Wall clock time and date at job start Wed Apr 1 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40570 * 119.82572 * 2 1 4 4 C 1.35898 * 119.73007 * 180.02562 * 3 2 1 5 5 C 1.41191 * 119.34487 * 359.94349 * 4 3 2 6 6 N 1.32236 * 132.04753 * 180.02562 * 5 4 3 7 7 C 1.34580 * 109.02357 * 180.02562 * 6 5 4 8 8 C 1.47589 * 125.91512 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00005 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00354 * 0.03022 * 8 7 6 11 11 C 1.46494 * 120.00531 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47008 * 325.00296 * 11 10 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 11 10 8 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 11 10 15 15 C 1.36943 * 119.99752 * 179.72430 * 14 13 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 329.99846 * 19 17 15 23 23 C 1.53004 * 109.47171 * 84.99693 * 11 10 8 24 24 C 1.52999 * 109.46989 * 295.00630 * 23 11 10 25 25 C 1.53000 * 109.46823 * 174.99871 * 24 23 11 26 26 C 1.53002 * 109.47150 * 294.99387 * 24 23 11 27 27 C 1.36574 * 108.16363 * 0.27100 * 7 6 5 28 28 N 1.36192 * 107.09565 * 359.57221 * 27 7 6 29 29 C 1.34847 * 119.82906 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47062 * 269.97732 * 1 2 3 31 31 H 1.08997 * 109.46909 * 29.97922 * 1 2 3 32 32 H 1.09003 * 109.46545 * 149.97767 * 1 2 3 33 33 H 1.08003 * 120.13556 * 0.04562 * 3 2 1 34 34 H 1.07992 * 120.32781 * 180.02562 * 4 3 2 35 35 H 0.97009 * 119.99558 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47066 * 294.99922 * 13 11 10 37 37 H 1.08994 * 109.46974 * 175.00070 * 13 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.46462 * 55.00239 * 23 11 10 41 41 H 1.08995 * 109.46930 * 175.00449 * 23 11 10 42 42 H 1.08997 * 109.47498 * 54.99671 * 24 23 11 43 43 H 1.08997 * 109.47247 * 59.99646 * 25 24 23 44 44 H 1.09000 * 109.47485 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.47094 * 299.99726 * 25 24 23 46 46 H 1.08993 * 109.46832 * 180.02562 * 26 24 23 47 47 H 1.08997 * 109.47152 * 300.00495 * 26 24 23 48 48 H 1.09001 * 109.46642 * 60.00173 * 26 24 23 49 49 H 1.08000 * 126.44993 * 179.74412 * 27 7 6 50 50 H 1.07995 * 119.68242 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5652 1.2172 -0.0005 5 6 4.2551 -0.0147 0.0001 6 7 5.5446 -0.3076 0.0003 7 6 5.6905 -1.6454 0.0005 8 6 6.9726 -2.3765 0.0012 9 8 6.9792 -3.5923 0.0008 10 7 8.1362 -1.6963 0.0024 11 6 9.4089 -2.4219 0.0037 12 1 9.3069 -3.3332 0.5930 13 6 10.4988 -1.5389 0.6145 14 7 10.0784 -1.0945 1.9456 15 6 10.9008 -0.2926 2.6913 16 1 11.8574 0.0158 2.2961 17 6 10.5049 0.1237 3.9549 18 7 9.3392 -0.2527 4.4366 19 14 11.6264 1.2181 4.9717 20 1 11.3253 2.6427 4.6799 21 1 11.4032 0.9506 6.4152 22 1 13.0423 0.9310 4.6283 23 6 9.7911 -2.7838 -1.4329 24 6 8.7654 -3.7664 -2.0014 25 6 9.0762 -4.0318 -3.4759 26 6 8.8319 -5.0811 -1.2216 27 6 4.4466 -2.2094 -0.0057 28 7 3.5445 -1.1892 0.0001 29 6 2.1778 -1.1698 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5142 33 1 1.6656 2.1545 0.0007 34 1 4.1120 2.1485 -0.0001 35 1 8.1310 -0.7263 0.0032 36 1 10.6627 -0.6704 -0.0235 37 1 11.4242 -2.1088 0.6971 38 1 9.2193 -1.3719 2.3007 39 1 9.0624 0.0385 5.3195 40 1 9.8063 -1.8808 -2.0432 41 1 10.7789 -3.2444 -1.4410 42 1 7.7660 -3.3409 -1.9117 43 1 10.0757 -4.4573 -3.5656 44 1 8.3453 -4.7315 -3.8811 45 1 9.0288 -3.0951 -4.0315 46 1 8.1015 -5.7812 -1.6270 47 1 9.8314 -5.5066 -1.3114 48 1 8.6105 -4.8920 -0.1712 49 1 4.2210 -3.2655 -0.0111 50 1 1.6299 -2.1004 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271268701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:16 Heat of formation + Delta-G solvation = 31.324962 kcal Electronic energy + Delta-G solvation = -30315.744717 eV Core-core repulsion = 26343.286430 eV Total energy + Delta-G solvation = -3972.458287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.89145 -41.04214 -38.77836 -37.84267 -36.44076 -35.11056 -34.69455 -33.24010 -32.80135 -30.72947 -29.95548 -27.95335 -27.78214 -27.18996 -25.25425 -24.59620 -23.92746 -23.10198 -22.01800 -21.14029 -20.75096 -19.38556 -19.05958 -17.89378 -17.56932 -17.24919 -17.03453 -16.78758 -16.43738 -16.01857 -15.54809 -15.44335 -15.28637 -15.13783 -14.93538 -14.63839 -14.50892 -14.35667 -14.17945 -13.66541 -13.30889 -13.22066 -13.16531 -13.02279 -12.95105 -12.80171 -12.54774 -12.45882 -12.43505 -12.31843 -12.10624 -11.92836 -11.89070 -11.63684 -11.41588 -11.38673 -11.23948 -11.00444 -10.90445 -9.96092 -9.70219 -9.01231 -8.93038 -7.93528 -5.23746 -0.34692 0.18512 1.02741 1.44918 1.46163 1.48856 1.57123 2.25250 2.33227 2.56006 2.59143 3.04280 3.39158 3.42341 3.65983 3.69609 3.89214 3.97654 4.00187 4.09611 4.14002 4.25233 4.26067 4.38977 4.41654 4.45450 4.67613 4.70763 4.79569 4.81537 4.88174 4.89923 4.90041 4.92887 5.00112 5.04582 5.10512 5.17479 5.22312 5.24264 5.30336 5.34005 5.39680 5.49718 5.55528 5.58957 5.62147 5.70234 5.95910 6.26073 6.47384 6.72612 7.25572 7.32850 8.07132 8.30982 9.29653 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007322 B = 0.003634 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.227260 B = 7703.701172 C =10824.373103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.099 4.099 3 C -0.078 4.078 4 C -0.102 4.102 5 C 0.205 3.795 6 N -0.502 5.502 7 C -0.022 4.022 8 C 0.596 3.404 9 O -0.549 6.549 10 N -0.693 5.693 11 C 0.146 3.854 12 H 0.072 0.928 13 C 0.144 3.856 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.267 1.267 23 C -0.113 4.113 24 C -0.091 4.091 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.021 4.021 28 N -0.362 5.362 29 C 0.031 3.969 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.406 0.594 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.372 0.628 39 H 0.249 0.751 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.214 0.786 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.338 -1.705 -16.051 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.101 4.101 4 C -0.122 4.122 5 C -0.041 4.041 6 N -0.224 5.224 7 C -0.155 4.155 8 C 0.382 3.618 9 O -0.428 6.428 10 N -0.341 5.341 11 C 0.041 3.959 12 H 0.090 0.910 13 C 0.018 3.982 14 N -0.386 5.386 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.192 1.192 23 C -0.152 4.152 24 C -0.109 4.109 25 C -0.197 4.197 26 C -0.189 4.189 27 C -0.157 4.157 28 N -0.032 5.032 29 C -0.089 4.089 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.198 0.802 34 H 0.177 0.823 35 H 0.241 0.759 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.231 0.769 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -18.438 -2.007 -16.034 24.517 hybrid contribution -0.043 0.349 1.207 1.257 sum -18.481 -1.658 -14.827 23.752 Atomic orbital electron populations 1.20798 0.85887 1.05061 1.04049 1.20042 0.99217 0.90867 1.00023 1.21498 0.92243 1.00072 0.96292 1.20624 0.95006 0.93896 1.02645 1.21492 0.87047 0.89107 1.06442 1.70778 1.15625 1.13602 1.22363 1.20720 0.94281 0.90376 1.10080 1.17052 0.82545 0.86275 0.75937 1.90742 1.87304 1.12735 1.52038 1.45780 1.04983 1.10812 1.72561 1.21289 0.82167 0.94898 0.97536 0.90999 1.21128 0.95322 0.95826 0.85973 1.42537 1.21009 1.59660 1.15389 1.19657 0.99381 1.21486 0.96985 0.90221 1.25622 0.98803 1.03326 0.99202 1.69873 1.22527 1.51289 1.18362 0.85092 0.78594 0.78402 0.77359 1.21380 1.22424 1.19178 1.21968 0.99986 0.99763 0.93487 1.21074 0.98575 0.95799 0.95459 1.21797 1.01864 1.01340 0.94653 1.21751 1.00302 0.96287 1.00595 1.22773 0.86865 0.94892 1.11141 1.42829 1.07382 1.07690 1.45337 1.22180 0.79089 1.02812 1.04838 0.89560 0.89017 0.89707 0.80222 0.82317 0.75899 0.94884 0.93974 0.79580 0.94266 0.91174 0.89442 0.92865 0.91797 0.92711 0.92843 0.93600 0.92864 0.93224 0.76915 0.78812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 10.00 71.24 0.71 0.30 16 2 C -0.10 -1.20 5.85 -20.07 -0.12 -1.32 16 3 C -0.08 -1.07 9.73 22.30 0.22 -0.85 16 4 C -0.10 -2.24 10.11 22.45 0.23 -2.02 16 5 C 0.21 6.24 7.80 134.20 1.05 7.29 16 6 N -0.50 -18.81 11.01 -183.49 -2.02 -20.83 16 7 C -0.02 -0.81 6.94 40.80 0.28 -0.52 16 8 C 0.60 23.10 6.37 86.71 0.55 23.65 16 9 O -0.55 -21.72 11.82 -3.99 -0.05 -21.77 16 10 N -0.69 -26.74 4.47 -445.65 -1.99 -28.73 16 11 C 0.15 5.33 2.33 44.99 0.10 5.44 16 12 H 0.07 2.94 5.92 -2.39 -0.01 2.92 16 13 C 0.14 5.99 5.82 86.38 0.50 6.50 16 14 N -0.74 -39.70 5.43 -343.46 -1.87 -41.56 16 15 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 18 N -0.97 -62.36 13.06 21.65 0.28 -62.08 16 19 Si 0.98 47.72 29.55 68.60 2.03 49.75 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C -0.11 -3.29 4.36 30.60 0.13 -3.16 16 24 C -0.09 -2.59 2.38 -10.79 -0.03 -2.61 16 25 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 26 C -0.13 -3.90 8.03 71.98 0.58 -3.32 16 27 C -0.02 -0.60 11.47 83.63 0.96 0.36 16 28 N -0.36 -9.29 2.93 -351.25 -1.03 -10.32 16 29 C 0.03 0.49 10.54 83.16 0.88 1.37 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 32 H 0.08 0.16 8.07 -2.39 -0.02 0.14 16 33 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.41 16.60 8.30 -92.70 -0.77 15.83 16 36 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.37 21.83 7.33 -92.71 -0.68 21.15 16 39 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.78 5.19 -2.39 -0.01 1.76 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 1.75 4.75 -2.39 -0.01 1.74 16 49 H 0.21 5.00 8.06 -2.91 -0.02 4.98 16 50 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -78.51 403.45 2.89 -75.62 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: -0.49 Total: 48.68 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 8.02 Total: 11.24 kcal Atomic # 7 Polarization: -156.90 SS G_CDS: -6.62 Total: -163.52 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -78.51 2.89 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271268701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.948 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds