Wall clock time and date at job start Wed Apr 1 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39049 * 119.35531 * 2 1 4 4 C 1.35705 * 122.67321 * 179.69635 * 3 2 1 5 5 C 1.41020 * 120.59682 * 0.57494 * 4 3 2 6 6 N 1.32139 * 134.71177 * 179.69169 * 5 4 3 7 7 N 1.39984 * 108.89223 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.05984 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87206 * 0.02562 * 7 6 5 10 10 C 1.37572 * 107.93169 * 359.97438 * 9 7 6 11 11 C 1.38456 * 119.35604 * 180.27116 * 2 1 3 12 12 C 1.47303 * 120.74381 * 0.02562 * 11 2 1 13 13 O 1.21628 * 120.00301 * 89.99828 * 12 11 2 14 14 N 1.34774 * 119.99916 * 270.00211 * 12 11 2 15 15 C 1.46505 * 120.00279 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46685 * 35.00224 * 15 14 12 17 17 C 1.52999 * 109.47060 * 154.99947 * 15 14 12 18 18 N 1.46500 * 109.47147 * 305.00148 * 17 15 14 19 19 C 1.36940 * 119.99867 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00014 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99915 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00031 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47297 * 59.99572 * 23 21 19 25 25 H 1.48501 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46761 * 299.99801 * 23 21 19 27 27 C 1.53000 * 109.47256 * 275.00101 * 15 14 12 28 28 C 1.53006 * 109.46899 * 64.99586 * 27 15 14 29 29 C 1.53004 * 109.47162 * 65.00344 * 28 27 15 30 30 C 1.52997 * 109.46950 * 184.99784 * 28 27 15 31 31 H 1.09002 * 109.47152 * 269.72915 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.73015 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72996 * 1 2 3 34 34 H 1.07999 * 118.66678 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.70521 * 180.29589 * 4 3 2 36 36 H 1.08000 * 126.03136 * 180.02562 * 9 7 6 37 37 H 0.97004 * 120.00389 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.47371 * 65.00454 * 17 15 14 39 39 H 1.09000 * 109.46723 * 185.00252 * 17 15 14 40 40 H 0.96997 * 120.00362 * 0.02562 * 18 17 15 41 41 H 0.97003 * 120.00143 * 180.02562 * 22 21 19 42 42 H 1.08992 * 109.47045 * 184.99352 * 27 15 14 43 43 H 1.08997 * 109.47379 * 305.00067 * 27 15 14 44 44 H 1.08997 * 109.47178 * 304.99958 * 28 27 15 45 45 H 1.09002 * 109.46796 * 299.99741 * 29 28 27 46 46 H 1.09000 * 109.47079 * 59.99040 * 29 28 27 47 47 H 1.08996 * 109.47060 * 179.97438 * 29 28 27 48 48 H 1.09010 * 109.47083 * 60.00145 * 30 28 27 49 49 H 1.09002 * 109.47460 * 179.97438 * 30 28 27 50 50 H 1.09000 * 109.47417 * 300.00611 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2119 0.0000 4 6 3.5434 1.2905 0.0061 5 6 4.3303 0.1202 0.0005 6 7 5.6283 -0.1272 -0.0011 7 7 5.8255 -1.5131 -0.0079 8 1 6.6900 -1.9529 -0.0100 9 6 4.6399 -2.1427 -0.0111 10 6 3.6519 -1.1853 -0.0059 11 6 2.1858 -1.2068 -0.0057 12 6 1.4515 -2.4837 -0.0123 13 8 1.1487 -3.0057 -1.0683 14 7 1.1151 -3.0736 1.1518 15 6 0.3843 -4.3434 1.1453 16 1 0.7142 -4.9480 0.3006 17 6 0.6580 -5.0960 2.4490 18 7 2.1035 -5.2548 2.6269 19 6 2.5903 -5.9028 3.7307 20 1 1.9087 -6.2971 4.4698 21 6 3.9599 -6.0528 3.8996 22 7 4.7906 -5.5727 2.9986 23 14 4.6240 -6.9374 5.4049 24 1 4.1048 -8.3284 5.4309 25 1 6.1078 -6.9642 5.3488 26 1 4.1874 -6.2231 6.6314 27 6 -1.1155 -4.0680 1.0207 28 6 -1.4052 -3.4272 -0.3382 29 6 -1.0831 -4.4257 -1.4519 30 6 -2.8829 -3.0381 -0.4140 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 -0.8876 -0.5180 33 1 -0.3633 0.8924 -0.5097 34 1 1.6167 2.1280 -0.0004 35 1 4.0234 2.2580 0.0106 36 1 4.4884 -3.2120 -0.0160 37 1 1.3568 -2.6575 1.9941 38 1 0.2486 -4.5320 3.2870 39 1 0.1870 -6.0781 2.4073 40 1 2.7157 -4.9010 1.9630 41 1 5.7477 -5.6778 3.1165 42 1 -1.6653 -5.0053 1.1049 43 1 -1.4280 -3.3908 1.8156 44 1 -0.7883 -2.5367 -0.4589 45 1 -0.0303 -4.7029 -1.3980 46 1 -1.6999 -5.3162 -1.3311 47 1 -1.2898 -3.9693 -2.4200 48 1 -3.1124 -2.3267 0.3795 49 1 -3.0892 -2.5811 -1.3819 50 1 -3.4998 -3.9285 -0.2932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268107950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:34 Heat of formation + Delta-G solvation = 37.637596 kcal Electronic energy + Delta-G solvation = -31515.856128 eV Core-core repulsion = 27543.671577 eV Total energy + Delta-G solvation = -3972.184551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25254 -41.08690 -38.52143 -37.65104 -36.41117 -34.96509 -33.74919 -32.90406 -31.95969 -31.05726 -30.37639 -27.89987 -27.72640 -27.14138 -25.26448 -24.59933 -23.51115 -22.03890 -21.89102 -20.85645 -20.69483 -19.24100 -19.20143 -18.34463 -17.38698 -16.94672 -16.86849 -16.43100 -16.13350 -15.86889 -15.69782 -15.39664 -15.23950 -14.78826 -14.63279 -14.46666 -14.31030 -14.15390 -14.05731 -13.60072 -13.25959 -13.11797 -12.97497 -12.93139 -12.79639 -12.76526 -12.55599 -12.49525 -12.32122 -12.29831 -12.12936 -11.87604 -11.78688 -11.53755 -11.31233 -11.16338 -11.09367 -10.94148 -10.60079 -9.86228 -9.71495 -8.96837 -8.61936 -7.93066 -5.19938 -0.52607 0.82119 1.27152 1.48295 1.49388 1.54813 1.59595 1.78819 2.32480 2.56542 2.73106 3.23886 3.41799 3.63523 3.72749 3.94378 3.96061 4.05709 4.11141 4.18639 4.30177 4.35577 4.44038 4.45971 4.47508 4.61072 4.72332 4.77298 4.85858 4.87697 4.93716 4.95157 4.95667 5.01357 5.05512 5.15908 5.22690 5.24660 5.28392 5.37663 5.42187 5.45715 5.53522 5.57482 5.65738 5.68364 5.76295 5.86752 6.14801 6.28499 6.52016 6.62631 7.30531 7.36885 8.10409 8.35288 9.29473 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.005006 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.859167 B = 5592.089979 C = 8553.462605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.070 4.070 4 C -0.094 4.094 5 C 0.084 3.916 6 N -0.325 5.325 7 N -0.417 5.417 8 H 0.456 0.544 9 C 0.094 3.906 10 C -0.205 4.205 11 C -0.077 4.077 12 C 0.571 3.429 13 O -0.552 6.552 14 N -0.695 5.695 15 C 0.146 3.854 16 H 0.068 0.932 17 C 0.144 3.856 18 N -0.739 5.739 19 C -0.243 4.243 20 H 0.075 0.925 21 C -0.067 4.067 22 N -0.960 5.960 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.280 1.280 27 C -0.114 4.114 28 C -0.098 4.098 29 C -0.135 4.135 30 C -0.141 4.141 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.153 0.847 36 H 0.185 0.815 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 13.132 -6.692 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.092 4.092 4 C -0.115 4.115 5 C -0.071 4.071 6 N -0.154 5.154 7 N -0.119 5.119 8 H 0.303 0.697 9 C -0.063 4.063 10 C -0.215 4.215 11 C -0.083 4.083 12 C 0.358 3.642 13 O -0.431 6.431 14 N -0.345 5.345 15 C 0.041 3.959 16 H 0.086 0.914 17 C 0.017 3.983 18 N -0.383 5.383 19 C -0.374 4.374 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.611 5.611 23 Si 0.795 3.205 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.153 4.153 28 C -0.116 4.116 29 C -0.192 4.192 30 C -0.198 4.198 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.202 0.798 37 H 0.239 0.761 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.897 13.163 -7.264 17.999 hybrid contribution 1.198 -1.438 0.913 2.083 sum -8.699 11.725 -6.351 15.921 Atomic orbital electron populations 1.21018 0.89045 1.03916 1.03558 1.19956 0.97148 0.90994 0.99629 1.20758 0.93327 0.98080 0.97017 1.20254 0.93062 0.95327 1.02819 1.21330 0.90477 0.95310 0.99936 1.77521 1.16049 0.91028 1.30787 1.46261 1.08763 1.04735 1.52161 0.69710 1.22695 0.85633 0.99236 0.98728 1.20346 0.92860 0.92718 1.15605 1.20097 0.89996 0.93486 1.04687 1.18144 0.77827 0.84204 0.84024 1.90802 1.55467 1.65093 1.31762 1.45995 1.56821 1.23321 1.08360 1.21232 0.92678 0.84139 0.97817 0.91408 1.21116 0.85133 0.97349 0.94675 1.42451 1.01822 1.68531 1.25455 1.19543 0.90828 1.27562 0.99511 0.90718 1.25391 0.96452 1.03026 1.01125 1.69770 1.01677 1.52613 1.37038 0.85338 0.76505 0.78681 0.79946 1.20787 1.22536 1.20644 1.21963 0.93190 1.02065 0.98034 1.21241 0.97174 0.99176 0.93980 1.21775 1.01177 0.98432 0.97808 1.21809 0.94888 1.01432 1.01661 0.89592 0.92425 0.88498 0.81113 0.82939 0.79808 0.76055 0.94583 0.94655 0.79227 0.94279 0.90203 0.90412 0.90985 0.93324 0.93337 0.94037 0.92003 0.92871 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.58 71.24 0.68 -1.48 16 2 C -0.08 -1.77 5.91 -19.62 -0.12 -1.89 16 3 C -0.07 -1.36 9.45 21.88 0.21 -1.15 16 4 C -0.09 -2.19 10.02 22.36 0.22 -1.96 16 5 C 0.08 2.59 7.49 42.12 0.32 2.91 16 6 N -0.32 -10.40 12.71 -48.75 -0.62 -11.02 16 7 N -0.42 -12.21 7.20 -56.62 -0.41 -12.62 16 8 H 0.46 10.42 8.96 -213.40 -1.91 8.51 16 9 C 0.09 3.07 12.00 84.17 1.01 4.08 16 10 C -0.20 -6.75 6.35 -18.91 -0.12 -6.87 16 11 C -0.08 -2.34 5.80 -18.65 -0.11 -2.44 16 12 C 0.57 18.30 4.58 86.63 0.40 18.70 16 13 O -0.55 -20.04 12.05 -4.12 -0.05 -20.09 16 14 N -0.70 -21.32 4.47 -445.90 -1.99 -23.31 16 15 C 0.15 4.53 2.33 44.99 0.10 4.63 16 16 H 0.07 2.46 5.92 -2.39 -0.01 2.45 16 17 C 0.14 5.23 5.82 86.38 0.50 5.74 16 18 N -0.74 -34.90 5.43 -343.46 -1.87 -36.77 16 19 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 21 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 22 N -0.96 -55.29 13.06 21.65 0.28 -55.01 16 23 Si 0.97 44.71 29.55 68.60 2.03 46.73 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 C -0.11 -2.76 4.36 30.60 0.13 -2.62 16 28 C -0.10 -2.36 2.38 -10.79 -0.03 -2.39 16 29 C -0.13 -3.69 8.03 71.98 0.58 -3.11 16 30 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.27 4.73 -2.39 -0.01 1.26 16 33 H 0.10 1.22 8.07 -2.38 -0.02 1.20 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.18 6.14 8.06 -2.91 -0.02 6.11 16 37 H 0.40 12.53 8.59 -92.71 -0.80 11.73 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.38 19.02 7.33 -92.71 -0.68 18.34 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.92 2.84 -2.39 -0.01 1.92 16 45 H 0.05 1.61 4.75 -2.39 -0.01 1.60 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -67.95 397.51 0.74 -67.21 By element: Atomic # 1 Polarization: 52.30 SS G_CDS: -2.39 Total: 49.91 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.75 Total: -5.03 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -4.60 Total: -138.72 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.95 0.74 -67.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.843 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds