Wall clock time and date at job start Wed Apr 1 2020 02:56:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86799 * 120.00457 * 2 1
4 4 H 1.48500 * 109.46966 * 270.00024 * 3 2 1
5 5 H 1.48496 * 109.46786 * 29.99956 * 3 2 1
6 6 H 1.48503 * 109.46995 * 150.00004 * 3 2 1
7 7 C 1.37882 * 119.99199 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00633 * 0.02562 * 7 2 1
9 9 C 1.50708 * 119.99704 * 180.02562 * 7 2 1
10 10 C 1.52989 * 109.47038 * 180.02562 * 9 7 2
11 11 N 1.46502 * 109.47219 * 180.02562 * 10 9 7
12 12 C 1.46813 * 124.36388 * 89.99491 * 11 10 9
13 13 C 1.54592 * 105.49761 * 163.08372 * 12 11 10
14 14 C 1.54134 * 101.65204 * 24.98261 * 13 12 11
15 15 C 1.52539 * 110.07613 * 94.64546 * 14 13 12
16 16 C 1.53152 * 109.31318 * 178.09930 * 15 14 13
17 17 N 1.46844 * 109.46081 * 301.74941 * 16 15 14
18 18 C 1.46897 * 110.99954 * 186.34758 * 17 16 15
19 19 C 1.50695 * 109.47189 * 170.00409 * 18 17 16
20 20 C 1.38920 * 121.01668 * 89.99539 * 19 18 17
21 21 C 1.38575 * 117.97260 * 179.74643 * 20 19 18
22 22 N 1.31958 * 119.84569 * 0.25917 * 21 20 19
23 23 N 1.28348 * 122.18407 * 359.97438 * 22 21 20
24 24 C 1.31965 * 122.17798 * 0.02562 * 23 22 21
25 25 C 1.46857 * 111.31416 * 62.16883 * 17 16 15
26 26 C 1.52542 * 110.08335 * 216.69698 * 14 13 12
27 27 C 1.34581 * 124.36024 * 270.00002 * 11 10 9
28 28 O 1.21283 * 125.02657 * 0.71854 * 27 11 10
29 29 H 0.96999 * 119.99257 * 0.02562 * 1 2 3
30 30 H 1.08995 * 109.46747 * 59.99891 * 9 7 2
31 31 H 1.09003 * 109.46913 * 300.00562 * 9 7 2
32 32 H 1.08995 * 109.47644 * 60.00191 * 10 9 7
33 33 H 1.09003 * 109.47524 * 299.99938 * 10 9 7
34 34 H 1.08998 * 110.24515 * 44.07777 * 12 11 10
35 35 H 1.08999 * 110.31732 * 282.12787 * 12 11 10
36 36 H 1.09006 * 110.98886 * 266.89438 * 13 12 11
37 37 H 1.08997 * 110.99332 * 143.07416 * 13 12 11
38 38 H 1.09001 * 109.49788 * 58.15901 * 15 14 13
39 39 H 1.08996 * 109.50217 * 298.05546 * 15 14 13
40 40 H 1.08998 * 109.47042 * 181.75318 * 16 15 14
41 41 H 1.09003 * 109.47164 * 61.74941 * 16 15 14
42 42 H 1.08999 * 109.47008 * 50.00133 * 18 17 16
43 43 H 1.09000 * 109.47073 * 289.99827 * 18 17 16
44 44 H 1.08002 * 121.01553 * 0.02995 * 20 19 18
45 45 H 1.07995 * 120.07362 * 180.23154 * 21 20 19
46 46 H 1.07997 * 120.07467 * 180.02562 * 24 23 22
47 47 H 1.08989 * 109.47756 * 57.82255 * 25 17 16
48 48 H 1.08993 * 109.47090 * 177.83937 * 25 17 16
49 49 H 1.08999 * 109.49746 * 301.84740 * 26 14 13
50 50 H 1.08999 * 109.49716 * 61.94484 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4468 2.6526 0.7000
6 1 3.5469 1.4399 0.7001
7 6 2.0044 -1.1942 0.0005
8 1 1.4644 -2.1294 0.0005
9 6 3.5115 -1.1943 0.0011
10 6 4.0213 -2.6368 0.0010
11 7 5.4863 -2.6369 0.0022
12 6 6.3140 -2.6374 1.2147
13 6 7.7240 -3.0709 0.7523
14 6 7.7067 -2.6542 -0.7316
15 6 8.3207 -1.2672 -0.8931
16 6 8.3381 -0.8907 -2.3775
17 7 9.1028 -1.8948 -3.1280
18 6 9.2693 -1.4899 -4.5302
19 6 10.2555 -2.4083 -5.2046
20 6 9.8335 -3.5694 -5.8400
21 6 10.7935 -4.3652 -6.4444
22 7 12.0638 -4.0109 -6.3989
23 7 12.4543 -2.9406 -5.8080
24 6 11.6115 -2.1228 -5.2059
25 6 8.4789 -3.2210 -3.0338
26 6 8.4666 -3.6760 -1.5715
27 6 6.2468 -2.6366 -1.1082
28 8 5.8208 -2.6237 -2.2437
29 1 -0.4849 0.8401 -0.0004
30 1 3.8744 -0.6803 0.8911
31 1 3.8752 -0.6806 -0.8888
32 1 3.6584 -3.1504 -0.8892
33 1 3.6576 -3.1508 0.8907
34 1 5.9198 -3.3489 1.9402
35 1 6.3501 -1.6382 1.6487
36 1 7.8541 -4.1484 0.8537
37 1 8.4974 -2.5325 1.3000
38 1 9.3403 -1.2735 -0.5076
39 1 7.7267 -0.5396 -0.3402
40 1 8.8047 0.0868 -2.4990
41 1 7.3162 -0.8550 -2.7553
42 1 9.6400 -0.4656 -4.5710
43 1 8.3088 -1.5493 -5.0421
44 1 8.7886 -3.8412 -5.8661
45 1 10.5027 -5.2735 -6.9512
46 1 11.9772 -1.2308 -4.7192
47 1 7.4562 -3.1688 -3.4068
48 1 9.0478 -3.9333 -3.6312
49 1 9.4906 -3.7571 -1.2071
50 1 7.9753 -4.6461 -1.4965
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001273271146.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:56:04
Heat of formation + Delta-G solvation = 27.060507 kcal
Electronic energy + Delta-G solvation = -30798.005543 eV
Core-core repulsion = 26825.362336 eV
Total energy + Delta-G solvation = -3972.643208 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.44658 -41.05310 -38.26021 -36.28838 -35.30440 -33.69775 -32.89483 -32.57374
-31.15313 -30.80032 -28.96918 -27.33016 -25.54595 -24.92979 -24.61474 -23.44241
-22.58885 -21.73390 -21.18959 -20.24397 -18.46131 -17.83380 -17.09659 -17.01556
-16.53925 -16.25898 -15.96351 -15.67073 -15.09745 -15.04449 -14.78900 -14.54794
-14.32032 -14.06500 -13.86392 -13.55215 -13.37867 -13.13239 -12.90730 -12.77267
-12.68834 -12.56547 -12.28915 -12.16788 -11.92025 -11.69866 -11.52940 -11.29556
-11.11756 -11.06744 -10.64088 -10.53789 -10.47236 -10.32884 -10.18877 -10.18173
-9.97974 -9.89934 -9.42507 -9.25299 -8.62182 -8.43241 -8.24909 -6.12951
-4.12203 0.44150 0.64900 2.84035 3.21277 3.24854 3.31853 3.34191
3.36273 3.73402 3.86535 4.14147 4.19075 4.24386 4.32490 4.35120
4.37509 4.47614 4.53828 4.78867 4.90555 4.95596 5.04722 5.11512
5.14399 5.21152 5.22990 5.28892 5.34811 5.46183 5.48768 5.57963
5.59509 5.65227 5.67651 5.69575 5.75221 5.84714 5.87101 5.90265
5.91424 5.99140 6.12231 6.23107 6.51540 6.71773 6.77408 6.82745
7.11278 7.23749 7.55645 7.68136 8.40272 8.42469 8.49786 8.89912
9.48752 11.00131
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016497 B = 0.002579 C = 0.002453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1696.835606 B =10856.193781 C =11412.915750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.070 3.930
3 Si 0.881 3.119
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.267 1.267
7 C -0.522 4.522
8 H 0.074 0.926
9 C -0.023 4.023
10 C 0.136 3.864
11 N -0.613 5.613
12 C 0.100 3.900
13 C -0.125 4.125
14 C -0.095 4.095
15 C -0.091 4.091
16 C 0.050 3.950
17 N -0.529 5.529
18 C 0.091 3.909
19 C -0.068 4.068
20 C -0.116 4.116
21 C 0.040 3.960
22 N -0.250 5.250
23 N -0.247 5.247
24 C 0.059 3.941
25 C 0.037 3.963
26 C -0.087 4.087
27 C 0.522 3.478
28 O -0.528 6.528
29 H 0.264 0.736
30 H 0.016 0.984
31 H 0.014 0.986
32 H 0.075 0.925
33 H 0.071 0.929
34 H 0.077 0.923
35 H 0.070 0.930
36 H 0.081 0.919
37 H 0.089 0.911
38 H 0.082 0.918
39 H 0.073 0.927
40 H 0.077 0.923
41 H 0.053 0.947
42 H 0.092 0.908
43 H 0.056 0.944
44 H 0.149 0.851
45 H 0.171 0.829
46 H 0.171 0.829
47 H 0.070 0.930
48 H 0.068 0.932
49 H 0.076 0.924
50 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.826 -5.965 -4.009 23.931
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.132 4.132
3 Si 0.708 3.292
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.192 1.192
7 C -0.561 4.561
8 H 0.092 0.908
9 C -0.061 4.061
10 C 0.016 3.984
11 N -0.346 5.346
12 C -0.024 4.024
13 C -0.162 4.162
14 C -0.099 4.099
15 C -0.130 4.130
16 C -0.077 4.077
17 N -0.254 5.254
18 C -0.037 4.037
19 C -0.080 4.080
20 C -0.146 4.146
21 C -0.124 4.124
22 N -0.092 5.092
23 N -0.088 5.088
24 C -0.106 4.106
25 C -0.091 4.091
26 C -0.125 4.125
27 C 0.308 3.692
28 O -0.406 6.406
29 H 0.074 0.926
30 H 0.035 0.965
31 H 0.033 0.967
32 H 0.094 0.906
33 H 0.090 0.910
34 H 0.096 0.904
35 H 0.088 0.912
36 H 0.100 0.900
37 H 0.108 0.892
38 H 0.100 0.900
39 H 0.092 0.908
40 H 0.095 0.905
41 H 0.071 0.929
42 H 0.111 0.889
43 H 0.074 0.926
44 H 0.166 0.834
45 H 0.188 0.812
46 H 0.189 0.811
47 H 0.088 0.912
48 H 0.086 0.914
49 H 0.094 0.906
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 24.367 -6.222 -4.787 25.600
hybrid contribution -2.191 1.315 0.217 2.564
sum 22.176 -4.907 -4.570 23.168
Atomic orbital electron populations
1.69906 1.06248 1.27010 1.50656 1.24982 0.94726 0.99135 0.94352
0.86760 0.80214 0.83605 0.78580 1.20259 1.21272 1.19190 1.20955
0.88880 0.94706 1.51523 0.90822 1.19873 0.97342 0.92254 0.96617
1.21591 0.74430 1.00166 1.02187 1.48634 1.07576 1.71986 1.06357
1.22079 0.90139 1.01943 0.88223 1.22696 0.97041 1.02289 0.94209
1.21084 0.94275 0.98024 0.96512 1.21392 1.01329 0.94117 0.96114
1.22167 0.97428 0.94516 0.93632 1.61983 1.50966 1.03065 1.09362
1.21005 0.96429 0.97424 0.88834 1.21047 0.95994 0.95601 0.95310
1.22436 1.02197 0.94075 0.95857 1.24306 0.90643 1.00458 0.96952
1.72984 1.15854 1.08797 1.11543 1.73031 1.31811 0.99069 1.04894
1.24229 0.90398 1.00125 0.95817 1.22409 0.99606 0.89935 0.97134
1.21335 1.00145 0.96944 0.94112 1.20474 0.88118 0.75746 0.84822
1.90627 1.78350 1.50767 1.20818 0.92603 0.96541 0.96718 0.90626
0.91012 0.90415 0.91181 0.90016 0.89232 0.89973 0.90819 0.90464
0.92904 0.88925 0.92620 0.83361 0.81163 0.81140 0.91182 0.91362
0.90571 0.91333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16
2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16
3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16
4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16
7 C -0.52 -14.66 9.66 -34.43 -0.33 -14.99 16
8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16
9 C -0.02 -0.53 4.37 -27.88 -0.12 -0.66 16
10 C 0.14 2.66 5.87 -4.05 -0.02 2.64 16
11 N -0.61 -9.88 2.94 -172.48 -0.51 -10.38 16
12 C 0.10 1.16 7.36 -3.03 -0.02 1.14 16
13 C -0.12 -1.11 6.21 -25.30 -0.16 -1.27 16
14 C -0.10 -1.07 0.55 -155.50 -0.09 -1.16 16
15 C -0.09 -0.95 4.77 -26.89 -0.13 -1.08 16
16 C 0.05 0.55 5.24 -3.78 -0.02 0.53 16
17 N -0.53 -5.24 4.63 -235.97 -1.09 -6.33 16
18 C 0.09 0.77 5.17 -4.98 -0.03 0.75 16
19 C -0.07 -0.58 4.91 -104.25 -0.51 -1.09 16
20 C -0.12 -0.92 8.14 -39.20 -0.32 -1.24 16
21 C 0.04 0.34 11.31 -17.37 -0.20 0.14 16
22 N -0.25 -2.86 11.50 30.55 0.35 -2.51 16
23 N -0.25 -2.87 11.50 30.55 0.35 -2.52 16
24 C 0.06 0.54 11.03 -17.37 -0.19 0.35 16
25 C 0.04 0.39 4.97 -3.77 -0.02 0.38 16
26 C -0.09 -0.89 4.77 -26.89 -0.13 -1.02 16
27 C 0.52 8.33 6.32 -11.03 -0.07 8.26 16
28 O -0.53 -10.22 13.85 5.56 0.08 -10.14 16
29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
31 H 0.01 0.37 7.57 -51.93 -0.39 -0.03 16
32 H 0.08 1.59 7.94 -51.93 -0.41 1.18 16
33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.08 0.64 7.89 -51.93 -0.41 0.24 16
37 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16
38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
40 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16
41 H 0.05 0.75 6.68 -51.93 -0.35 0.40 16
42 H 0.09 0.65 7.95 -51.93 -0.41 0.23 16
43 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16
44 H 0.15 0.96 8.00 -52.49 -0.42 0.54 16
45 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16
46 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16
47 H 0.07 0.95 5.78 -51.94 -0.30 0.65 16
48 H 0.07 0.67 5.75 -51.93 -0.30 0.37 16
49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
LS Contribution 390.86 15.07 5.89 5.89
Total: -1.00 -34.41 390.86 -9.28 -43.69
By element:
Atomic # 1 Polarization: 6.40 SS G_CDS: -8.00 Total: -1.61 kcal
Atomic # 6 Polarization: -3.95 SS G_CDS: -2.45 Total: -6.41 kcal
Atomic # 7 Polarization: -48.29 SS G_CDS: -0.12 Total: -48.42 kcal
Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -34.41 -9.28 -43.69 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273271146.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.750 kcal
(2) G-P(sol) polarization free energy of solvation -34.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds