Wall clock time and date at job start Wed Apr 1 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34840 * 119.67844 * 2 1 4 4 C 1.40581 * 120.34180 * 179.97438 * 3 2 1 5 5 C 1.35892 * 119.72867 * 0.02562 * 4 3 2 6 6 C 1.41195 * 119.34877 * 359.97438 * 5 4 3 7 7 N 1.32230 * 132.04547 * 179.68525 * 6 5 4 8 8 C 1.34589 * 109.02195 * 179.88958 * 7 6 5 9 9 C 1.47590 * 125.91956 * 180.16101 * 8 7 6 10 10 O 1.21595 * 119.99940 * 180.28110 * 9 8 7 11 11 N 1.34776 * 119.99847 * 0.27943 * 9 8 7 12 12 C 1.46508 * 119.99888 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46768 * 35.00318 * 12 11 9 14 14 C 1.52993 * 109.47175 * 275.00105 * 12 11 9 15 15 C 1.52997 * 109.46854 * 155.00135 * 12 11 9 16 16 C 1.53001 * 109.47384 * 295.00021 * 15 12 11 17 17 C 1.52997 * 109.47384 * 179.97438 * 16 15 12 18 18 C 1.53001 * 109.47384 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47246 * 180.02562 * 18 17 16 20 20 C 1.36937 * 120.00086 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99633 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00316 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46747 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46889 * 120.00257 * 24 22 20 27 27 H 1.48495 * 109.47469 * 240.00238 * 24 22 20 28 28 C 1.36573 * 108.15910 * 0.39894 * 8 7 6 29 29 N 1.36192 * 107.09928 * 359.76197 * 28 8 7 30 30 H 1.08992 * 109.47113 * 90.00023 * 1 2 3 31 31 H 1.09004 * 109.46739 * 210.00092 * 1 2 3 32 32 H 1.08996 * 109.46872 * 329.99214 * 1 2 3 33 33 H 1.07997 * 119.83219 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.13618 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.32932 * 179.97438 * 5 4 3 36 36 H 0.96994 * 120.00312 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47480 * 300.00287 * 14 12 11 38 38 H 1.09009 * 109.47045 * 60.00277 * 14 12 11 39 39 H 1.09000 * 109.47257 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47258 * 55.00287 * 15 12 11 41 41 H 1.08999 * 109.47064 * 175.00387 * 15 12 11 42 42 H 1.09002 * 109.47140 * 300.00338 * 16 15 12 43 43 H 1.09000 * 109.47245 * 60.00122 * 16 15 12 44 44 H 1.08995 * 109.47305 * 300.00631 * 17 16 15 45 45 H 1.09007 * 109.46818 * 60.00539 * 17 16 15 46 46 H 1.09002 * 109.47140 * 300.00338 * 18 17 16 47 47 H 1.08999 * 109.46722 * 60.00156 * 18 17 16 48 48 H 0.97000 * 120.00101 * 0.02562 * 19 18 17 49 49 H 0.96996 * 120.00066 * 179.97438 * 23 22 20 50 50 H 1.08007 * 126.44958 * 179.75827 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5804 1.1878 0.0005 5 6 4.2679 0.0156 0.0005 6 6 3.5564 -1.2040 0.0005 7 7 3.9583 -2.4637 -0.0049 8 6 2.8795 -3.2684 0.0005 9 6 2.9000 -4.7441 0.0005 10 8 1.8555 -5.3667 0.0005 11 7 4.0765 -5.4016 0.0005 12 6 4.0969 -6.8666 0.0010 13 1 3.2601 -7.2418 -0.5881 14 6 3.9786 -7.3777 1.4382 15 6 5.4111 -7.3585 -0.6087 16 6 5.4726 -6.9534 -2.0828 17 6 6.7871 -7.4447 -2.6924 18 6 6.8483 -7.0402 -4.1666 19 7 8.1067 -7.5112 -4.7504 20 6 8.3848 -7.2644 -6.0684 21 1 7.6766 -6.7222 -6.6773 22 6 9.5773 -7.7102 -6.6214 23 7 10.4407 -8.3706 -5.8791 24 14 9.9564 -7.3742 -8.4194 25 1 8.8321 -6.6200 -9.0296 26 1 11.2025 -6.5729 -8.5212 27 1 10.1361 -8.6620 -9.1366 28 6 1.7624 -2.4826 0.0005 29 7 2.1838 -1.1875 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6267 2.1022 -0.0004 34 1 4.1117 2.1280 0.0001 35 1 5.3479 0.0168 0.0005 36 1 4.9097 -4.9050 0.0008 37 1 4.8154 -7.0024 2.0274 38 1 3.0423 -7.0272 1.8726 39 1 3.9934 -8.4676 1.4386 40 1 6.2494 -6.9119 -0.0739 41 1 5.4653 -8.4441 -0.5277 42 1 4.6343 -7.3999 -2.6176 43 1 5.4184 -5.8678 -2.1639 44 1 7.6251 -6.9979 -2.1575 45 1 6.8417 -8.5304 -2.6114 46 1 6.0103 -7.4874 -4.7013 47 1 6.7935 -5.9546 -4.2480 48 1 8.7426 -7.9985 -4.2036 49 1 11.2738 -8.6825 -6.2657 50 1 0.7377 -2.8240 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176504085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:14 Heat of formation + Delta-G solvation = 17.749983 kcal Electronic energy + Delta-G solvation = -28641.687546 eV Core-core repulsion = 24668.640604 eV Total energy + Delta-G solvation = -3973.046942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.98051 -40.83390 -38.56862 -37.96989 -36.84148 -35.23128 -34.78315 -33.16433 -32.38267 -31.48176 -30.40269 -28.83617 -28.21075 -26.12387 -25.58470 -23.80664 -23.65746 -22.66113 -22.06792 -21.70148 -21.31548 -19.24302 -19.13756 -18.07165 -17.73299 -17.30445 -17.03448 -16.70378 -16.27932 -16.21813 -15.89266 -15.44301 -15.30446 -15.27799 -15.07456 -14.77601 -14.57773 -14.33918 -14.16433 -14.03057 -13.59195 -13.30200 -13.24667 -13.04618 -12.91077 -12.87503 -12.50131 -12.48260 -12.40070 -12.29702 -12.12496 -12.08226 -11.90819 -11.84253 -11.58666 -11.49473 -11.41838 -11.17631 -10.96858 -10.20762 -9.87266 -9.03585 -8.89061 -7.98050 -5.27753 -0.38826 0.17017 0.94059 1.36754 1.45018 1.46755 1.57128 2.16573 2.25531 2.53097 2.53843 2.97704 3.33471 3.34852 3.57849 3.62090 3.79105 3.99808 4.03269 4.05631 4.12186 4.16851 4.19949 4.33476 4.39725 4.54358 4.58463 4.59511 4.62835 4.62937 4.71942 4.76228 4.85191 4.91794 4.97177 4.98237 5.01349 5.09441 5.09655 5.22567 5.24209 5.29058 5.30996 5.41040 5.43976 5.50556 5.52316 5.56493 5.92121 6.24852 6.36149 6.63832 7.11306 7.30245 8.06084 8.30734 9.25776 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.002007 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.186655 B =13946.535935 C =15981.786534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.067 3.933 3 C -0.134 4.134 4 C -0.073 4.073 5 C -0.114 4.114 6 C 0.215 3.785 7 N -0.499 5.499 8 C -0.022 4.022 9 C 0.600 3.400 10 O -0.570 6.570 11 N -0.698 5.698 12 C 0.142 3.858 13 H 0.076 0.924 14 C -0.156 4.156 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.111 4.111 18 C 0.149 3.851 19 N -0.748 5.748 20 C -0.250 4.250 21 H 0.072 0.928 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.978 3.022 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.290 1.290 28 C -0.023 4.023 29 N -0.363 5.363 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.192 0.808 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.013 0.987 48 H 0.375 0.625 49 H 0.253 0.747 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.380 22.107 20.311 37.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.134 4.134 6 C -0.030 4.030 7 N -0.220 5.220 8 C -0.155 4.155 9 C 0.386 3.614 10 O -0.449 6.449 11 N -0.349 5.349 12 C 0.038 3.962 13 H 0.094 0.906 14 C -0.214 4.214 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.149 4.149 18 C 0.022 3.978 19 N -0.391 5.391 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.217 1.217 28 C -0.159 4.159 29 N -0.035 5.035 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.209 0.791 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.206 0.794 49 H 0.062 0.938 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.401 21.367 20.137 36.930 hybrid contribution 0.411 0.001 -0.925 1.012 sum -21.990 21.367 19.213 36.184 Atomic orbital electron populations 1.21079 0.85530 1.05871 1.04914 1.21121 0.96995 0.82968 1.02443 1.21271 0.94881 0.97439 1.01812 1.21590 0.94160 0.98887 0.95057 1.20643 1.01643 0.87362 1.03774 1.21494 0.80998 0.94828 1.05729 1.70751 1.29145 0.99198 1.22952 1.20617 0.90284 0.94174 1.10392 1.17064 0.84039 0.84641 0.75645 1.90757 1.33055 1.68433 1.52702 1.45940 1.08325 1.07800 1.72787 1.21117 0.99093 0.78355 0.97658 0.90582 1.22115 1.01812 1.02418 0.95067 1.21849 0.96122 1.02898 0.94501 1.21417 0.96351 1.00704 0.95880 1.21585 0.98295 1.01062 0.93943 1.20838 0.87524 0.95862 0.93559 1.42625 1.19650 1.67647 1.09182 1.19688 1.01504 1.28799 0.88228 0.90986 1.25645 0.97094 1.01490 1.02774 1.69827 1.10683 1.44490 1.36964 0.85012 0.77700 0.77149 0.79521 1.19219 1.21630 1.21662 1.22704 1.01322 0.80769 1.11095 1.42889 1.08690 1.06153 1.45756 0.88853 0.90993 0.86239 0.79055 0.80154 0.82149 0.75140 0.91558 0.93629 0.89758 0.90235 0.88673 0.92233 0.92597 0.92089 0.91903 0.96747 0.96933 0.79351 0.93840 0.77525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.84 71.24 0.70 0.21 16 2 C 0.07 0.71 6.78 41.02 0.28 0.99 16 3 C -0.13 -0.80 9.58 22.06 0.21 -0.59 16 4 C -0.07 -0.55 10.06 22.30 0.22 -0.32 16 5 C -0.11 -1.70 10.11 22.45 0.23 -1.47 16 6 C 0.22 4.79 7.79 134.21 1.05 5.84 16 7 N -0.50 -13.51 11.01 -183.49 -2.02 -15.53 16 8 C -0.02 -0.60 6.94 40.80 0.28 -0.32 16 9 C 0.60 17.07 7.79 86.71 0.68 17.75 16 10 O -0.57 -18.59 16.53 -4.02 -0.07 -18.65 16 11 N -0.70 -17.19 4.53 -445.63 -2.02 -19.20 16 12 C 0.14 3.14 2.57 44.99 0.12 3.25 16 13 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 14 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 15 C -0.12 -2.44 4.75 30.59 0.15 -2.30 16 16 C -0.11 -2.85 5.10 30.59 0.16 -2.70 16 17 C -0.11 -3.74 5.33 30.59 0.16 -3.58 16 18 C 0.15 6.50 6.26 86.38 0.54 7.04 16 19 N -0.75 -40.91 5.60 -343.45 -1.92 -42.83 16 20 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 21 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -61.22 13.06 21.65 0.28 -60.93 16 24 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 28 C -0.02 -0.50 10.78 83.63 0.90 0.41 16 29 N -0.36 -6.82 2.93 -337.95 -0.99 -7.81 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.40 7.46 -2.39 -0.02 0.38 16 32 H 0.12 -0.16 8.07 -2.39 -0.02 -0.18 16 33 H 0.19 -0.42 8.06 -2.91 -0.02 -0.44 16 34 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.41 9.75 8.30 -92.71 -0.77 8.98 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 48 H 0.37 21.38 7.67 -92.71 -0.71 20.67 16 49 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 50 H 0.21 3.56 7.77 -2.91 -0.02 3.54 16 Total: -1.00 -81.08 417.68 2.42 -78.66 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.53 Total: 32.85 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 7.66 Total: 3.71 kcal Atomic # 7 Polarization: -139.64 SS G_CDS: -6.67 Total: -146.30 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.07 Total: -18.65 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -81.08 2.42 -78.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176504085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.412 kcal (2) G-P(sol) polarization free energy of solvation -81.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds