561 7.19032 7.51385 7.76831 8.09110 8.49508 9.60109 10.20110 10.54889 11.53182 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.002007 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.186655 B =13946.535935 C =15981.786534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.086 3.914 3 C -0.141 4.141 4 C -0.097 4.097 5 C -0.080 4.080 6 C 0.231 3.769 7 N -0.462 5.462 8 C 0.008 3.992 9 C 0.603 3.397 10 O -0.540 6.540 11 N -0.703 5.703 12 C 0.140 3.860 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.020 4.020 29 N -0.362 5.362 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.410 0.590 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.362 19.678 20.096 35.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.016 4.016 3 C -0.162 4.162 4 C -0.121 4.121 5 C -0.100 4.100 6 C -0.015 4.015 7 N -0.184 5.184 8 C -0.125 4.125 9 C 0.388 3.612 10 O -0.417 6.417 11 N -0.354 5.354 12 C 0.036 3.964 13 H 0.108 0.892 14 C -0.221 4.221 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.213 4.213 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.155 4.155 29 N -0.034 5.034 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.246 0.754 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -21.359 18.917 19.911 34.792 hybrid contribution 0.152 0.564 -0.876 1.053 sum -21.206 19.481 19.034 34.518 Atomic orbital electron populations 1.20966 0.87680 1.04745 1.04208 1.20351 0.95318 0.83586 1.02392 1.20676 0.94841 0.96552 1.04103 1.21072 0.93648 0.98548 0.98841 1.20373 1.01019 0.87483 1.01113 1.20975 0.79941 0.94510 1.06057 1.70851 1.28535 0.98092 1.20878 1.20629 0.89234 0.94467 1.08205 1.16860 0.84149 0.84059 0.76167 1.90796 1.32214 1.67711 1.51011 1.45913 1.08575 1.07447 1.73454 1.21110 0.99654 0.78778 0.96849 0.89168 1.22179 1.02213 1.01434 0.96285 1.21935 0.95895 1.01973 0.96631 1.21526 0.98395 1.01224 0.94169 1.21717 0.96547 1.00981 0.97023 1.20654 0.89764 0.96336 0.90799 1.42403 1.18194 1.67580 1.09713 1.19308 1.01296 1.29110 0.86980 0.91203 1.24751 0.97148 1.01279 0.98164 1.69674 1.10328 1.43345 1.35063 0.86106 0.77770 0.77330 0.84968 1.20590 1.21893 1.21893 1.22518 1.01222 0.80274 1.11521 1.42730 1.08913 1.05616 1.46101 0.89468 0.90478 0.88987 0.83061 0.83682 0.82730 0.75389 0.92402 0.92277 0.91405 0.91231 0.90115 0.92022 0.91994 0.92097 0.92090 0.96595 0.96581 0.78351 0.93642 0.78937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 9.84 36.01 0.35 -0.03 16 2 C 0.09 0.54 6.78 -81.63 -0.55 -0.01 16 3 C -0.14 -0.67 9.58 -39.90 -0.38 -1.05 16 4 C -0.10 -0.51 10.06 -39.54 -0.40 -0.90 16 5 C -0.08 -0.62 10.11 -39.30 -0.40 -1.02 16 6 C 0.23 2.50 7.79 -156.04 -1.22 1.29 16 7 N -0.46 -5.90 11.01 -9.35 -0.10 -6.00 16 8 C 0.01 0.10 6.94 -83.44 -0.58 -0.48 16 9 C 0.60 8.08 7.79 -12.45 -0.10 7.99 16 10 O -0.54 -8.36 16.53 5.28 0.09 -8.27 16 11 N -0.70 -8.32 4.53 -54.83 -0.25 -8.57 16 12 C 0.14 1.55 2.57 -67.93 -0.17 1.38 16 13 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 14 C -0.16 -1.59 9.48 37.15 0.35 -1.24 16 15 C -0.13 -1.39 4.75 -26.73 -0.13 -1.52 16 16 C -0.11 -1.57 5.10 -26.73 -0.14 -1.71 16 17 C -0.12 -2.12 5.33 -26.73 -0.14 -2.26 16 18 C 0.15 3.30 6.26 -4.04 -0.03 3.27 16 19 N -0.74 -19.83 5.60 -59.91 -0.34 -20.17 16 20 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 23 N -0.93 -29.26 13.06 55.49 0.72 -28.53 16 24 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 C -0.02 -0.21 10.78 -16.22 -0.17 -0.38 16 29 N -0.36 -3.41 2.93 -58.17 -0.17 -3.58 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.26 7.46 -51.93 -0.39 -0.12 16 32 H 0.09 0.11 8.07 -51.93 -0.42 -0.31 16 33 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 34 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.41 4.64 8.30 -40.82 -0.34 4.30 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 49 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.19 1.57 7.77 -52.48 -0.41 1.16 16 LS Contribution 417.68 15.07 6.29 6.29 Total: -1.00 -36.51 417.68 -10.85 -47.36 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.13 Total: 7.74 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.94 Total: -4.42 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.13 Total: -66.84 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.51 -10.85 -47.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176504085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.731 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds