Wall clock time and date at job start Wed Apr 1 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39049 * 119.35531 * 2 1 4 4 C 1.35705 * 122.67321 * 179.69635 * 3 2 1 5 5 C 1.41020 * 120.59682 * 0.57494 * 4 3 2 6 6 N 1.32139 * 134.71177 * 179.69169 * 5 4 3 7 7 N 1.39984 * 108.89223 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.05984 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87206 * 0.02562 * 7 6 5 10 10 C 1.37572 * 107.93169 * 359.97438 * 9 7 6 11 11 C 1.38456 * 119.35604 * 180.27116 * 2 1 3 12 12 C 1.47303 * 120.74381 * 0.02562 * 11 2 1 13 13 O 1.21628 * 120.00301 * 89.99828 * 12 11 2 14 14 N 1.34774 * 119.99916 * 270.00211 * 12 11 2 15 15 C 1.46505 * 120.00279 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46685 * 35.00224 * 15 14 12 17 17 C 1.52999 * 109.47060 * 154.99947 * 15 14 12 18 18 N 1.46500 * 109.47147 * 305.00148 * 17 15 14 19 19 C 1.36940 * 119.99867 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00014 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99915 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00031 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47297 * 59.99572 * 23 21 19 25 25 H 1.48501 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46761 * 299.99801 * 23 21 19 27 27 C 1.53000 * 109.47256 * 275.00101 * 15 14 12 28 28 C 1.53006 * 109.46899 * 64.99586 * 27 15 14 29 29 C 1.53004 * 109.47162 * 65.00344 * 28 27 15 30 30 C 1.52997 * 109.46950 * 184.99784 * 28 27 15 31 31 H 1.09002 * 109.47152 * 269.72915 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.73015 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72996 * 1 2 3 34 34 H 1.07999 * 118.66678 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.70521 * 180.29589 * 4 3 2 36 36 H 1.08000 * 126.03136 * 180.02562 * 9 7 6 37 37 H 0.97004 * 120.00389 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.47371 * 65.00454 * 17 15 14 39 39 H 1.09000 * 109.46723 * 185.00252 * 17 15 14 40 40 H 0.96997 * 120.00362 * 0.02562 * 18 17 15 41 41 H 0.97003 * 120.00143 * 180.02562 * 22 21 19 42 42 H 1.08992 * 109.47045 * 184.99352 * 27 15 14 43 43 H 1.08997 * 109.47379 * 305.00067 * 27 15 14 44 44 H 1.08997 * 109.47178 * 304.99958 * 28 27 15 45 45 H 1.09002 * 109.46796 * 299.99741 * 29 28 27 46 46 H 1.09000 * 109.47079 * 59.99040 * 29 28 27 47 47 H 1.08996 * 109.47060 * 179.97438 * 29 28 27 48 48 H 1.09010 * 109.47083 * 60.00145 * 30 28 27 49 49 H 1.09002 * 109.47460 * 179.97438 * 30 28 27 50 50 H 1.09000 * 109.47417 * 300.00611 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2119 0.0000 4 6 3.5434 1.2905 0.0061 5 6 4.3303 0.1202 0.0005 6 7 5.6283 -0.1272 -0.0011 7 7 5.8255 -1.5131 -0.0079 8 1 6.6900 -1.9529 -0.0100 9 6 4.6399 -2.1427 -0.0111 10 6 3.6519 -1.1853 -0.0059 11 6 2.1858 -1.2068 -0.0057 12 6 1.4515 -2.4837 -0.0123 13 8 1.1487 -3.0057 -1.0683 14 7 1.1151 -3.0736 1.1518 15 6 0.3843 -4.3434 1.1453 16 1 0.7142 -4.9480 0.3006 17 6 0.6580 -5.0960 2.4490 18 7 2.1035 -5.2548 2.6269 19 6 2.5903 -5.9028 3.7307 20 1 1.9087 -6.2971 4.4698 21 6 3.9599 -6.0528 3.8996 22 7 4.7906 -5.5727 2.9986 23 14 4.6240 -6.9374 5.4049 24 1 4.1048 -8.3284 5.4309 25 1 6.1078 -6.9642 5.3488 26 1 4.1874 -6.2231 6.6314 27 6 -1.1155 -4.0680 1.0207 28 6 -1.4052 -3.4272 -0.3382 29 6 -1.0831 -4.4257 -1.4519 30 6 -2.8829 -3.0381 -0.4140 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 -0.8876 -0.5180 33 1 -0.3633 0.8924 -0.5097 34 1 1.6167 2.1280 -0.0004 35 1 4.0234 2.2580 0.0106 36 1 4.4884 -3.2120 -0.0160 37 1 1.3568 -2.6575 1.9941 38 1 0.2486 -4.5320 3.2870 39 1 0.1870 -6.0781 2.4073 40 1 2.7157 -4.9010 1.9630 41 1 5.7477 -5.6778 3.1165 42 1 -1.6653 -5.0053 1.1049 43 1 -1.4280 -3.3908 1.8156 44 1 -0.7883 -2.5367 -0.4589 45 1 -0.0303 -4.7029 -1.3980 46 1 -1.6999 -5.3162 -1.3311 47 1 -1.2898 -3.9693 -2.4200 48 1 -3.1124 -2.3267 0.3795 49 1 -3.0892 -2.5811 -1.3819 50 1 -3.4998 -3.9285 -0.2932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268107950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:35 Heat of formation + Delta-G solvation = 57.025678 kcal Electronic energy + Delta-G solvation = -31515.015397 eV Core-core repulsion = 27543.671577 eV Total energy + Delta-G solvation = -3971.343820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13441 -39.87102 -37.43466 -36.43366 -34.98468 -33.44769 -32.65431 -31.31301 -30.73902 -29.94764 -29.04306 -26.88971 -26.69586 -25.58368 -24.19648 -23.01023 -22.21609 -20.95938 -20.57711 -19.70956 -19.58463 -18.10591 -17.48016 -17.01312 -16.15875 -15.78475 -15.54867 -15.19440 -14.74519 -14.69322 -14.59211 -13.93796 -13.82671 -13.61970 -13.40731 -13.19321 -13.05673 -13.00993 -12.85723 -12.29725 -12.15689 -12.02968 -11.97254 -11.80926 -11.55927 -11.49514 -11.35129 -11.06956 -11.01209 -10.84933 -10.64642 -10.50526 -10.27324 -10.17915 -10.05166 -10.00943 -9.77024 -9.39386 -8.97022 -8.66431 -8.60670 -7.52499 -7.02158 -5.86760 -3.14296 0.54053 1.87256 2.42552 2.75276 2.91415 3.37979 3.42886 3.43295 3.51274 3.79555 4.30371 4.50533 4.76047 4.86973 4.93115 5.07016 5.11506 5.19061 5.21468 5.36570 5.47515 5.51941 5.57297 5.58864 5.61357 5.64436 5.66915 5.71128 5.85590 5.92588 5.97869 6.04808 6.08788 6.11806 6.13947 6.18140 6.28997 6.37835 6.43297 6.45032 6.48326 6.57450 6.64564 6.72604 6.82808 6.84700 6.95189 7.18494 7.61679 7.64816 7.86789 8.32433 8.52683 9.44935 10.00408 10.36355 11.36039 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.005006 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.859167 B = 5592.089979 C = 8553.462605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 C -0.077 4.077 4 C -0.088 4.088 5 C 0.101 3.899 6 N -0.308 5.308 7 N -0.424 5.424 8 H 0.446 0.554 9 C 0.112 3.888 10 C -0.188 4.188 11 C -0.041 4.041 12 C 0.564 3.436 13 O -0.528 6.528 14 N -0.700 5.700 15 C 0.134 3.866 16 H 0.091 0.909 17 C 0.143 3.857 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.122 4.122 28 C -0.099 4.099 29 C -0.138 4.138 30 C -0.146 4.146 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.193 0.807 37 H 0.405 0.595 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 11.339 -7.419 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.099 4.099 4 C -0.109 4.109 5 C -0.054 4.054 6 N -0.136 5.136 7 N -0.125 5.125 8 H 0.291 0.709 9 C -0.044 4.044 10 C -0.198 4.198 11 C -0.046 4.046 12 C 0.350 3.650 13 O -0.406 6.406 14 N -0.350 5.350 15 C 0.030 3.970 16 H 0.109 0.891 17 C 0.015 3.985 18 N -0.374 5.374 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.161 4.161 28 C -0.117 4.117 29 C -0.195 4.195 30 C -0.204 4.204 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.210 0.790 37 H 0.240 0.760 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.219 0.781 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.591 11.378 -8.004 15.848 hybrid contribution 0.562 -0.915 1.170 1.589 sum -7.029 10.463 -6.833 14.338 Atomic orbital electron populations 1.20943 0.90900 1.03272 1.02510 1.19493 0.95746 0.91311 1.02616 1.20308 0.93591 0.97129 0.98900 1.19824 0.92507 0.95252 1.03333 1.20823 0.90519 0.94417 0.99628 1.77622 1.15469 0.90360 1.30160 1.46296 1.08546 1.05161 1.52447 0.70936 1.22739 0.84909 0.99412 0.97389 1.20069 0.92143 0.92230 1.15390 1.20052 0.90299 0.92955 1.01321 1.18069 0.78402 0.84076 0.84498 1.90816 1.54463 1.64340 1.31009 1.46058 1.56839 1.23661 1.08433 1.21415 0.90711 0.84454 1.00414 0.89075 1.20976 0.87895 0.96722 0.92870 1.42300 0.99833 1.68881 1.26408 1.19177 0.90559 1.28370 0.98917 0.91229 1.24679 0.95932 1.01512 0.98533 1.69627 1.01948 1.51116 1.35509 0.86276 0.77742 0.79576 0.82620 1.21275 1.21769 1.21302 1.22020 0.95608 1.01174 0.97312 1.21278 0.95638 0.99984 0.94803 1.21835 1.02805 0.97636 0.97274 1.21873 0.96799 1.00791 1.00924 0.91041 0.90926 0.91303 0.85407 0.85452 0.79024 0.75969 0.95783 0.94877 0.78130 0.93651 0.91147 0.91894 0.90067 0.90568 0.94324 0.93832 0.93266 0.93224 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.58 36.01 0.35 -0.92 16 2 C -0.09 -1.14 5.91 -104.24 -0.62 -1.76 16 3 C -0.08 -0.87 9.45 -40.19 -0.38 -1.25 16 4 C -0.09 -1.12 10.02 -39.43 -0.40 -1.51 16 5 C 0.10 1.57 7.49 -83.07 -0.62 0.94 16 6 N -0.31 -4.85 12.71 33.24 0.42 -4.43 16 7 N -0.42 -5.90 7.20 30.75 0.22 -5.68 16 8 H 0.45 4.75 8.96 -182.69 -1.64 3.11 16 9 C 0.11 1.71 12.00 -16.74 -0.20 1.51 16 10 C -0.19 -3.01 6.35 -103.15 -0.65 -3.66 16 11 C -0.04 -0.61 5.80 -102.75 -0.60 -1.21 16 12 C 0.56 8.85 4.58 -12.58 -0.06 8.79 16 13 O -0.53 -9.28 12.05 5.25 0.06 -9.21 16 14 N -0.70 -10.62 4.47 -54.92 -0.25 -10.86 16 15 C 0.13 2.09 2.33 -67.93 -0.16 1.93 16 16 H 0.09 1.59 5.92 -51.93 -0.31 1.28 16 17 C 0.14 2.63 5.82 -4.04 -0.02 2.61 16 18 N -0.73 -16.99 5.43 -59.91 -0.33 -17.32 16 19 C -0.24 -6.31 9.99 -15.06 -0.15 -6.46 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.12 -1.58 4.36 -26.73 -0.12 -1.69 16 28 C -0.10 -1.26 2.38 -90.62 -0.22 -1.48 16 29 C -0.14 -1.91 8.03 37.16 0.30 -1.61 16 30 C -0.15 -1.58 9.19 37.16 0.34 -1.23 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.87 4.73 -51.93 -0.25 0.63 16 33 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.19 2.87 8.06 -52.49 -0.42 2.45 16 37 H 0.41 6.24 8.59 -40.82 -0.35 5.89 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.38 9.42 7.33 -40.82 -0.30 9.12 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.13 2.84 -51.93 -0.15 0.98 16 45 H 0.08 1.22 4.75 -51.93 -0.25 0.97 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -31.15 397.51 -10.17 -41.32 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -8.70 Total: 16.49 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.30 Total: -7.39 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.80 Total: -63.80 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.15 -10.17 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.342 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds