Wall clock time and date at job start Wed Apr 1 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46965 * 269.99570 * 3 2 1 5 5 H 1.48502 * 109.47305 * 29.99536 * 3 2 1 6 6 H 1.48499 * 109.47111 * 149.99500 * 3 2 1 7 7 C 1.37875 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00454 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47414 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.46914 * 124.34950 * 89.99843 * 11 10 9 13 13 C 1.53837 * 105.34445 * 163.57034 * 12 11 10 14 14 C 1.53965 * 102.46268 * 24.71611 * 13 12 11 15 15 C 1.34491 * 124.35128 * 269.99885 * 11 10 9 16 16 O 1.21285 * 124.94864 * 0.38092 * 15 11 10 17 17 C 1.52234 * 110.58672 * 142.56215 * 13 12 11 18 18 C 1.53262 * 109.35528 * 66.38233 * 17 13 12 19 19 C 1.53122 * 109.06137 * 56.44020 * 18 17 13 20 20 C 1.53035 * 109.41910 * 301.74242 * 19 18 17 21 21 N 1.45972 * 110.75030 * 266.61287 * 13 12 11 22 22 C 1.46897 * 110.99980 * 60.36338 * 21 13 12 23 23 C 1.50698 * 109.47375 * 190.00434 * 22 21 13 24 24 C 1.38928 * 121.01145 * 269.71689 * 23 22 21 25 25 C 1.38571 * 117.97142 * 179.78137 * 24 23 22 26 26 N 1.31967 * 119.84586 * 0.50409 * 25 24 23 27 27 N 1.28341 * 122.18036 * 359.73419 * 26 25 24 28 28 C 1.31966 * 122.18139 * 0.02562 * 27 26 25 29 29 H 0.97001 * 120.00344 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47287 * 59.99707 * 9 7 2 31 31 H 1.09003 * 109.46636 * 299.99834 * 9 7 2 32 32 H 1.08997 * 109.47086 * 59.99641 * 10 9 7 33 33 H 1.08999 * 109.46631 * 300.00145 * 10 9 7 34 34 H 1.08998 * 110.26892 * 44.60370 * 12 11 10 35 35 H 1.08994 * 110.27175 * 282.53875 * 12 11 10 36 36 H 1.08997 * 110.51192 * 94.51920 * 14 13 12 37 37 H 1.08997 * 110.51143 * 217.22999 * 14 13 12 38 38 H 1.09000 * 109.49460 * 306.41613 * 17 13 12 39 39 H 1.08998 * 109.51408 * 186.35646 * 17 13 12 40 40 H 1.08998 * 109.53574 * 296.56525 * 18 17 13 41 41 H 1.09003 * 109.60937 * 176.35478 * 18 17 13 42 42 H 1.09002 * 109.48215 * 61.73140 * 19 18 17 43 43 H 1.08999 * 109.48244 * 181.75896 * 19 18 17 44 44 H 1.08997 * 109.46924 * 179.76410 * 20 19 18 45 45 H 1.08998 * 109.47193 * 299.76446 * 20 19 18 46 46 H 1.09004 * 109.47436 * 310.00161 * 22 21 13 47 47 H 1.09003 * 109.47370 * 69.99917 * 22 21 13 48 48 H 1.07997 * 121.01258 * 0.02562 * 24 23 22 49 49 H 1.07997 * 120.07344 * 180.21477 * 25 24 23 50 50 H 1.08006 * 120.07874 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 1.0978 -5.6491 -1.2114 13 6 0.7591 -7.0751 -0.7441 14 6 0.4079 -6.8637 0.7400 15 6 1.1337 -5.5878 1.1118 16 8 1.3427 -5.2129 2.2462 17 6 -0.4425 -7.6167 -1.5058 18 6 -0.0696 -7.7965 -2.9815 19 6 1.1527 -8.7135 -3.0802 20 6 2.3117 -8.1034 -2.2888 21 7 1.9174 -7.9529 -0.8806 22 6 3.0420 -7.4707 -0.0678 23 6 4.2845 -8.2483 -0.4177 24 6 4.6134 -9.4152 0.2608 25 6 5.7680 -10.0825 -0.1157 26 7 6.5202 -9.5976 -1.0856 27 7 6.2189 -8.5170 -1.7090 28 6 5.1370 -7.8181 -1.4217 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6044 0.8905 33 1 2.8719 -3.6043 -0.8895 34 1 1.9133 -5.6723 -1.9342 35 1 0.2184 -5.1760 -1.6483 36 1 -0.6680 -6.7411 0.8641 37 1 0.7700 -7.6980 1.3407 38 1 -1.2722 -6.9146 -1.4234 39 1 -0.7369 -8.5783 -1.0854 40 1 0.1662 -6.8263 -3.4187 41 1 -0.9058 -8.2447 -3.5182 42 1 0.9069 -9.6925 -2.6686 43 1 1.4430 -8.8211 -4.1253 44 1 3.1810 -8.7576 -2.3551 45 1 2.5600 -7.1263 -2.7031 46 1 3.2075 -6.4121 -0.2681 47 1 2.8123 -7.6089 0.9888 48 1 3.9861 -9.7928 1.0547 49 1 6.0540 -10.9948 0.3865 50 1 4.9160 -6.9133 -1.9686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273271549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:06 Heat of formation + Delta-G solvation = 9.709254 kcal Electronic energy + Delta-G solvation = -31588.710711 eV Core-core repulsion = 27615.315096 eV Total energy + Delta-G solvation = -3973.395615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74826 -41.84335 -39.57941 -37.06058 -36.07482 -35.55247 -34.01908 -33.65015 -32.84922 -31.42410 -29.24544 -28.58475 -27.42452 -26.12697 -25.64354 -24.89144 -23.43154 -22.96023 -22.35235 -20.77470 -19.45100 -18.71899 -18.56250 -18.08705 -17.74687 -17.32941 -17.07577 -16.63363 -16.36915 -16.17536 -15.73637 -15.58455 -15.47961 -15.14135 -14.99806 -14.56012 -14.45639 -14.29546 -14.17729 -13.94783 -13.74331 -13.61039 -13.30226 -13.26358 -12.97393 -12.89404 -12.75071 -12.62480 -12.25873 -12.00403 -11.89955 -11.86270 -11.59936 -11.45637 -11.43288 -11.36222 -11.09006 -10.95151 -10.70956 -10.67430 -10.61803 -9.77537 -9.31623 -8.26815 -6.39541 -0.26460 -0.05013 1.36783 1.38826 1.49575 1.57055 2.06368 2.38459 2.42238 2.77810 3.06911 3.16235 3.22526 3.32367 3.43469 3.51268 3.67442 3.73536 3.80988 3.91667 3.99537 4.20646 4.25321 4.27467 4.31629 4.36741 4.44567 4.47620 4.51286 4.62848 4.63128 4.67350 4.76402 4.80551 4.83866 4.85176 4.90968 5.01918 5.07145 5.13104 5.23659 5.26593 5.28304 5.32467 5.41113 5.51356 5.53639 5.76698 5.85519 5.97973 6.11450 6.23836 6.75644 7.16486 7.30539 7.68467 8.85131 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.003246 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.444938 B = 8623.049847 C = 9707.514722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.026 3.974 10 C 0.143 3.857 11 N -0.613 5.613 12 C 0.069 3.931 13 C 0.121 3.879 14 C -0.135 4.135 15 C 0.498 3.502 16 O -0.586 6.586 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.109 4.109 20 C 0.045 3.955 21 N -0.497 5.497 22 C 0.085 3.915 23 C -0.078 4.078 24 C -0.093 4.093 25 C 0.045 3.955 26 N -0.282 5.282 27 N -0.276 5.276 28 C 0.044 3.956 29 H 0.265 0.735 30 H 0.000 1.000 31 H -0.025 1.025 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.180 0.820 49 H 0.207 0.793 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -25.055 -5.900 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.012 4.012 10 C 0.022 3.978 11 N -0.345 5.345 12 C -0.055 4.055 13 C 0.030 3.970 14 C -0.175 4.175 15 C 0.287 3.713 16 O -0.467 6.467 17 C -0.132 4.132 18 C -0.160 4.160 19 C -0.147 4.147 20 C -0.082 4.082 21 N -0.221 5.221 22 C -0.043 4.043 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.119 4.119 26 N -0.123 5.123 27 N -0.116 5.116 28 C -0.122 4.122 29 H 0.073 0.927 30 H 0.018 0.982 31 H -0.006 1.006 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.198 0.802 49 H 0.224 0.776 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.838 -25.311 -6.124 26.195 hybrid contribution -0.751 2.596 0.820 2.824 sum 2.087 -22.715 -5.305 23.419 Atomic orbital electron populations 1.70100 1.07888 1.27932 1.51112 1.25975 0.95764 1.03452 0.94370 0.85412 0.78539 0.78147 0.78752 1.19154 1.20860 1.18899 1.21529 0.93658 0.91890 1.51354 0.91751 1.19183 0.94507 0.93011 0.94532 1.21327 0.93867 0.81285 1.01364 1.48667 1.55680 1.22346 1.07787 1.23027 1.01537 0.93522 0.87381 1.21367 0.93123 0.88255 0.94294 1.22499 1.02992 0.95058 0.96971 1.21747 0.78438 0.87164 0.83918 1.90691 1.59229 1.73578 1.23201 1.21478 0.93946 1.02861 0.94952 1.21648 0.98636 0.99967 0.95761 1.21544 0.93882 0.99619 0.99663 1.22348 0.99072 0.99885 0.86857 1.62124 1.03606 1.46728 1.09632 1.21188 0.87213 0.96400 0.99454 1.20995 0.96521 0.96184 0.95281 1.22690 0.96997 0.93083 0.99459 1.24886 0.91610 1.01377 0.94031 1.72898 1.27029 1.05905 1.06475 1.72989 1.15361 1.01814 1.21403 1.24412 0.91467 1.00530 0.95815 0.92655 0.98207 1.00635 0.92785 0.89746 0.89536 0.90580 0.85676 0.85698 0.90196 0.88678 0.92412 0.89745 0.90501 0.90554 0.91075 0.94300 0.93275 0.89051 0.80226 0.77644 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.37 5.30 29.85 0.16 1.53 16 10 C 0.14 5.95 5.87 86.38 0.51 6.46 16 11 N -0.61 -20.53 1.78 -818.57 -1.46 -21.99 16 12 C 0.07 1.66 4.74 86.58 0.41 2.07 16 13 C 0.12 2.10 0.71 4.06 0.00 2.10 16 14 C -0.14 -2.90 5.47 30.41 0.17 -2.73 16 15 C 0.50 17.07 6.49 87.94 0.57 17.64 16 16 O -0.59 -26.27 17.60 -3.05 -0.05 -26.32 16 17 C -0.09 -1.18 4.66 30.43 0.14 -1.04 16 18 C -0.12 -1.37 5.81 30.72 0.18 -1.19 16 19 C -0.11 -1.22 6.07 30.65 0.19 -1.03 16 20 C 0.05 0.65 4.34 86.29 0.37 1.03 16 21 N -0.50 -7.77 4.61 -850.99 -3.92 -11.69 16 22 C 0.09 1.61 4.00 85.56 0.34 1.95 16 23 C -0.08 -1.38 4.14 -19.62 -0.08 -1.46 16 24 C -0.09 -1.28 9.93 22.51 0.22 -1.06 16 25 C 0.05 0.68 11.31 84.75 0.96 1.64 16 26 N -0.28 -6.50 11.50 -57.27 -0.66 -7.16 16 27 N -0.28 -6.88 11.50 -57.26 -0.66 -7.54 16 28 C 0.04 0.89 9.20 84.75 0.78 1.67 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 32 H 0.05 2.42 7.93 -2.39 -0.02 2.40 16 33 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.09 1.89 5.83 -2.39 -0.01 1.88 16 35 H 0.08 1.91 7.78 -2.39 -0.02 1.89 16 36 H 0.13 2.36 7.86 -2.39 -0.02 2.35 16 37 H 0.12 2.27 7.30 -2.39 -0.02 2.25 16 38 H 0.08 1.02 8.05 -2.39 -0.02 1.00 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 1.12 5.75 -2.39 -0.01 1.11 16 45 H 0.04 0.61 6.19 -2.39 -0.01 0.60 16 46 H 0.05 1.16 5.65 -2.38 -0.01 1.14 16 47 H 0.09 1.82 6.57 -2.39 -0.02 1.80 16 48 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 49 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -78.14 387.47 2.12 -76.02 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.94 Total: 11.70 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.62 Total: -2.74 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -6.41 Total: -105.08 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -78.14 2.12 -76.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273271549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.731 kcal (2) G-P(sol) polarization free energy of solvation -78.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds