Wall clock time and date at job start Wed Apr 1 2020 02:56:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86799 * 120.00457 * 2 1
4 4 H 1.48500 * 109.46966 * 270.00024 * 3 2 1
5 5 H 1.48496 * 109.46786 * 29.99956 * 3 2 1
6 6 H 1.48503 * 109.46995 * 150.00004 * 3 2 1
7 7 C 1.37882 * 119.99199 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00633 * 0.02562 * 7 2 1
9 9 C 1.50708 * 119.99704 * 180.02562 * 7 2 1
10 10 C 1.52989 * 109.47038 * 180.02562 * 9 7 2
11 11 N 1.46502 * 109.47219 * 180.02562 * 10 9 7
12 12 C 1.46813 * 124.36388 * 89.99491 * 11 10 9
13 13 C 1.54592 * 105.49761 * 163.08372 * 12 11 10
14 14 C 1.54134 * 101.65204 * 24.98261 * 13 12 11
15 15 C 1.52539 * 110.07613 * 94.64546 * 14 13 12
16 16 C 1.53152 * 109.31318 * 178.09930 * 15 14 13
17 17 N 1.46844 * 109.46081 * 301.74941 * 16 15 14
18 18 C 1.46897 * 110.99954 * 186.34758 * 17 16 15
19 19 C 1.50695 * 109.47189 * 170.00409 * 18 17 16
20 20 C 1.38920 * 121.01668 * 89.99539 * 19 18 17
21 21 C 1.38575 * 117.97260 * 179.74643 * 20 19 18
22 22 N 1.31958 * 119.84569 * 0.25917 * 21 20 19
23 23 N 1.28348 * 122.18407 * 359.97438 * 22 21 20
24 24 C 1.31965 * 122.17798 * 0.02562 * 23 22 21
25 25 C 1.46857 * 111.31416 * 62.16883 * 17 16 15
26 26 C 1.52542 * 110.08335 * 216.69698 * 14 13 12
27 27 C 1.34581 * 124.36024 * 270.00002 * 11 10 9
28 28 O 1.21283 * 125.02657 * 0.71854 * 27 11 10
29 29 H 0.96999 * 119.99257 * 0.02562 * 1 2 3
30 30 H 1.08995 * 109.46747 * 59.99891 * 9 7 2
31 31 H 1.09003 * 109.46913 * 300.00562 * 9 7 2
32 32 H 1.08995 * 109.47644 * 60.00191 * 10 9 7
33 33 H 1.09003 * 109.47524 * 299.99938 * 10 9 7
34 34 H 1.08998 * 110.24515 * 44.07777 * 12 11 10
35 35 H 1.08999 * 110.31732 * 282.12787 * 12 11 10
36 36 H 1.09006 * 110.98886 * 266.89438 * 13 12 11
37 37 H 1.08997 * 110.99332 * 143.07416 * 13 12 11
38 38 H 1.09001 * 109.49788 * 58.15901 * 15 14 13
39 39 H 1.08996 * 109.50217 * 298.05546 * 15 14 13
40 40 H 1.08998 * 109.47042 * 181.75318 * 16 15 14
41 41 H 1.09003 * 109.47164 * 61.74941 * 16 15 14
42 42 H 1.08999 * 109.47008 * 50.00133 * 18 17 16
43 43 H 1.09000 * 109.47073 * 289.99827 * 18 17 16
44 44 H 1.08002 * 121.01553 * 0.02995 * 20 19 18
45 45 H 1.07995 * 120.07362 * 180.23154 * 21 20 19
46 46 H 1.07997 * 120.07467 * 180.02562 * 24 23 22
47 47 H 1.08989 * 109.47756 * 57.82255 * 25 17 16
48 48 H 1.08993 * 109.47090 * 177.83937 * 25 17 16
49 49 H 1.08999 * 109.49746 * 301.84740 * 26 14 13
50 50 H 1.08999 * 109.49716 * 61.94484 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4468 2.6526 0.7000
6 1 3.5469 1.4399 0.7001
7 6 2.0044 -1.1942 0.0005
8 1 1.4644 -2.1294 0.0005
9 6 3.5115 -1.1943 0.0011
10 6 4.0213 -2.6368 0.0010
11 7 5.4863 -2.6369 0.0022
12 6 6.3140 -2.6374 1.2147
13 6 7.7240 -3.0709 0.7523
14 6 7.7067 -2.6542 -0.7316
15 6 8.3207 -1.2672 -0.8931
16 6 8.3381 -0.8907 -2.3775
17 7 9.1028 -1.8948 -3.1280
18 6 9.2693 -1.4899 -4.5302
19 6 10.2555 -2.4083 -5.2046
20 6 9.8335 -3.5694 -5.8400
21 6 10.7935 -4.3652 -6.4444
22 7 12.0638 -4.0109 -6.3989
23 7 12.4543 -2.9406 -5.8080
24 6 11.6115 -2.1228 -5.2059
25 6 8.4789 -3.2210 -3.0338
26 6 8.4666 -3.6760 -1.5715
27 6 6.2468 -2.6366 -1.1082
28 8 5.8208 -2.6237 -2.2437
29 1 -0.4849 0.8401 -0.0004
30 1 3.8744 -0.6803 0.8911
31 1 3.8752 -0.6806 -0.8888
32 1 3.6584 -3.1504 -0.8892
33 1 3.6576 -3.1508 0.8907
34 1 5.9198 -3.3489 1.9402
35 1 6.3501 -1.6382 1.6487
36 1 7.8541 -4.1484 0.8537
37 1 8.4974 -2.5325 1.3000
38 1 9.3403 -1.2735 -0.5076
39 1 7.7267 -0.5396 -0.3402
40 1 8.8047 0.0868 -2.4990
41 1 7.3162 -0.8550 -2.7553
42 1 9.6400 -0.4656 -4.5710
43 1 8.3088 -1.5493 -5.0421
44 1 8.7886 -3.8412 -5.8661
45 1 10.5027 -5.2735 -6.9512
46 1 11.9772 -1.2308 -4.7192
47 1 7.4562 -3.1688 -3.4068
48 1 9.0478 -3.9333 -3.6312
49 1 9.4906 -3.7571 -1.2071
50 1 7.9753 -4.6461 -1.4965
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001273271146.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:56:03
Heat of formation + Delta-G solvation = 3.403864 kcal
Electronic energy + Delta-G solvation = -30799.031372 eV
Core-core repulsion = 26825.362336 eV
Total energy + Delta-G solvation = -3973.669037 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.31445 -41.90712 -39.18342 -37.51793 -36.44166 -35.20674 -34.01680 -33.52284
-32.38430 -31.84386 -30.16782 -28.15234 -27.12883 -25.68384 -25.54012 -24.27647
-23.38737 -23.23411 -22.09928 -21.55110 -19.61160 -19.07600 -18.53750 -17.68514
-17.47404 -17.14441 -16.98728 -16.81456 -16.32670 -16.03253 -15.84966 -15.65015
-15.36580 -15.17709 -14.88658 -14.66797 -14.60426 -14.31444 -14.28219 -13.96877
-13.61276 -13.50359 -13.35788 -13.10290 -13.05870 -12.96358 -12.77825 -12.49307
-12.20485 -12.08331 -11.99000 -11.79359 -11.79265 -11.54596 -11.38237 -11.30946
-11.04838 -10.89975 -10.84803 -10.69912 -10.47773 -9.57904 -9.30824 -8.36588
-6.41730 -0.25220 0.00867 1.29247 1.30388 1.41952 1.64276 2.14257
2.28981 2.50976 2.97938 2.98366 3.22720 3.30203 3.46840 3.50198
3.56882 3.70033 3.74090 3.88910 3.98295 4.03550 4.23229 4.26963
4.31518 4.34497 4.45429 4.48749 4.53840 4.56654 4.60485 4.66488
4.72450 4.75143 4.77448 4.82333 4.86816 4.95368 4.98877 5.04393
5.08863 5.12058 5.13631 5.23524 5.26044 5.29050 5.32533 5.46699
5.73509 5.97126 6.00282 6.17111 6.31955 6.64813 7.21999 7.27143
7.72282 8.79723
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016497 B = 0.002579 C = 0.002453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1696.835606 B =10856.193781 C =11412.915750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C 0.009 3.991
3 Si 0.949 3.051
4 H -0.276 1.276
5 H -0.277 1.277
6 H -0.246 1.246
7 C -0.534 4.534
8 H 0.038 0.962
9 C -0.011 4.011
10 C 0.148 3.852
11 N -0.622 5.622
12 C 0.090 3.910
13 C -0.109 4.109
14 C -0.088 4.088
15 C -0.090 4.090
16 C 0.050 3.950
17 N -0.519 5.519
18 C 0.092 3.908
19 C -0.068 4.068
20 C -0.116 4.116
21 C 0.043 3.957
22 N -0.283 5.283
23 N -0.279 5.279
24 C 0.061 3.939
25 C 0.039 3.961
26 C -0.085 4.085
27 C 0.508 3.492
28 O -0.573 6.573
29 H 0.268 0.732
30 H 0.028 0.972
31 H -0.003 1.003
32 H 0.048 0.952
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.075 0.925
36 H 0.097 0.903
37 H 0.123 0.877
38 H 0.113 0.887
39 H 0.067 0.933
40 H 0.097 0.903
41 H 0.012 0.988
42 H 0.111 0.889
43 H 0.044 0.956
44 H 0.161 0.839
45 H 0.199 0.801
46 H 0.193 0.807
47 H 0.036 0.964
48 H 0.077 0.923
49 H 0.100 0.900
50 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.135 -5.318 -2.461 26.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.189 4.189
3 Si 0.772 3.228
4 H -0.202 1.202
5 H -0.202 1.202
6 H -0.169 1.169
7 C -0.572 4.572
8 H 0.056 0.944
9 C -0.049 4.049
10 C 0.026 3.974
11 N -0.354 5.354
12 C -0.032 4.032
13 C -0.147 4.147
14 C -0.091 4.091
15 C -0.127 4.127
16 C -0.078 4.078
17 N -0.243 5.243
18 C -0.036 4.036
19 C -0.080 4.080
20 C -0.145 4.145
21 C -0.122 4.122
22 N -0.124 5.124
23 N -0.119 5.119
24 C -0.104 4.104
25 C -0.089 4.089
26 C -0.123 4.123
27 C 0.297 3.703
28 O -0.453 6.453
29 H 0.077 0.923
30 H 0.046 0.954
31 H 0.016 0.984
32 H 0.067 0.933
33 H 0.104 0.896
34 H 0.112 0.888
35 H 0.094 0.906
36 H 0.116 0.884
37 H 0.142 0.858
38 H 0.131 0.869
39 H 0.085 0.915
40 H 0.115 0.885
41 H 0.030 0.970
42 H 0.130 0.870
43 H 0.062 0.938
44 H 0.178 0.822
45 H 0.215 0.785
46 H 0.210 0.790
47 H 0.054 0.946
48 H 0.095 0.905
49 H 0.118 0.882
50 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 27.725 -5.596 -3.213 28.466
hybrid contribution -3.349 1.040 -0.326 3.522
sum 24.376 -4.556 -3.539 25.050
Atomic orbital electron populations
1.70049 1.08118 1.28288 1.52057 1.25948 0.95624 1.03345 0.93939
0.85680 0.79681 0.78590 0.78805 1.20211 1.20211 1.16894 1.21288
0.91373 0.93516 1.51022 0.94351 1.19704 0.94303 0.94904 0.95990
1.21125 0.77389 0.97325 1.01597 1.48722 1.06210 1.71903 1.08529
1.22429 0.91072 1.02984 0.86715 1.22766 0.95976 1.03794 0.92118
1.21103 0.90442 0.99188 0.98369 1.21454 1.02713 0.93101 0.95478
1.22175 0.95459 0.95858 0.94305 1.62055 1.49813 1.02440 1.10005
1.21044 0.95967 0.98493 0.88053 1.21065 0.95822 0.95710 0.95359
1.22650 1.02780 0.93821 0.95262 1.24723 0.89759 1.01227 0.96463
1.72896 1.17393 1.09404 1.12660 1.72953 1.33018 0.99815 1.06108
1.24537 0.90349 1.00325 0.95216 1.22335 0.97837 0.90805 0.97903
1.21363 1.01134 0.96385 0.93378 1.21473 0.90375 0.74453 0.84039
1.90607 1.79655 1.52323 1.22698 0.92297 0.95388 0.98430 0.93306
0.89627 0.88839 0.90639 0.88397 0.85837 0.86875 0.91476 0.88502
0.97002 0.87043 0.93779 0.82158 0.78454 0.78973 0.94599 0.90472
0.88151 0.91616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16
2 C 0.01 0.53 5.47 84.66 0.46 1.00 16
3 Si 0.95 44.68 27.47 68.60 1.88 46.56 16
4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16
7 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16
8 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16
9 C -0.01 -0.51 4.37 29.85 0.13 -0.38 16
10 C 0.15 5.87 5.87 86.38 0.51 6.38 16
11 N -0.62 -19.51 2.94 -818.09 -2.40 -21.91 16
12 C 0.09 1.81 7.36 86.86 0.64 2.45 16
13 C -0.11 -1.47 6.21 31.52 0.20 -1.27 16
14 C -0.09 -1.74 0.55 -52.82 -0.03 -1.77 16
15 C -0.09 -1.57 4.77 30.49 0.15 -1.42 16
16 C 0.05 1.00 5.24 86.36 0.45 1.45 16
17 N -0.52 -9.26 4.63 -900.48 -4.17 -13.43 16
18 C 0.09 1.43 5.17 85.56 0.44 1.88 16
19 C -0.07 -1.05 4.91 -19.62 -0.10 -1.14 16
20 C -0.12 -1.69 8.14 22.51 0.18 -1.51 16
21 C 0.04 0.67 11.31 84.75 0.96 1.63 16
22 N -0.28 -6.26 11.50 -57.27 -0.66 -6.91 16
23 N -0.28 -6.23 11.50 -57.26 -0.66 -6.89 16
24 C 0.06 1.01 11.03 84.75 0.93 1.94 16
25 C 0.04 0.79 4.97 86.36 0.43 1.22 16
26 C -0.08 -1.51 4.77 30.49 0.15 -1.36 16
27 C 0.51 16.05 6.32 87.71 0.55 16.60 16
28 O -0.57 -23.09 13.85 -3.04 -0.04 -23.13 16
29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
30 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16
31 H 0.00 -0.14 7.57 -2.39 -0.02 -0.15 16
32 H 0.05 2.17 7.94 -2.39 -0.02 2.15 16
33 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16
34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16
35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
36 H 0.10 1.06 7.89 -2.38 -0.02 1.05 16
37 H 0.12 0.93 7.87 -2.39 -0.02 0.91 16
38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
40 H 0.10 1.53 8.01 -2.39 -0.02 1.51 16
41 H 0.01 0.34 6.68 -2.39 -0.02 0.32 16
42 H 0.11 1.30 7.95 -2.39 -0.02 1.28 16
43 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16
44 H 0.16 1.91 8.00 -2.91 -0.02 1.88 16
45 H 0.20 1.75 8.06 -2.91 -0.02 1.72 16
46 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16
47 H 0.04 1.00 5.78 -2.39 -0.01 0.99 16
48 H 0.08 1.40 5.75 -2.39 -0.01 1.39 16
49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
Total: -1.00 -79.36 390.86 1.42 -77.93
By element:
Atomic # 1 Polarization: 10.80 SS G_CDS: 0.87 Total: 11.68 kcal
Atomic # 6 Polarization: -11.29 SS G_CDS: 6.30 Total: -4.98 kcal
Atomic # 7 Polarization: -100.46 SS G_CDS: -7.59 Total: -108.06 kcal
Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal
Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal
Total: -79.36 1.42 -77.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273271146.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.335 kcal
(2) G-P(sol) polarization free energy of solvation -79.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds