Wall clock time and date at job start Wed Apr 1 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39051 * 119.35774 * 2 1 4 4 C 1.35709 * 122.67194 * 179.97438 * 3 2 1 5 5 C 1.41007 * 120.59458 * 0.02675 * 4 3 2 6 6 N 1.32143 * 134.70383 * 179.97438 * 5 4 3 7 7 N 1.39982 * 108.89287 * 179.97438 * 6 5 4 8 8 H 0.97001 * 125.06151 * 179.97438 * 7 6 5 9 9 C 1.34239 * 109.87036 * 0.23237 * 7 6 5 10 10 C 1.37570 * 107.93209 * 359.63295 * 9 7 6 11 11 C 1.38458 * 119.35333 * 180.02562 * 2 1 3 12 12 C 1.47301 * 120.74093 * 359.97438 * 11 2 1 13 13 O 1.21631 * 119.99919 * 90.00374 * 12 11 2 14 14 N 1.34772 * 120.00243 * 269.99929 * 12 11 2 15 15 C 1.46501 * 120.00156 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47361 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47251 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47373 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47373 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47019 * 180.02562 * 19 18 17 21 21 N 1.46501 * 109.47128 * 179.97438 * 20 19 18 22 22 C 1.36944 * 120.00294 * 180.02562 * 21 20 19 23 23 H 1.08000 * 119.99534 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00073 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99956 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47223 * 59.99408 * 26 24 22 28 28 H 1.48503 * 109.47264 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46718 * 299.99168 * 26 24 22 30 30 H 1.09004 * 109.47343 * 89.99893 * 1 2 3 31 31 H 1.09000 * 109.47548 * 209.99953 * 1 2 3 32 32 H 1.09000 * 109.47132 * 330.00262 * 1 2 3 33 33 H 1.08001 * 118.66335 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.69711 * 179.97438 * 4 3 2 35 35 H 1.07999 * 126.03348 * 179.74363 * 9 7 6 36 36 H 0.97000 * 119.99915 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47322 * 300.00471 * 15 14 12 38 38 H 1.09004 * 109.46962 * 60.00335 * 15 14 12 39 39 H 1.08997 * 109.46586 * 300.00175 * 16 15 14 40 40 H 1.08999 * 109.46630 * 60.00237 * 16 15 14 41 41 H 1.09001 * 109.47223 * 300.00025 * 17 16 15 42 42 H 1.09004 * 109.47170 * 59.99955 * 17 16 15 43 43 H 1.09001 * 109.46968 * 300.00183 * 18 17 16 44 44 H 1.09004 * 109.47007 * 59.99857 * 18 17 16 45 45 H 1.09001 * 109.47223 * 300.00027 * 19 18 17 46 46 H 1.08996 * 109.47340 * 59.99676 * 19 18 17 47 47 H 1.08998 * 109.47371 * 299.99600 * 20 19 18 48 48 H 1.09000 * 109.47446 * 60.00404 * 20 19 18 49 49 H 0.97000 * 119.99929 * 0.02562 * 21 20 19 50 50 H 0.97003 * 119.99957 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2119 0.0000 4 6 3.5435 1.2904 0.0005 5 6 4.3302 0.1201 0.0005 6 7 5.6282 -0.1274 0.0005 7 7 5.8254 -1.5132 0.0011 8 1 6.6900 -1.9531 0.0009 9 6 4.6398 -2.1428 -0.0036 10 6 3.6519 -1.1854 0.0010 11 6 2.1857 -1.2068 -0.0005 12 6 1.4513 -2.4837 -0.0005 13 8 1.1477 -3.0107 -1.0539 14 7 1.1158 -3.0681 1.1666 15 6 0.3849 -4.3378 1.1666 16 6 0.1307 -4.7801 2.6091 17 6 -0.6321 -6.1063 2.6090 18 6 -0.8857 -6.5489 4.0515 19 6 -1.6490 -7.8749 4.0514 20 6 -1.9032 -8.3170 5.4938 21 7 -2.6346 -9.5864 5.4938 22 6 -2.9766 -10.1797 6.6797 23 1 -2.7067 -9.7120 7.6150 24 6 -3.6691 -11.3826 6.6797 25 7 -3.9976 -11.9528 5.5398 26 14 -4.1362 -12.1915 8.2974 27 1 -5.0084 -11.2754 9.0753 28 1 -4.8651 -13.4566 8.0260 29 1 -2.9069 -12.4855 9.0768 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6167 2.1280 -0.0004 34 1 4.0235 2.2580 0.0001 35 1 4.4883 -3.2121 -0.0083 36 1 1.3576 -2.6478 2.0066 37 1 -0.5680 -4.2085 0.6533 38 1 0.9747 -5.0965 0.6521 39 1 1.0834 -4.9092 3.1226 40 1 -0.4593 -4.0212 3.1231 41 1 -1.5848 -5.9776 2.0953 42 1 -0.0417 -6.8650 2.0951 43 1 0.0672 -6.6778 4.5648 44 1 -1.4759 -5.7904 4.5658 45 1 -2.6019 -7.7455 3.5382 46 1 -1.0594 -8.6335 3.5369 47 1 -0.9505 -8.4463 6.0075 48 1 -2.4932 -7.5583 6.0079 49 1 -2.8767 -10.0066 4.6538 50 1 -4.4819 -12.7933 5.5398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178898279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:13 Heat of formation + Delta-G solvation = 41.840172 kcal Electronic energy + Delta-G solvation = -27776.543298 eV Core-core repulsion = 23804.540984 eV Total energy + Delta-G solvation = -3972.002313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.75961 -40.04888 -37.75709 -36.81314 -35.40953 -33.97819 -33.22595 -31.98896 -31.45239 -30.56032 -29.92105 -27.62175 -26.69849 -24.77630 -24.04118 -22.71673 -22.04520 -21.57652 -21.21194 -20.66388 -20.04689 -18.77027 -17.91467 -16.97705 -16.55232 -16.31040 -16.24151 -15.77514 -15.58886 -15.35171 -14.82079 -14.66355 -14.24012 -13.96511 -13.87483 -13.67370 -13.48893 -13.39948 -12.92642 -12.74424 -12.73860 -12.37556 -12.35537 -12.07395 -11.90825 -11.73416 -11.38663 -11.30954 -11.18012 -10.92059 -10.73980 -10.73144 -10.66547 -10.44194 -10.26505 -10.16332 -9.96488 -9.63403 -9.44806 -9.26088 -8.83761 -8.14185 -6.88548 -5.73610 -3.02122 -0.07335 1.28849 1.75812 2.08662 2.23313 2.80372 3.20106 3.45602 3.49470 3.50975 3.68151 4.08733 4.35004 4.36864 4.52127 4.60082 4.63971 4.71938 4.76438 4.86534 4.94185 5.00943 5.16654 5.20945 5.23195 5.33675 5.37653 5.42659 5.55015 5.60689 5.62707 5.68431 5.70570 5.81499 5.86593 5.92781 5.94737 6.03912 6.05964 6.12574 6.25137 6.33206 6.33995 6.41654 6.48542 6.51635 6.91888 6.95927 7.00796 7.07619 7.71679 7.79453 8.45776 9.56309 10.15988 10.50481 11.49403 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.001309 C = 0.001282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.490489 B =21386.614164 C =21836.482314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C -0.077 4.077 4 C -0.081 4.081 5 C 0.101 3.899 6 N -0.295 5.295 7 N -0.426 5.426 8 H 0.446 0.554 9 C 0.085 3.915 10 C -0.181 4.181 11 C -0.060 4.060 12 C 0.565 3.435 13 O -0.528 6.528 14 N -0.722 5.722 15 C 0.115 3.885 16 C -0.131 4.131 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.127 4.127 20 C 0.152 3.848 21 N -0.735 5.735 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.187 0.813 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.193 29.342 -13.564 37.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.073 4.073 3 C -0.100 4.100 4 C -0.102 4.102 5 C -0.054 4.054 6 N -0.123 5.123 7 N -0.128 5.128 8 H 0.291 0.709 9 C -0.070 4.070 10 C -0.192 4.192 11 C -0.066 4.066 12 C 0.350 3.650 13 O -0.404 6.404 14 N -0.374 5.374 15 C -0.008 4.008 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.165 4.165 20 C 0.024 3.976 21 N -0.379 5.379 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.204 0.796 36 H 0.238 0.762 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.153 29.427 -14.149 37.855 hybrid contribution -0.476 -1.174 0.999 1.613 sum 18.678 28.253 -13.151 36.332 Atomic orbital electron populations 1.20886 0.90390 1.03187 1.03135 1.19641 0.96094 0.91270 1.00270 1.20409 0.93654 0.97376 0.98567 1.19933 0.92525 0.95507 1.02186 1.20860 0.90391 0.94443 0.99698 1.77710 1.15517 0.90059 1.29063 1.46321 1.08386 1.05329 1.52736 0.70879 1.22505 0.85197 0.98927 1.00411 1.20095 0.92101 0.92385 1.14601 1.19923 0.90142 0.92722 1.03784 1.18146 0.78671 0.84108 0.84061 1.90862 1.54045 1.64287 1.31225 1.46140 1.58283 1.24486 1.08466 1.21512 0.96774 0.84492 0.97979 1.21831 1.01436 0.98666 0.94925 1.21517 1.00317 0.95499 0.98087 1.21498 1.00468 0.97630 0.95534 1.21727 1.00034 0.96040 0.98654 1.20656 0.94638 0.88877 0.93385 1.42389 1.67090 1.22066 1.06368 1.19217 1.29299 1.02447 0.86200 0.91277 1.24746 1.01449 0.98054 0.96856 1.69654 1.45142 1.19560 1.23987 0.86255 0.78113 0.78685 0.83062 1.21280 1.21660 1.21294 0.90462 0.91519 0.90706 0.84799 0.84919 0.79597 0.76232 0.91113 0.91212 0.91283 0.91173 0.91575 0.91644 0.92130 0.92082 0.92073 0.92107 0.96627 0.96593 0.78335 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.58 36.01 0.34 -0.38 16 2 C -0.07 -0.53 5.91 -104.24 -0.62 -1.14 16 3 C -0.08 -0.48 9.45 -40.19 -0.38 -0.86 16 4 C -0.08 -0.58 10.02 -39.44 -0.40 -0.97 16 5 C 0.10 0.92 7.49 -83.08 -0.62 0.30 16 6 N -0.30 -2.70 12.71 33.24 0.42 -2.28 16 7 N -0.43 -2.53 7.20 30.75 0.22 -2.31 16 8 H 0.45 1.00 8.96 -182.69 -1.64 -0.64 16 9 C 0.09 0.55 12.00 -16.74 -0.20 0.35 16 10 C -0.18 -1.59 6.35 -103.15 -0.65 -2.25 16 11 C -0.06 -0.53 5.80 -102.75 -0.60 -1.13 16 12 C 0.56 5.52 5.67 -12.58 -0.07 5.45 16 13 O -0.53 -7.26 17.11 5.25 0.09 -7.17 16 14 N -0.72 -5.27 5.54 -61.42 -0.34 -5.61 16 15 C 0.12 0.91 5.67 -4.04 -0.02 0.88 16 16 C -0.13 -0.94 5.33 -26.73 -0.14 -1.08 16 17 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 18 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 19 C -0.13 -2.02 5.33 -26.74 -0.14 -2.16 16 20 C 0.15 3.12 6.26 -4.04 -0.03 3.10 16 21 N -0.74 -19.29 5.60 -59.91 -0.34 -19.63 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 26 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.45 7.02 -51.93 -0.36 0.08 16 32 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.40 2.12 8.46 -40.82 -0.35 1.78 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 50 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 419.23 15.07 6.32 6.32 Total: -1.00 -36.94 419.23 -11.36 -48.31 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -9.39 Total: 2.99 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.05 Total: -10.22 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.69 Total: -57.87 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.09 Total: -7.17 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.94 -11.36 -48.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178898279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.148 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds