Wall clock time and date at job start Wed Apr 1 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46965 * 269.99570 * 3 2 1 5 5 H 1.48502 * 109.47305 * 29.99536 * 3 2 1 6 6 H 1.48499 * 109.47111 * 149.99500 * 3 2 1 7 7 C 1.37875 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00454 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47414 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.46914 * 124.34950 * 89.99843 * 11 10 9 13 13 C 1.53837 * 105.34445 * 163.57034 * 12 11 10 14 14 C 1.53965 * 102.46268 * 24.71611 * 13 12 11 15 15 C 1.34491 * 124.35128 * 269.99885 * 11 10 9 16 16 O 1.21285 * 124.94864 * 0.38092 * 15 11 10 17 17 C 1.52234 * 110.58672 * 142.56215 * 13 12 11 18 18 C 1.53262 * 109.35528 * 66.38233 * 17 13 12 19 19 C 1.53122 * 109.06137 * 56.44020 * 18 17 13 20 20 C 1.53035 * 109.41910 * 301.74242 * 19 18 17 21 21 N 1.45972 * 110.75030 * 266.61287 * 13 12 11 22 22 C 1.46897 * 110.99980 * 60.36338 * 21 13 12 23 23 C 1.50698 * 109.47375 * 190.00434 * 22 21 13 24 24 C 1.38928 * 121.01145 * 269.71689 * 23 22 21 25 25 C 1.38571 * 117.97142 * 179.78137 * 24 23 22 26 26 N 1.31967 * 119.84586 * 0.50409 * 25 24 23 27 27 N 1.28341 * 122.18036 * 359.73419 * 26 25 24 28 28 C 1.31966 * 122.18139 * 0.02562 * 27 26 25 29 29 H 0.97001 * 120.00344 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47287 * 59.99707 * 9 7 2 31 31 H 1.09003 * 109.46636 * 299.99834 * 9 7 2 32 32 H 1.08997 * 109.47086 * 59.99641 * 10 9 7 33 33 H 1.08999 * 109.46631 * 300.00145 * 10 9 7 34 34 H 1.08998 * 110.26892 * 44.60370 * 12 11 10 35 35 H 1.08994 * 110.27175 * 282.53875 * 12 11 10 36 36 H 1.08997 * 110.51192 * 94.51920 * 14 13 12 37 37 H 1.08997 * 110.51143 * 217.22999 * 14 13 12 38 38 H 1.09000 * 109.49460 * 306.41613 * 17 13 12 39 39 H 1.08998 * 109.51408 * 186.35646 * 17 13 12 40 40 H 1.08998 * 109.53574 * 296.56525 * 18 17 13 41 41 H 1.09003 * 109.60937 * 176.35478 * 18 17 13 42 42 H 1.09002 * 109.48215 * 61.73140 * 19 18 17 43 43 H 1.08999 * 109.48244 * 181.75896 * 19 18 17 44 44 H 1.08997 * 109.46924 * 179.76410 * 20 19 18 45 45 H 1.08998 * 109.47193 * 299.76446 * 20 19 18 46 46 H 1.09004 * 109.47436 * 310.00161 * 22 21 13 47 47 H 1.09003 * 109.47370 * 69.99917 * 22 21 13 48 48 H 1.07997 * 121.01258 * 0.02562 * 24 23 22 49 49 H 1.07997 * 120.07344 * 180.21477 * 25 24 23 50 50 H 1.08006 * 120.07874 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 1.0978 -5.6491 -1.2114 13 6 0.7591 -7.0751 -0.7441 14 6 0.4079 -6.8637 0.7400 15 6 1.1337 -5.5878 1.1118 16 8 1.3427 -5.2129 2.2462 17 6 -0.4425 -7.6167 -1.5058 18 6 -0.0696 -7.7965 -2.9815 19 6 1.1527 -8.7135 -3.0802 20 6 2.3117 -8.1034 -2.2888 21 7 1.9174 -7.9529 -0.8806 22 6 3.0420 -7.4707 -0.0678 23 6 4.2845 -8.2483 -0.4177 24 6 4.6134 -9.4152 0.2608 25 6 5.7680 -10.0825 -0.1157 26 7 6.5202 -9.5976 -1.0856 27 7 6.2189 -8.5170 -1.7090 28 6 5.1370 -7.8181 -1.4217 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6044 0.8905 33 1 2.8719 -3.6043 -0.8895 34 1 1.9133 -5.6723 -1.9342 35 1 0.2184 -5.1760 -1.6483 36 1 -0.6680 -6.7411 0.8641 37 1 0.7700 -7.6980 1.3407 38 1 -1.2722 -6.9146 -1.4234 39 1 -0.7369 -8.5783 -1.0854 40 1 0.1662 -6.8263 -3.4187 41 1 -0.9058 -8.2447 -3.5182 42 1 0.9069 -9.6925 -2.6686 43 1 1.4430 -8.8211 -4.1253 44 1 3.1810 -8.7576 -2.3551 45 1 2.5600 -7.1263 -2.7031 46 1 3.2075 -6.4121 -0.2681 47 1 2.8123 -7.6089 0.9888 48 1 3.9861 -9.7928 1.0547 49 1 6.0540 -10.9948 0.3865 50 1 4.9160 -6.9133 -1.9686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273271549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:07 Heat of formation + Delta-G solvation = 32.397113 kcal Electronic energy + Delta-G solvation = -31587.726891 eV Core-core repulsion = 27615.315096 eV Total energy + Delta-G solvation = -3972.411795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83614 -40.98017 -38.43401 -35.67662 -35.28845 -33.90523 -32.93103 -32.53204 -32.04151 -29.85321 -28.19345 -27.72995 -26.11032 -24.93912 -24.59258 -24.11819 -22.23700 -21.90316 -21.26621 -19.58541 -18.44743 -17.80046 -17.15413 -17.00027 -16.73825 -16.42284 -15.77756 -15.49498 -15.06832 -14.97282 -14.76895 -14.62940 -14.43206 -14.18557 -13.80632 -13.62697 -13.51294 -13.12522 -12.89206 -12.75325 -12.60362 -12.46023 -12.31060 -12.20836 -11.76297 -11.54609 -11.38533 -11.12869 -10.99462 -10.88013 -10.84869 -10.77882 -10.69673 -10.36590 -10.17653 -10.06588 -9.94973 -9.92982 -9.46257 -9.20505 -8.70433 -8.42981 -8.09013 -6.07896 -4.11780 0.47159 0.64937 2.91127 3.17927 3.27543 3.33353 3.36104 3.42093 3.54972 3.87498 4.03352 4.19270 4.27017 4.29574 4.37505 4.40856 4.55029 4.57563 4.63107 4.68429 4.89340 4.99084 5.03637 5.06564 5.14850 5.26367 5.28522 5.36756 5.41046 5.50439 5.51654 5.54826 5.61655 5.64954 5.69770 5.71983 5.74118 5.82722 5.91827 5.92725 5.94579 6.09673 6.33101 6.59894 6.70989 6.73163 6.85757 7.39492 7.58777 7.74822 7.90674 8.26588 8.44384 8.53916 8.94651 9.52811 11.03416 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.003246 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.444938 B = 8623.049847 C = 9707.514722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.127 3.873 11 N -0.611 5.611 12 C 0.073 3.927 13 C 0.106 3.894 14 C -0.148 4.148 15 C 0.509 3.491 16 O -0.531 6.531 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.114 4.114 20 C 0.045 3.955 21 N -0.509 5.509 22 C 0.078 3.922 23 C -0.073 4.073 24 C -0.102 4.102 25 C 0.040 3.960 26 N -0.249 5.249 27 N -0.243 5.243 28 C 0.047 3.953 29 H 0.262 0.738 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.152 0.848 49 H 0.172 0.828 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -23.197 -5.146 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.007 3.993 11 N -0.344 5.344 12 C -0.052 4.052 13 C 0.015 3.985 14 C -0.189 4.189 15 C 0.295 3.705 16 O -0.407 6.407 17 C -0.136 4.136 18 C -0.162 4.162 19 C -0.152 4.152 20 C -0.083 4.083 21 N -0.233 5.233 22 C -0.049 4.049 23 C -0.085 4.085 24 C -0.132 4.132 25 C -0.124 4.124 26 N -0.091 5.091 27 N -0.083 5.083 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.170 0.830 49 H 0.189 0.811 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.867 -23.415 -5.317 24.182 hybrid contribution -0.738 2.051 0.559 2.250 sum 2.129 -21.365 -4.758 21.991 Atomic orbital electron populations 1.69966 1.06114 1.26772 1.50227 1.24993 0.94853 0.99334 0.95012 0.86554 0.79893 0.83230 0.78108 1.20599 1.21129 1.19761 1.21067 0.93008 0.90677 1.51513 0.92521 1.19385 0.94361 0.91009 0.97703 1.21820 0.95094 0.81126 1.01237 1.48657 1.56275 1.23534 1.05939 1.22746 1.01353 0.92286 0.88793 1.21380 0.91906 0.89767 0.95426 1.22489 1.02923 0.97836 0.95637 1.20778 0.79116 0.85721 0.84837 1.90732 1.57111 1.71848 1.21035 1.21451 0.95230 1.02167 0.94716 1.21650 0.98074 1.00197 0.96288 1.21560 0.94618 0.99625 0.99401 1.22318 0.98476 1.00077 0.87400 1.62063 1.04235 1.47825 1.09161 1.21327 0.86530 0.97509 0.99537 1.21031 0.96875 0.95531 0.95078 1.22349 0.97113 0.94077 0.99654 1.24344 0.92186 1.00656 0.95199 1.72995 1.25582 1.05549 1.04980 1.73063 1.14259 1.00914 1.20095 1.24326 0.91608 1.00456 0.95370 0.92884 0.96539 0.96057 0.91054 0.91848 0.90642 0.90224 0.87252 0.87571 0.90404 0.90338 0.91621 0.91282 0.91051 0.91388 0.90742 0.93806 0.91100 0.88644 0.83035 0.81098 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 10 C 0.13 2.55 5.87 -4.04 -0.02 2.52 16 11 N -0.61 -10.01 1.78 -172.61 -0.31 -10.32 16 12 C 0.07 0.90 4.74 -3.38 -0.02 0.89 16 13 C 0.11 1.02 0.71 -131.56 -0.09 0.93 16 14 C -0.15 -1.71 5.47 -27.02 -0.15 -1.85 16 15 C 0.51 8.57 6.49 -10.75 -0.07 8.50 16 16 O -0.53 -11.41 17.60 5.55 0.10 -11.31 16 17 C -0.10 -0.76 4.66 -26.99 -0.13 -0.88 16 18 C -0.12 -0.88 5.81 -26.53 -0.15 -1.03 16 19 C -0.11 -0.81 6.07 -26.65 -0.16 -0.97 16 20 C 0.04 0.37 4.34 -3.74 -0.02 0.35 16 21 N -0.51 -4.53 4.61 -220.33 -1.01 -5.54 16 22 C 0.08 0.78 4.00 -4.98 -0.02 0.76 16 23 C -0.07 -0.69 4.14 -104.25 -0.43 -1.13 16 24 C -0.10 -0.83 9.93 -39.20 -0.39 -1.22 16 25 C 0.04 0.34 11.31 -17.37 -0.20 0.15 16 26 N -0.25 -2.97 11.50 30.55 0.35 -2.62 16 27 N -0.24 -3.04 11.50 30.55 0.35 -2.69 16 28 C 0.05 0.49 9.20 -17.37 -0.16 0.33 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.52 7.93 -51.93 -0.41 1.11 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 0.86 5.83 -51.93 -0.30 0.56 16 35 H 0.08 1.02 7.78 -51.93 -0.40 0.61 16 36 H 0.11 1.15 7.86 -51.93 -0.41 0.74 16 37 H 0.11 1.10 7.30 -51.93 -0.38 0.72 16 38 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.50 7.58 -51.93 -0.39 0.11 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.65 5.75 -51.93 -0.30 0.36 16 45 H 0.04 0.38 6.19 -51.93 -0.32 0.06 16 46 H 0.07 0.84 5.65 -51.93 -0.29 0.55 16 47 H 0.10 1.01 6.57 -51.93 -0.34 0.67 16 48 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -34.22 387.47 -9.27 -43.49 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.74 Total: -1.67 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.56 Total: -5.76 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.12 Total: -47.09 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.10 Total: -11.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.22 -9.27 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273271549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.888 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds