Wall clock time and date at job start Wed Apr 1 2020 02:56:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 120.00006 * 2 1
4 4 H 1.48498 * 109.46894 * 270.00111 * 3 2 1
5 5 H 1.48500 * 109.47248 * 29.99774 * 3 2 1
6 6 H 1.48495 * 109.46991 * 150.00145 * 3 2 1
7 7 C 1.37875 * 119.99716 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00681 * 359.97438 * 7 2 1
9 9 C 1.50708 * 119.99581 * 180.02562 * 7 2 1
10 10 C 1.52999 * 109.46922 * 180.02562 * 9 7 2
11 11 N 1.46500 * 109.47236 * 180.02562 * 10 9 7
12 12 C 1.46921 * 124.34631 * 270.04431 * 11 10 9
13 13 C 1.53812 * 105.35012 * 196.39606 * 12 11 10
14 14 C 1.53990 * 102.46431 * 335.29549 * 13 12 11
15 15 C 1.34495 * 124.35562 * 90.01946 * 11 10 9
16 16 O 1.21285 * 124.93999 * 359.67268 * 15 11 10
17 17 C 1.52235 * 110.64598 * 217.48076 * 13 12 11
18 18 C 1.53256 * 109.35947 * 178.97714 * 17 13 12
19 19 C 1.53125 * 109.06251 * 56.44024 * 18 17 13
20 20 C 1.53048 * 109.40661 * 301.74994 * 19 18 17
21 21 N 1.45974 * 110.79853 * 93.35714 * 13 12 11
22 22 C 1.46901 * 111.00177 * 307.59488 * 21 13 12
23 23 C 1.50704 * 109.47240 * 170.03982 * 22 21 13
24 24 C 1.38918 * 121.01432 * 275.45464 * 23 22 21
25 25 C 1.38565 * 117.97253 * 180.02562 * 24 23 22
26 26 N 1.31959 * 119.84725 * 359.97438 * 25 24 23
27 27 N 1.28355 * 122.17987 * 359.73973 * 26 25 24
28 28 C 1.31962 * 122.17580 * 0.54160 * 27 26 25
29 29 H 0.97002 * 119.99991 * 0.02562 * 1 2 3
30 30 H 1.08995 * 109.47136 * 60.00049 * 9 7 2
31 31 H 1.09001 * 109.46667 * 299.99238 * 9 7 2
32 32 H 1.08999 * 109.47502 * 59.99454 * 10 9 7
33 33 H 1.09004 * 109.47155 * 299.99549 * 10 9 7
34 34 H 1.09004 * 110.27025 * 77.43271 * 12 11 10
35 35 H 1.08998 * 110.27232 * 315.36538 * 12 11 10
36 36 H 1.08993 * 110.51424 * 142.76975 * 14 13 12
37 37 H 1.09000 * 110.50693 * 265.34285 * 14 13 12
38 38 H 1.09004 * 109.49113 * 59.01126 * 17 13 12
39 39 H 1.08998 * 109.49090 * 298.94344 * 17 13 12
40 40 H 1.09000 * 109.53862 * 296.56939 * 18 17 13
41 41 H 1.08994 * 109.61037 * 176.35532 * 18 17 13
42 42 H 1.08997 * 109.48521 * 181.77013 * 19 18 17
43 43 H 1.09001 * 109.48206 * 61.72651 * 19 18 17
44 44 H 1.08996 * 109.47107 * 299.76642 * 20 19 18
45 45 H 1.08994 * 109.47311 * 179.75800 * 20 19 18
46 46 H 1.09002 * 109.47047 * 50.04135 * 22 21 13
47 47 H 1.08999 * 109.47149 * 290.04188 * 22 21 13
48 48 H 1.08000 * 121.01873 * 359.97438 * 24 23 22
49 49 H 1.08007 * 120.07822 * 179.97438 * 25 24 23
50 50 H 1.08004 * 120.07328 * 179.74668 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5466 1.4401 0.7000
7 6 2.0044 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0014
9 6 3.5115 -1.1940 0.0011
10 6 4.0215 -2.6365 0.0010
11 7 5.4865 -2.6366 0.0022
12 6 6.3164 -2.6352 -1.2102
13 6 7.7206 -3.0545 -0.7429
14 6 7.7126 -2.6459 0.7418
15 6 6.2446 -2.6374 1.1131
16 8 5.8149 -2.6325 2.2473
17 6 8.7914 -2.2837 -1.5023
18 6 10.1755 -2.7049 -0.9966
19 6 10.3228 -4.2216 -1.1475
20 6 9.2115 -4.9211 -0.3613
21 7 7.9032 -4.4963 -0.8792
22 6 6.8134 -5.2295 -0.2214
23 6 6.8981 -6.6893 -0.5863
24 6 6.3324 -7.1673 -1.7616
25 6 6.4472 -8.5209 -2.0345
26 7 7.0799 -9.3104 -1.1873
27 7 7.6072 -8.8678 -0.1040
28 6 7.5427 -7.5955 0.2402
29 1 -0.4850 0.8401 -0.0004
30 1 3.8745 -0.6800 0.8911
31 1 3.8751 -0.6805 -0.8889
32 1 3.6585 -3.1502 -0.8892
33 1 3.6579 -3.1506 0.8908
34 1 6.3461 -1.6367 -1.6464
35 1 5.9293 -3.3527 -1.9336
36 1 8.2542 -3.3768 1.3420
37 1 8.1460 -1.6536 0.8671
38 1 8.6545 -1.2146 -1.3393
39 1 8.7111 -2.5028 -2.5670
40 1 10.2787 -2.4313 0.0534
41 1 10.9467 -2.2038 -1.5815
42 1 11.2930 -4.5329 -0.7606
43 1 10.2477 -4.4911 -2.2010
44 1 9.2890 -4.6545 0.6927
45 1 9.3128 -6.0007 -0.4714
46 1 5.8549 -4.8279 -0.5503
47 1 6.9019 -5.1195 0.8594
48 1 5.8182 -6.5043 -2.4416
49 1 6.0196 -8.9290 -2.9385
50 1 7.9951 -7.2606 1.1620
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001273271550.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:56:11
Heat of formation + Delta-G solvation = 33.825038 kcal
Electronic energy + Delta-G solvation = -31519.509205 eV
Core-core repulsion = 27547.159329 eV
Total energy + Delta-G solvation = -3972.349876 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.83008 -41.01557 -38.50994 -35.91851 -35.34376 -33.86813 -32.91093 -32.46302
-32.10728 -30.17890 -28.77461 -27.55419 -26.34192 -24.92963 -24.64849 -24.09750
-22.37979 -21.75423 -21.17465 -19.39492 -18.84322 -17.79853 -17.20873 -17.11558
-16.92356 -16.49356 -15.92446 -15.55575 -15.18698 -15.02653 -14.82576 -14.63628
-14.51407 -14.12783 -13.82608 -13.64577 -13.57249 -13.28090 -13.04425 -12.94614
-12.69686 -12.57404 -12.53516 -12.20420 -11.87117 -11.73575 -11.66017 -11.13314
-11.09636 -10.93976 -10.86782 -10.79990 -10.57602 -10.33504 -10.17296 -10.07485
-9.97240 -9.93813 -9.58001 -9.31521 -8.73825 -8.62117 -8.33616 -6.12669
-4.12201 0.50077 0.67156 2.76627 3.14182 3.23958 3.26666 3.32997
3.37538 3.53391 3.88614 4.01412 4.17192 4.19620 4.28525 4.38241
4.39571 4.45374 4.53588 4.58865 4.63251 4.79652 4.92169 4.96680
5.01099 5.11384 5.17242 5.21540 5.30156 5.35024 5.38259 5.42949
5.50354 5.54901 5.57816 5.60395 5.64470 5.71596 5.74573 5.82315
5.84123 5.94928 6.01533 6.17550 6.47953 6.52829 6.65282 6.69775
7.05367 7.24181 7.47559 7.67636 8.37652 8.42933 8.45487 8.89849
9.49023 11.00357
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.011756 B = 0.003372 C = 0.002863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2381.111636 B = 8302.235714 C = 9776.028086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.071 3.929
3 Si 0.880 3.120
4 H -0.277 1.277
5 H -0.286 1.286
6 H -0.266 1.266
7 C -0.523 4.523
8 H 0.074 0.926
9 C -0.023 4.023
10 C 0.136 3.864
11 N -0.616 5.616
12 C 0.108 3.892
13 C 0.107 3.893
14 C -0.188 4.188
15 C 0.510 3.490
16 O -0.529 6.529
17 C -0.098 4.098
18 C -0.122 4.122
19 C -0.115 4.115
20 C 0.047 3.953
21 N -0.511 5.511
22 C 0.081 3.919
23 C -0.070 4.070
24 C -0.097 4.097
25 C 0.041 3.959
26 N -0.249 5.249
27 N -0.245 5.245
28 C 0.044 3.956
29 H 0.264 0.736
30 H 0.020 0.980
31 H 0.013 0.987
32 H 0.072 0.928
33 H 0.077 0.923
34 H 0.081 0.919
35 H 0.089 0.911
36 H 0.098 0.902
37 H 0.108 0.892
38 H 0.076 0.924
39 H 0.079 0.921
40 H 0.063 0.937
41 H 0.068 0.932
42 H 0.067 0.933
43 H 0.072 0.928
44 H 0.043 0.957
45 H 0.075 0.925
46 H 0.107 0.893
47 H 0.055 0.945
48 H 0.152 0.848
49 H 0.172 0.828
50 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.468 -9.935 -6.753 25.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.131 4.131
3 Si 0.707 3.293
4 H -0.203 1.203
5 H -0.212 1.212
6 H -0.191 1.191
7 C -0.561 4.561
8 H 0.092 0.908
9 C -0.062 4.062
10 C 0.016 3.984
11 N -0.350 5.350
12 C -0.016 4.016
13 C 0.016 3.984
14 C -0.230 4.230
15 C 0.297 3.703
16 O -0.406 6.406
17 C -0.137 4.137
18 C -0.160 4.160
19 C -0.152 4.152
20 C -0.080 4.080
21 N -0.234 5.234
22 C -0.047 4.047
23 C -0.082 4.082
24 C -0.126 4.126
25 C -0.123 4.123
26 N -0.091 5.091
27 N -0.086 5.086
28 C -0.121 4.121
29 H 0.074 0.926
30 H 0.038 0.962
31 H 0.031 0.969
32 H 0.091 0.909
33 H 0.095 0.905
34 H 0.099 0.901
35 H 0.107 0.893
36 H 0.116 0.884
37 H 0.126 0.874
38 H 0.095 0.905
39 H 0.098 0.902
40 H 0.081 0.919
41 H 0.087 0.913
42 H 0.086 0.914
43 H 0.090 0.910
44 H 0.061 0.939
45 H 0.094 0.906
46 H 0.125 0.875
47 H 0.074 0.926
48 H 0.170 0.830
49 H 0.190 0.810
50 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 22.483 -11.488 -6.275 26.016
hybrid contribution -0.265 2.726 0.452 2.776
sum 22.218 -8.762 -5.823 24.583
Atomic orbital electron populations
1.69900 1.06265 1.27042 1.50577 1.24971 0.94709 0.99130 0.94308
0.86777 0.80466 0.83646 0.78416 1.20252 1.21238 1.19115 1.20940
0.88843 0.94708 1.51639 0.90823 1.19881 0.97383 0.92163 0.96744
1.21615 0.74137 1.00400 1.02206 1.48736 1.07699 1.72447 1.06138
1.22132 0.88470 1.02535 0.88455 1.21386 0.95891 0.87748 0.93358
1.23080 0.96239 1.05135 0.98530 1.20719 0.88608 0.76107 0.84881
1.90740 1.78426 1.50310 1.21108 1.21444 0.92794 0.98959 1.00460
1.21623 0.96854 0.95906 1.01574 1.21561 0.97298 0.95122 1.01264
1.22258 0.88408 1.00118 0.97265 1.61867 1.01771 1.03169 1.56631
1.21260 0.97116 0.88311 0.97978 1.20976 0.95470 0.97098 0.94637
1.22341 0.97148 0.96668 0.96469 1.24354 0.96105 0.91687 1.00142
1.72983 1.05648 1.31847 0.98656 1.73037 1.12694 1.13536 1.09312
1.24259 0.96436 0.91023 1.00338 0.92587 0.96162 0.96901 0.90933
0.90488 0.90066 0.89324 0.88411 0.87386 0.90525 0.90230 0.91855
0.91329 0.91396 0.90960 0.93929 0.90618 0.87522 0.92635 0.82979
0.81039 0.81682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16
2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16
3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16
4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16
7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16
8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16
9 C -0.02 -0.54 4.37 -27.88 -0.12 -0.67 16
10 C 0.14 2.54 5.87 -4.04 -0.02 2.52 16
11 N -0.62 -9.28 1.82 -172.62 -0.31 -9.59 16
12 C 0.11 1.17 5.68 -3.39 -0.02 1.15 16
13 C 0.11 0.94 0.72 -131.55 -0.09 0.84 16
14 C -0.19 -2.03 4.47 -27.01 -0.12 -2.15 16
15 C 0.51 8.13 6.52 -10.76 -0.07 8.06 16
16 O -0.53 -11.00 17.60 5.55 0.10 -10.90 16
17 C -0.10 -0.67 4.66 -26.99 -0.13 -0.80 16
18 C -0.12 -0.73 5.81 -26.53 -0.15 -0.88 16
19 C -0.11 -0.71 6.07 -26.64 -0.16 -0.87 16
20 C 0.05 0.34 4.99 -3.75 -0.02 0.32 16
21 N -0.51 -4.20 4.46 -220.34 -0.98 -5.18 16
22 C 0.08 0.77 3.72 -4.97 -0.02 0.75 16
23 C -0.07 -0.65 4.73 -104.25 -0.49 -1.14 16
24 C -0.10 -0.81 9.95 -39.21 -0.39 -1.20 16
25 C 0.04 0.36 11.31 -17.38 -0.20 0.17 16
26 N -0.25 -2.98 11.50 30.55 0.35 -2.63 16
27 N -0.24 -3.00 11.51 30.55 0.35 -2.65 16
28 C 0.04 0.44 9.64 -17.38 -0.17 0.27 16
29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
30 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16
31 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16
32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
33 H 0.08 1.57 7.93 -51.93 -0.41 1.16 16
34 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16
35 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16
36 H 0.10 0.98 5.72 -51.93 -0.30 0.69 16
37 H 0.11 1.08 7.80 -51.93 -0.40 0.67 16
38 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16
39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.06 0.39 7.57 -51.93 -0.39 0.00 16
41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
44 H 0.04 0.32 6.19 -51.93 -0.32 0.00 16
45 H 0.08 0.58 6.17 -51.93 -0.32 0.26 16
46 H 0.11 1.14 5.48 -51.93 -0.28 0.86 16
47 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16
48 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16
49 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16
50 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16
LS Contribution 385.53 15.07 5.81 5.81
Total: -1.00 -34.57 385.53 -8.92 -43.48
By element:
Atomic # 1 Polarization: 5.59 SS G_CDS: -7.73 Total: -2.14 kcal
Atomic # 6 Polarization: -3.94 SS G_CDS: -2.61 Total: -6.54 kcal
Atomic # 7 Polarization: -46.81 SS G_CDS: 0.18 Total: -46.63 kcal
Atomic # 8 Polarization: -11.00 SS G_CDS: 0.10 Total: -10.90 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -34.57 -8.92 -43.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273271550.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.309 kcal
(2) G-P(sol) polarization free energy of solvation -34.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds