Wall clock time and date at job start Wed Apr 1 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40570 * 119.82572 * 2 1 4 4 C 1.35898 * 119.73007 * 180.02562 * 3 2 1 5 5 C 1.41191 * 119.34487 * 359.94349 * 4 3 2 6 6 N 1.32236 * 132.04753 * 180.02562 * 5 4 3 7 7 C 1.34580 * 109.02357 * 180.02562 * 6 5 4 8 8 C 1.47589 * 125.91512 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00005 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00354 * 0.03022 * 8 7 6 11 11 C 1.46494 * 120.00531 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47008 * 325.00296 * 11 10 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 11 10 8 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 11 10 15 15 C 1.36943 * 119.99752 * 179.72430 * 14 13 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 329.99846 * 19 17 15 23 23 C 1.53004 * 109.47171 * 84.99693 * 11 10 8 24 24 C 1.52999 * 109.46989 * 295.00630 * 23 11 10 25 25 C 1.53000 * 109.46823 * 174.99871 * 24 23 11 26 26 C 1.53002 * 109.47150 * 294.99387 * 24 23 11 27 27 C 1.36574 * 108.16363 * 0.27100 * 7 6 5 28 28 N 1.36192 * 107.09565 * 359.57221 * 27 7 6 29 29 C 1.34847 * 119.82906 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47062 * 269.97732 * 1 2 3 31 31 H 1.08997 * 109.46909 * 29.97922 * 1 2 3 32 32 H 1.09003 * 109.46545 * 149.97767 * 1 2 3 33 33 H 1.08003 * 120.13556 * 0.04562 * 3 2 1 34 34 H 1.07992 * 120.32781 * 180.02562 * 4 3 2 35 35 H 0.97009 * 119.99558 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47066 * 294.99922 * 13 11 10 37 37 H 1.08994 * 109.46974 * 175.00070 * 13 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.46462 * 55.00239 * 23 11 10 41 41 H 1.08995 * 109.46930 * 175.00449 * 23 11 10 42 42 H 1.08997 * 109.47498 * 54.99671 * 24 23 11 43 43 H 1.08997 * 109.47247 * 59.99646 * 25 24 23 44 44 H 1.09000 * 109.47485 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.47094 * 299.99726 * 25 24 23 46 46 H 1.08993 * 109.46832 * 180.02562 * 26 24 23 47 47 H 1.08997 * 109.47152 * 300.00495 * 26 24 23 48 48 H 1.09001 * 109.46642 * 60.00173 * 26 24 23 49 49 H 1.08000 * 126.44993 * 179.74412 * 27 7 6 50 50 H 1.07995 * 119.68242 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5652 1.2172 -0.0005 5 6 4.2551 -0.0147 0.0001 6 7 5.5446 -0.3076 0.0003 7 6 5.6905 -1.6454 0.0005 8 6 6.9726 -2.3765 0.0012 9 8 6.9792 -3.5923 0.0008 10 7 8.1362 -1.6963 0.0024 11 6 9.4089 -2.4219 0.0037 12 1 9.3069 -3.3332 0.5930 13 6 10.4988 -1.5389 0.6145 14 7 10.0784 -1.0945 1.9456 15 6 10.9008 -0.2926 2.6913 16 1 11.8574 0.0158 2.2961 17 6 10.5049 0.1237 3.9549 18 7 9.3392 -0.2527 4.4366 19 14 11.6264 1.2181 4.9717 20 1 11.3253 2.6427 4.6799 21 1 11.4032 0.9506 6.4152 22 1 13.0423 0.9310 4.6283 23 6 9.7911 -2.7838 -1.4329 24 6 8.7654 -3.7664 -2.0014 25 6 9.0762 -4.0318 -3.4759 26 6 8.8319 -5.0811 -1.2216 27 6 4.4466 -2.2094 -0.0057 28 7 3.5445 -1.1892 0.0001 29 6 2.1778 -1.1698 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5142 33 1 1.6656 2.1545 0.0007 34 1 4.1120 2.1485 -0.0001 35 1 8.1310 -0.7263 0.0032 36 1 10.6627 -0.6704 -0.0235 37 1 11.4242 -2.1088 0.6971 38 1 9.2193 -1.3719 2.3007 39 1 9.0624 0.0385 5.3195 40 1 9.8063 -1.8808 -2.0432 41 1 10.7789 -3.2444 -1.4410 42 1 7.7660 -3.3409 -1.9117 43 1 10.0757 -4.4573 -3.5656 44 1 8.3453 -4.7315 -3.8811 45 1 9.0288 -3.0951 -4.0315 46 1 8.1015 -5.7812 -1.6270 47 1 9.8314 -5.5066 -1.3114 48 1 8.6105 -4.8920 -0.1712 49 1 4.2210 -3.2655 -0.0111 50 1 1.6299 -2.1004 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271268701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:17 Heat of formation + Delta-G solvation = 52.458959 kcal Electronic energy + Delta-G solvation = -30314.828279 eV Core-core repulsion = 26343.286430 eV Total energy + Delta-G solvation = -3971.541848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.90861 -39.69400 -37.89980 -36.47248 -34.86459 -33.92135 -33.26313 -32.36428 -31.02504 -29.27844 -28.86191 -27.09884 -26.81710 -25.47378 -24.20831 -23.15699 -22.54692 -22.22092 -20.57919 -19.82076 -19.55840 -18.22918 -17.14403 -16.95345 -16.42949 -16.16058 -15.73309 -15.40512 -15.18962 -14.73689 -14.55304 -14.13095 -14.00631 -13.83586 -13.76747 -13.42101 -13.22851 -12.93026 -12.85594 -12.81030 -12.53855 -12.06020 -11.97013 -11.87073 -11.82976 -11.49431 -11.40609 -11.14906 -10.96296 -10.90407 -10.75327 -10.46691 -10.30044 -10.17423 -10.15831 -9.91476 -9.64086 -9.59006 -8.85516 -8.83373 -8.45007 -8.01307 -6.87064 -5.69538 -2.99080 0.48096 1.07856 2.14766 2.36708 3.23050 3.47538 3.52276 3.54239 3.57735 3.81997 3.98819 4.25955 4.40475 4.53445 4.63103 4.76021 5.00558 5.03762 5.13828 5.16552 5.23454 5.25482 5.26545 5.37523 5.55021 5.61317 5.61685 5.68236 5.73654 5.79244 5.82252 5.94786 5.96932 6.04214 6.11191 6.17015 6.20409 6.26368 6.30712 6.35168 6.40975 6.53331 6.58231 6.74721 6.76042 6.84436 6.93062 7.07724 7.62000 7.75136 8.08102 8.47827 8.65339 9.59553 10.16695 10.52003 11.52652 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007322 B = 0.003634 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.227260 B = 7703.701172 C =10824.373103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.107 4.107 3 C -0.106 4.106 4 C -0.065 4.065 5 C 0.219 3.781 6 N -0.453 5.453 7 C 0.016 3.984 8 C 0.599 3.401 9 O -0.536 6.536 10 N -0.689 5.689 11 C 0.136 3.864 12 H 0.092 0.908 13 C 0.144 3.856 14 N -0.730 5.730 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.023 4.023 28 N -0.362 5.362 29 C 0.048 3.952 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.412 0.588 36 H 0.024 0.976 37 H 0.033 0.967 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.042 0.958 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.194 0.806 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.741 -2.242 -14.734 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.130 4.130 4 C -0.085 4.085 5 C -0.026 4.026 6 N -0.174 5.174 7 C -0.118 4.118 8 C 0.383 3.617 9 O -0.414 6.414 10 N -0.339 5.339 11 C 0.031 3.969 12 H 0.110 0.890 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.161 4.161 24 C -0.112 4.112 25 C -0.203 4.203 26 C -0.195 4.195 27 C -0.159 4.159 28 N -0.034 5.034 29 C -0.073 4.073 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.249 0.751 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.221 0.779 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.095 0.905 49 H 0.211 0.789 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.860 -2.530 -14.668 22.490 hybrid contribution -0.332 0.469 0.848 1.025 sum -17.192 -2.061 -13.820 22.154 Atomic orbital electron populations 1.20679 0.89023 1.03394 1.02972 1.19477 0.97219 0.91738 1.02540 1.20952 0.93374 0.98084 1.00541 1.20368 0.93610 0.94865 0.99638 1.20980 0.87320 0.87423 1.06927 1.70902 1.13474 1.13226 1.19775 1.20767 0.93894 0.89893 1.07231 1.16821 0.82082 0.86257 0.76492 1.90770 1.86976 1.12360 1.51306 1.45782 1.04652 1.11269 1.72180 1.21423 0.82926 0.96572 0.95975 0.89013 1.20964 0.94154 0.95114 0.88166 1.42347 1.21781 1.59767 1.13619 1.19205 0.99041 1.22155 0.96743 0.91190 1.24747 0.97199 1.01219 0.97708 1.69685 1.20439 1.49399 1.18243 0.86198 0.79887 0.80470 0.79663 1.21769 1.21870 1.20808 1.22025 0.99156 0.99155 0.95775 1.21143 0.99864 0.96384 0.93781 1.21865 1.00948 1.00759 0.96720 1.21828 0.99448 0.95894 1.02292 1.22564 0.87395 0.93912 1.11981 1.42694 1.06116 1.08725 1.45816 1.21400 0.80626 1.00480 1.04789 0.90578 0.90703 0.91211 0.83974 0.82781 0.75134 0.95821 0.94891 0.77930 0.93616 0.91918 0.91076 0.90712 0.93120 0.93334 0.93372 0.93910 0.94302 0.90471 0.78901 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.00 36.01 0.36 -0.08 16 2 C -0.11 -0.81 5.85 -104.94 -0.61 -1.43 16 3 C -0.11 -0.87 9.73 -39.54 -0.38 -1.25 16 4 C -0.06 -0.72 10.11 -39.30 -0.40 -1.12 16 5 C 0.22 3.20 7.80 -156.03 -1.22 1.99 16 6 N -0.45 -7.89 11.01 -9.35 -0.10 -7.99 16 7 C 0.02 0.27 6.94 -83.45 -0.58 -0.31 16 8 C 0.60 10.81 6.37 -12.44 -0.08 10.73 16 9 O -0.54 -9.97 11.82 5.29 0.06 -9.91 16 10 N -0.69 -12.46 4.47 -54.83 -0.24 -12.71 16 11 C 0.14 2.39 2.33 -67.93 -0.16 2.24 16 12 H 0.09 1.78 5.92 -51.93 -0.31 1.47 16 13 C 0.14 2.95 5.82 -4.04 -0.02 2.92 16 14 N -0.73 -18.91 5.43 -59.91 -0.33 -19.24 16 15 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 19 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.12 -1.79 4.36 -26.73 -0.12 -1.91 16 24 C -0.09 -1.34 2.38 -90.62 -0.22 -1.55 16 25 C -0.15 -1.77 9.19 37.16 0.34 -1.42 16 26 C -0.14 -2.02 8.03 37.16 0.30 -1.72 16 27 C -0.02 -0.33 11.47 -16.22 -0.19 -0.51 16 28 N -0.36 -4.64 2.93 -62.37 -0.18 -4.82 16 29 C 0.05 0.43 10.54 -16.59 -0.17 0.26 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.07 0.22 8.07 -51.93 -0.42 -0.19 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.41 7.81 8.30 -40.82 -0.34 7.47 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 10.78 7.33 -40.82 -0.30 10.48 16 39 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.21 5.19 -51.93 -0.27 0.94 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 1.31 4.75 -51.93 -0.25 1.06 16 49 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 50 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -34.37 403.45 -10.17 -44.54 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -7.77 Total: 15.03 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -3.39 Total: -0.64 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -0.13 Total: -72.96 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.37 -10.17 -44.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271268701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.998 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds