Wall clock time and date at job start Wed Apr 1 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48498 * 109.46894 * 270.00111 * 3 2 1 5 5 H 1.48500 * 109.47248 * 29.99774 * 3 2 1 6 6 H 1.48495 * 109.46991 * 150.00145 * 3 2 1 7 7 C 1.37875 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00681 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99581 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46922 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47236 * 180.02562 * 10 9 7 12 12 C 1.46921 * 124.34631 * 270.04431 * 11 10 9 13 13 C 1.53812 * 105.35012 * 196.39606 * 12 11 10 14 14 C 1.53990 * 102.46431 * 335.29549 * 13 12 11 15 15 C 1.34495 * 124.35562 * 90.01946 * 11 10 9 16 16 O 1.21285 * 124.93999 * 359.67268 * 15 11 10 17 17 C 1.52235 * 110.64598 * 217.48076 * 13 12 11 18 18 C 1.53256 * 109.35947 * 178.97714 * 17 13 12 19 19 C 1.53125 * 109.06251 * 56.44024 * 18 17 13 20 20 C 1.53048 * 109.40661 * 301.74994 * 19 18 17 21 21 N 1.45974 * 110.79853 * 93.35714 * 13 12 11 22 22 C 1.46901 * 111.00177 * 307.59488 * 21 13 12 23 23 C 1.50704 * 109.47240 * 170.03982 * 22 21 13 24 24 C 1.38918 * 121.01432 * 275.45464 * 23 22 21 25 25 C 1.38565 * 117.97253 * 180.02562 * 24 23 22 26 26 N 1.31959 * 119.84725 * 359.97438 * 25 24 23 27 27 N 1.28355 * 122.17987 * 359.73973 * 26 25 24 28 28 C 1.31962 * 122.17580 * 0.54160 * 27 26 25 29 29 H 0.97002 * 119.99991 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 60.00049 * 9 7 2 31 31 H 1.09001 * 109.46667 * 299.99238 * 9 7 2 32 32 H 1.08999 * 109.47502 * 59.99454 * 10 9 7 33 33 H 1.09004 * 109.47155 * 299.99549 * 10 9 7 34 34 H 1.09004 * 110.27025 * 77.43271 * 12 11 10 35 35 H 1.08998 * 110.27232 * 315.36538 * 12 11 10 36 36 H 1.08993 * 110.51424 * 142.76975 * 14 13 12 37 37 H 1.09000 * 110.50693 * 265.34285 * 14 13 12 38 38 H 1.09004 * 109.49113 * 59.01126 * 17 13 12 39 39 H 1.08998 * 109.49090 * 298.94344 * 17 13 12 40 40 H 1.09000 * 109.53862 * 296.56939 * 18 17 13 41 41 H 1.08994 * 109.61037 * 176.35532 * 18 17 13 42 42 H 1.08997 * 109.48521 * 181.77013 * 19 18 17 43 43 H 1.09001 * 109.48206 * 61.72651 * 19 18 17 44 44 H 1.08996 * 109.47107 * 299.76642 * 20 19 18 45 45 H 1.08994 * 109.47311 * 179.75800 * 20 19 18 46 46 H 1.09002 * 109.47047 * 50.04135 * 22 21 13 47 47 H 1.08999 * 109.47149 * 290.04188 * 22 21 13 48 48 H 1.08000 * 121.01873 * 359.97438 * 24 23 22 49 49 H 1.08007 * 120.07822 * 179.97438 * 25 24 23 50 50 H 1.08004 * 120.07328 * 179.74668 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6366 0.0022 12 6 6.3164 -2.6352 -1.2102 13 6 7.7206 -3.0545 -0.7429 14 6 7.7126 -2.6459 0.7418 15 6 6.2446 -2.6374 1.1131 16 8 5.8149 -2.6325 2.2473 17 6 8.7914 -2.2837 -1.5023 18 6 10.1755 -2.7049 -0.9966 19 6 10.3228 -4.2216 -1.1475 20 6 9.2115 -4.9211 -0.3613 21 7 7.9032 -4.4963 -0.8792 22 6 6.8134 -5.2295 -0.2214 23 6 6.8981 -6.6893 -0.5863 24 6 6.3324 -7.1673 -1.7616 25 6 6.4472 -8.5209 -2.0345 26 7 7.0799 -9.3104 -1.1873 27 7 7.6072 -8.8678 -0.1040 28 6 7.5427 -7.5955 0.2402 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8751 -0.6805 -0.8889 32 1 3.6585 -3.1502 -0.8892 33 1 3.6579 -3.1506 0.8908 34 1 6.3461 -1.6367 -1.6464 35 1 5.9293 -3.3527 -1.9336 36 1 8.2542 -3.3768 1.3420 37 1 8.1460 -1.6536 0.8671 38 1 8.6545 -1.2146 -1.3393 39 1 8.7111 -2.5028 -2.5670 40 1 10.2787 -2.4313 0.0534 41 1 10.9467 -2.2038 -1.5815 42 1 11.2930 -4.5329 -0.7606 43 1 10.2477 -4.4911 -2.2010 44 1 9.2890 -4.6545 0.6927 45 1 9.3128 -6.0007 -0.4714 46 1 5.8549 -4.8279 -0.5503 47 1 6.9019 -5.1195 0.8594 48 1 5.8182 -6.5043 -2.4416 49 1 6.0196 -8.9290 -2.9385 50 1 7.9951 -7.2606 1.1620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273271550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:10 Heat of formation + Delta-G solvation = 10.508280 kcal Electronic energy + Delta-G solvation = -31520.520295 eV Core-core repulsion = 27547.159329 eV Total energy + Delta-G solvation = -3973.360966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.68903 -41.83036 -39.55534 -37.21034 -36.03540 -35.50498 -33.90364 -33.62471 -32.94617 -31.57365 -29.78109 -28.31686 -27.52240 -26.05107 -25.61954 -24.79396 -23.08896 -22.97374 -22.41147 -20.49905 -19.74988 -19.01140 -18.55497 -18.08358 -17.73910 -17.38067 -16.98531 -16.53170 -16.32923 -16.13823 -15.83518 -15.61899 -15.46170 -15.18295 -14.85487 -14.80017 -14.60742 -14.39594 -14.16655 -13.96641 -13.89193 -13.50023 -13.38458 -13.25538 -12.97456 -12.88488 -12.72617 -12.43158 -12.29099 -12.00234 -11.85936 -11.81427 -11.55161 -11.44703 -11.39140 -11.35348 -11.06892 -10.87083 -10.84768 -10.79955 -10.68946 -9.66899 -9.46585 -8.33940 -6.38838 -0.23788 -0.02993 1.29852 1.34637 1.45230 1.53124 2.04555 2.31641 2.43370 2.79701 3.01444 3.18061 3.24296 3.31813 3.47252 3.56443 3.68888 3.75061 3.83124 3.91549 4.02976 4.21975 4.23808 4.28785 4.33630 4.37104 4.44341 4.45952 4.50987 4.60191 4.62858 4.71104 4.71572 4.80161 4.84138 4.86372 4.92818 5.02948 5.08769 5.11288 5.14297 5.28152 5.28465 5.29284 5.34140 5.47839 5.53266 5.67877 5.87013 6.00324 6.18609 6.21549 6.68078 7.13709 7.26577 7.69447 8.82344 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.003372 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.111636 B = 8302.235714 C = 9776.028086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.254 1.254 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.532 4.532 8 H 0.040 0.960 9 C -0.014 4.014 10 C 0.149 3.851 11 N -0.614 5.614 12 C 0.101 3.899 13 C 0.120 3.880 14 C -0.175 4.175 15 C 0.499 3.501 16 O -0.589 6.589 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.110 4.110 20 C 0.046 3.954 21 N -0.503 5.503 22 C 0.089 3.911 23 C -0.074 4.074 24 C -0.092 4.092 25 C 0.044 3.956 26 N -0.283 5.283 27 N -0.277 5.277 28 C 0.042 3.958 29 H 0.267 0.733 30 H -0.002 1.002 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.039 0.961 48 H 0.176 0.824 49 H 0.204 0.796 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.276 -8.767 -9.016 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.179 1.179 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.058 0.942 9 C -0.052 4.052 10 C 0.027 3.973 11 N -0.347 5.347 12 C -0.021 4.021 13 C 0.029 3.971 14 C -0.217 4.217 15 C 0.288 3.712 16 O -0.469 6.469 17 C -0.133 4.133 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.081 4.081 21 N -0.226 5.226 22 C -0.039 4.039 23 C -0.085 4.085 24 C -0.121 4.121 25 C -0.121 4.121 26 N -0.124 5.124 27 N -0.117 5.117 28 C -0.123 4.123 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.194 0.806 49 H 0.221 0.779 50 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 25.338 -10.349 -8.582 28.683 hybrid contribution -1.213 2.284 1.152 2.831 sum 24.125 -8.064 -7.430 26.500 Atomic orbital electron populations 1.70046 1.08139 1.28240 1.52184 1.25924 0.95562 1.03298 0.93996 0.85687 0.78942 0.78602 0.79559 1.17874 1.21123 1.18582 1.21284 0.91376 0.93508 1.50875 0.94217 1.19737 0.94322 0.94993 0.96196 1.21169 0.76761 0.97430 1.01940 1.48711 1.06395 1.71666 1.07890 1.22471 0.88805 1.03897 0.86915 1.21402 0.95557 0.88208 0.91962 1.23091 0.92105 1.06393 1.00103 1.21632 0.90837 0.74639 0.84048 1.90702 1.79882 1.52883 1.23483 1.21473 0.92221 0.98975 1.00624 1.21622 0.96651 0.95637 1.01794 1.21546 0.97082 0.95230 1.00956 1.22308 0.88168 1.00115 0.97492 1.61930 1.01833 1.02727 1.56124 1.21101 0.97139 0.88637 0.97019 1.20989 0.95721 0.96762 0.95067 1.22642 0.96327 0.96870 0.96276 1.24845 0.95008 0.91785 1.00432 1.72888 1.06987 1.33170 0.99331 1.72961 1.14015 1.14610 1.10118 1.24443 0.96444 0.90602 1.00858 0.92359 0.98390 0.95113 0.88870 0.93235 0.88867 0.87696 0.87603 0.85828 0.89719 0.89202 0.91917 0.89923 0.90432 0.90999 0.94008 0.91058 0.88579 0.94290 0.80620 0.77947 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.95 44.23 27.47 68.60 1.88 46.11 16 4 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.89 6.54 99.48 0.65 -11.23 16 7 C -0.53 -30.19 9.66 25.60 0.25 -29.94 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.65 4.37 29.85 0.13 -0.52 16 10 C 0.15 5.55 5.87 86.38 0.51 6.06 16 11 N -0.61 -17.83 1.82 -818.59 -1.49 -19.32 16 12 C 0.10 1.88 5.68 86.57 0.49 2.38 16 13 C 0.12 1.73 0.72 4.06 0.00 1.73 16 14 C -0.18 -3.42 4.47 30.41 0.14 -3.28 16 15 C 0.50 15.72 6.52 87.93 0.57 16.29 16 16 O -0.59 -25.21 17.60 -3.05 -0.05 -25.26 16 17 C -0.09 -0.90 4.66 30.43 0.14 -0.76 16 18 C -0.12 -0.95 5.81 30.72 0.18 -0.77 16 19 C -0.11 -0.99 6.07 30.65 0.19 -0.80 16 20 C 0.05 0.56 4.99 86.30 0.43 0.99 16 21 N -0.50 -6.99 4.46 -851.02 -3.79 -10.79 16 22 C 0.09 1.58 3.72 85.56 0.32 1.90 16 23 C -0.07 -1.28 4.73 -19.62 -0.09 -1.38 16 24 C -0.09 -1.35 9.95 22.51 0.22 -1.13 16 25 C 0.04 0.70 11.31 84.75 0.96 1.66 16 26 N -0.28 -6.64 11.50 -57.27 -0.66 -7.29 16 27 N -0.28 -6.80 11.51 -57.27 -0.66 -7.46 16 28 C 0.04 0.82 9.64 84.75 0.82 1.64 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.00 -0.12 7.20 -2.39 -0.02 -0.13 16 31 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.05 2.11 7.93 -2.38 -0.02 2.09 16 34 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 35 H 0.10 1.66 7.42 -2.39 -0.02 1.65 16 36 H 0.11 1.94 5.72 -2.39 -0.01 1.92 16 37 H 0.12 2.09 7.80 -2.39 -0.02 2.07 16 38 H 0.08 0.74 8.06 -2.39 -0.02 0.72 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.54 7.57 -2.39 -0.02 0.52 16 41 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.04 0.53 6.19 -2.39 -0.01 0.52 16 45 H 0.07 0.97 6.17 -2.39 -0.01 0.96 16 46 H 0.10 1.93 5.48 -2.39 -0.01 1.92 16 47 H 0.04 0.83 6.70 -2.39 -0.02 0.81 16 48 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 50 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -78.68 385.53 2.13 -76.55 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.88 Total: 10.81 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.71 Total: -4.90 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -6.30 Total: -103.32 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -78.68 2.13 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273271550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.059 kcal (2) G-P(sol) polarization free energy of solvation -78.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds