Wall clock time and date at job start Wed Apr 1 2020 03:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38811 * 119.99459 * 2 1 4 4 C 1.38558 * 118.03764 * 179.71005 * 3 2 1 5 5 C 1.39479 * 117.90430 * 0.56365 * 4 3 2 6 6 N 1.39045 * 120.15829 * 179.71523 * 5 4 3 7 7 C 1.46799 * 111.00088 * 179.72640 * 6 5 4 8 8 C 1.53269 * 109.45151 * 170.80498 * 7 6 5 9 9 C 1.53216 * 108.62218 * 55.57120 * 8 7 6 10 10 C 1.52740 * 117.83830 * 163.01682 * 9 8 7 11 11 C 1.52766 * 117.78425 * 94.02147 * 9 8 7 12 12 H 1.09003 * 117.50371 * 0.34925 * 11 9 8 13 13 C 1.50700 * 117.50496 * 215.29057 * 11 9 8 14 14 O 1.21274 * 120.00170 * 266.09175 * 13 11 9 15 15 N 1.34784 * 119.99818 * 86.09435 * 13 11 9 16 16 C 1.46502 * 119.99724 * 179.97438 * 15 13 11 17 17 C 1.52994 * 109.46981 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47076 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99878 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99927 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47358 * 119.99846 * 22 20 18 25 25 H 1.48501 * 109.47191 * 239.99675 * 22 20 18 26 26 C 1.53216 * 114.75866 * 308.61421 * 9 8 7 27 27 C 1.46821 * 110.99688 * 55.01860 * 6 5 4 28 28 N 1.32485 * 119.68582 * 359.44809 * 5 4 3 29 29 N 1.28357 * 122.06963 * 0.27508 * 28 5 4 30 30 H 1.09004 * 109.47443 * 269.98014 * 1 2 3 31 31 H 1.09004 * 109.46902 * 29.97583 * 1 2 3 32 32 H 1.08995 * 109.47585 * 149.97789 * 1 2 3 33 33 H 1.08003 * 120.98180 * 0.02562 * 3 2 1 34 34 H 1.08005 * 121.04922 * 180.29190 * 4 3 2 35 35 H 1.09003 * 109.47311 * 50.81486 * 7 6 5 36 36 H 1.08999 * 109.48117 * 290.79983 * 7 6 5 37 37 H 1.08997 * 109.60968 * 295.83546 * 8 7 6 38 38 H 1.09003 * 109.75453 * 175.40069 * 8 7 6 39 39 H 1.08996 * 117.50496 * 144.78836 * 10 9 8 40 40 H 1.09010 * 117.50334 * 359.74153 * 10 9 8 41 41 H 0.96996 * 120.00029 * 359.97438 * 15 13 11 42 42 H 1.09000 * 109.46997 * 299.99953 * 16 15 13 43 43 H 1.09002 * 109.46717 * 59.99771 * 16 15 13 44 44 H 1.09000 * 109.47589 * 300.00047 * 17 16 15 45 45 H 1.09002 * 109.47210 * 60.00529 * 17 16 15 46 46 H 0.97001 * 120.00236 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.60790 * 171.12903 * 26 9 8 48 48 H 1.09003 * 109.60865 * 291.64630 * 26 9 8 49 49 H 1.09000 * 109.47687 * 309.19078 * 27 6 5 50 50 H 1.08995 * 109.47329 * 69.20154 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5857 1.1549 0.0062 5 6 4.1960 -0.0993 -0.0001 6 7 5.5827 -0.2013 -0.0003 7 6 6.0068 -1.6067 -0.0008 8 6 7.5201 -1.6831 -0.2319 9 6 8.2212 -0.8336 0.8331 10 6 9.7146 -1.0619 1.0582 11 6 8.7008 -1.5361 2.1021 12 1 8.5239 -2.6087 2.1811 13 6 8.6222 -0.7668 3.3955 14 8 9.5849 -0.1438 3.7900 15 7 7.4817 -0.7711 4.1139 16 6 7.4055 -0.0237 5.3716 17 6 6.0128 -0.1932 5.9820 18 6 5.9342 0.5761 7.2754 19 1 6.7915 1.1309 7.6267 20 6 4.7675 0.5717 8.0102 21 7 3.7233 -0.1034 7.5822 22 14 4.6698 1.5260 9.6131 23 1 5.9697 2.1964 9.8702 24 1 3.5961 2.5473 9.5165 25 1 4.3660 0.5924 10.7273 26 6 7.6879 0.5965 0.9666 27 6 6.1648 0.5380 1.1268 28 7 3.4482 -1.1929 -0.0005 29 7 2.1657 -1.1415 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6770 2.1466 0.0004 34 1 4.1740 2.0606 0.0112 35 1 5.4901 -2.1419 -0.7975 36 1 5.7626 -2.0605 0.9597 37 1 7.7587 -1.2972 -1.2230 38 1 7.8531 -2.7179 -0.1522 39 1 10.3246 -0.1936 1.3070 40 1 10.2047 -1.8227 0.4505 41 1 6.7116 -1.2691 3.7982 42 1 8.1554 -0.4030 6.0657 43 1 7.5909 1.0329 5.1781 44 1 5.2631 0.1863 5.2877 45 1 5.8271 -1.2498 6.1754 46 1 2.9024 -0.1062 8.0990 47 1 8.1299 1.0715 1.8424 48 1 7.9401 1.1659 0.0720 49 1 5.7620 1.5508 1.1439 50 1 5.9167 0.0324 2.0599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274753853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:59 Heat of formation + Delta-G solvation = 19.124256 kcal Electronic energy + Delta-G solvation = -30507.168895 eV Core-core repulsion = 26534.181545 eV Total energy + Delta-G solvation = -3972.987349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34220 -41.43110 -39.74988 -37.67082 -36.56690 -34.84676 -34.68246 -33.68002 -32.21318 -31.68069 -30.74460 -28.28927 -27.27601 -25.83571 -24.94063 -24.44627 -23.49100 -22.78474 -22.71599 -21.39092 -19.86921 -18.72643 -18.57056 -18.36452 -17.95355 -16.77096 -16.75002 -16.57784 -16.51251 -16.32172 -15.79879 -15.70848 -15.37075 -15.15166 -14.91115 -14.49638 -14.34518 -14.24508 -14.13811 -13.87899 -13.58491 -13.39529 -13.28256 -13.15392 -12.99595 -12.96956 -12.74408 -12.55718 -12.34841 -12.30241 -12.09518 -11.77593 -11.63337 -11.55199 -11.49608 -11.10501 -11.01511 -10.97692 -10.66301 -10.59233 -10.53096 -10.06494 -9.39299 -8.28656 -6.40210 -0.13642 -0.04436 1.37613 1.38801 1.52025 1.53873 2.17045 2.22088 2.40387 2.59656 2.73128 3.06151 3.20874 3.47951 3.54094 3.61217 3.67876 3.75447 3.78641 3.86293 4.03176 4.09051 4.15364 4.22471 4.36530 4.41614 4.46024 4.49139 4.50808 4.55752 4.68201 4.71759 4.77511 4.77617 4.82484 4.85146 4.93256 4.94904 5.05137 5.09330 5.10656 5.21514 5.24826 5.26946 5.34348 5.43500 5.49378 5.72490 5.72648 5.89223 6.10108 6.55926 6.73442 7.22716 7.30037 7.76322 8.83394 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006741 B = 0.003947 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4152.483935 B = 7091.767911 C =10559.017146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.034 3.966 3 C -0.092 4.092 4 C -0.135 4.135 5 C 0.235 3.765 6 N -0.459 5.459 7 C 0.064 3.936 8 C -0.068 4.068 9 C -0.094 4.094 10 C -0.121 4.121 11 C -0.197 4.197 12 H 0.146 0.854 13 C 0.539 3.461 14 O -0.587 6.587 15 N -0.714 5.714 16 C 0.142 3.858 17 C 0.026 3.974 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.277 1.277 26 C -0.078 4.078 27 C 0.063 3.937 28 N -0.311 5.311 29 N -0.264 5.264 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.190 0.810 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.403 0.597 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.266 0.734 47 H 0.056 0.944 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 1.274 -22.383 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.178 5.178 7 C -0.062 4.062 8 C -0.105 4.105 9 C -0.095 4.095 10 C -0.158 4.158 11 C -0.217 4.217 12 H 0.163 0.837 13 C 0.327 3.673 14 O -0.468 6.468 15 N -0.364 5.364 16 C 0.019 3.981 17 C -0.011 4.011 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.190 4.190 21 N -0.568 5.568 22 Si 0.790 3.210 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.115 4.115 27 C -0.063 4.063 28 N -0.157 5.157 29 N -0.105 5.105 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.207 0.793 34 H 0.192 0.808 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.238 0.762 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.021 0.979 45 H 0.020 0.980 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.112 0.888 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.773 0.202 -22.453 22.467 hybrid contribution -0.839 1.167 1.854 2.346 sum -0.066 1.370 -20.599 20.645 Atomic orbital electron populations 1.20739 0.85296 1.05121 1.04130 1.23376 1.00675 0.90370 0.97038 1.22662 0.93845 1.00907 0.94598 1.22364 0.96135 0.98340 0.99759 1.21765 0.91829 0.92201 0.94673 1.58949 1.01842 1.15719 1.41241 1.22080 0.96793 0.85631 1.01722 1.21309 0.91178 1.00109 0.97909 1.21618 0.97374 0.95767 0.94734 1.23096 0.90969 1.03681 0.98060 1.22488 1.10704 1.00852 0.87678 0.83668 1.20269 0.81631 0.80121 0.85280 1.90646 1.37728 1.46095 1.72372 1.46185 1.15055 1.51630 1.23528 1.21204 0.98470 0.94661 0.83791 1.19087 0.90812 0.96108 0.95102 1.21473 0.98798 1.31176 1.06953 0.92176 1.25883 0.95113 0.96320 1.01719 1.70080 1.03479 1.42731 1.40460 0.85390 0.78530 0.78416 0.78693 1.18784 1.20036 1.20273 1.21221 0.92469 0.94819 1.03013 1.22280 0.95884 0.98775 0.89325 1.73068 1.00172 1.27030 1.15392 1.72640 1.00992 1.26863 1.10042 0.89749 0.87391 0.90420 0.79288 0.80838 0.89509 0.94621 0.88603 0.88318 0.89087 0.84803 0.76233 0.93662 0.93331 0.97901 0.97966 0.92552 0.92515 0.88051 0.88760 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.19 71.24 0.73 -0.64 16 2 C 0.03 0.75 6.87 42.70 0.29 1.04 16 3 C -0.09 -1.62 9.86 22.48 0.22 -1.40 16 4 C -0.14 -2.73 9.25 22.65 0.21 -2.53 16 5 C 0.23 6.00 6.48 133.11 0.86 6.86 16 6 N -0.46 -10.23 4.61 -700.82 -3.23 -13.46 16 7 C 0.06 1.36 4.75 86.41 0.41 1.77 16 8 C -0.07 -1.03 5.87 30.76 0.18 -0.85 16 9 C -0.09 -1.77 2.02 -52.20 -0.11 -1.88 16 10 C -0.12 -2.25 9.51 30.52 0.29 -1.96 16 11 C -0.20 -4.54 5.87 -11.60 -0.07 -4.61 16 12 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 13 C 0.54 17.99 5.85 87.66 0.51 18.50 16 14 O -0.59 -24.15 16.56 -3.01 -0.05 -24.20 16 15 N -0.71 -25.49 5.39 -463.06 -2.49 -27.98 16 16 C 0.14 6.22 5.61 86.38 0.48 6.70 16 17 C 0.03 1.36 5.09 29.85 0.15 1.51 16 18 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.47 5.46 84.65 0.46 0.94 16 21 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 22 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 C -0.08 -1.63 5.52 30.75 0.17 -1.46 16 27 C 0.06 1.45 5.31 86.41 0.46 1.91 16 28 N -0.31 -9.43 9.82 -55.10 -0.54 -9.97 16 29 N -0.26 -7.85 11.41 -47.57 -0.54 -8.39 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.11 0.85 8.09 -2.38 -0.02 0.83 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.17 2.53 7.17 -2.91 -0.02 2.50 16 35 H 0.09 1.92 7.57 -2.39 -0.02 1.90 16 36 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 39 H 0.09 2.02 7.90 -2.39 -0.02 2.00 16 40 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.40 13.34 8.16 -92.71 -0.76 12.59 16 42 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.06 1.49 6.85 -2.39 -0.02 1.47 16 48 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.09 1.94 6.58 -2.39 -0.02 1.92 16 50 H 0.03 0.85 7.63 -2.39 -0.02 0.84 16 Total: -1.00 -75.23 406.25 1.13 -74.10 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.19 Total: 25.53 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.49 Total: -6.55 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -6.53 Total: -114.58 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.23 1.13 -74.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.226 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds