Wall clock time and date at job start Wed Apr 1 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38817 * 119.99068 * 2 1 4 4 C 1.38566 * 118.03777 * 179.74410 * 3 2 1 5 5 C 1.39481 * 117.89979 * 0.48584 * 4 3 2 6 6 N 1.39045 * 120.15378 * 179.75629 * 5 4 3 7 7 C 1.46812 * 110.99998 * 179.72608 * 6 5 4 8 8 C 1.53267 * 109.44998 * 170.80116 * 7 6 5 9 9 C 1.53225 * 108.61828 * 55.58999 * 8 7 6 10 10 C 1.52834 * 117.86304 * 162.97815 * 9 8 7 11 11 C 1.52759 * 117.79209 * 93.99798 * 9 8 7 12 12 H 1.08994 * 117.50616 * 215.32672 * 11 9 8 13 13 C 1.50702 * 117.50511 * 0.35443 * 11 9 8 14 14 O 1.21277 * 119.99927 * 66.53606 * 13 11 9 15 15 N 1.34777 * 120.00039 * 246.25835 * 13 11 9 16 16 C 1.46505 * 119.99892 * 180.27857 * 15 13 11 17 17 C 1.52997 * 109.47003 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47086 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99894 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99742 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99485 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47198 * 60.00092 * 22 20 18 24 24 H 1.48505 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47388 * 299.99661 * 22 20 18 26 26 C 1.53222 * 114.73978 * 308.58872 * 9 8 7 27 27 C 1.46816 * 111.00223 * 55.03183 * 6 5 4 28 28 N 1.32492 * 119.68885 * 359.48304 * 5 4 3 29 29 N 1.28347 * 122.06601 * 0.27743 * 28 5 4 30 30 H 1.09000 * 109.46895 * 270.02643 * 1 2 3 31 31 H 1.08993 * 109.46626 * 30.02237 * 1 2 3 32 32 H 1.08998 * 109.46867 * 150.02456 * 1 2 3 33 33 H 1.07996 * 120.97978 * 0.02562 * 3 2 1 34 34 H 1.07995 * 121.05070 * 180.24387 * 4 3 2 35 35 H 1.09000 * 109.47900 * 50.80761 * 7 6 5 36 36 H 1.09003 * 109.47740 * 290.79310 * 7 6 5 37 37 H 1.09005 * 109.61057 * 295.85697 * 8 7 6 38 38 H 1.08998 * 109.75844 * 175.41663 * 8 7 6 39 39 H 1.09001 * 117.49487 * 144.80840 * 10 9 8 40 40 H 1.08997 * 117.54929 * 359.72005 * 10 9 8 41 41 H 0.96995 * 119.99842 * 0.27460 * 15 13 11 42 42 H 1.09000 * 109.46743 * 299.99978 * 16 15 13 43 43 H 1.08994 * 109.47335 * 59.99742 * 16 15 13 44 44 H 1.09000 * 109.47426 * 299.99649 * 17 16 15 45 45 H 1.09001 * 109.47578 * 59.99688 * 17 16 15 46 46 H 0.97000 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09007 * 109.60744 * 171.15280 * 26 9 8 48 48 H 1.08996 * 109.61207 * 291.66920 * 26 9 8 49 49 H 1.09004 * 109.46686 * 309.18601 * 27 6 5 50 50 H 1.08997 * 109.47906 * 69.19902 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2023 0.0000 4 6 3.5858 1.1551 0.0055 5 6 4.1961 -0.0991 0.0002 6 7 5.5828 -0.2011 0.0002 7 6 6.0070 -1.6066 0.0007 8 6 7.5202 -1.6830 -0.2303 9 6 8.2212 -0.8330 0.8345 10 6 9.7153 -1.0613 1.0610 11 6 8.7004 -1.5345 2.1041 12 1 8.6428 -0.9776 3.0392 13 6 8.4557 -3.0174 2.2144 14 8 9.0258 -3.7834 1.4666 15 7 7.6076 -3.4929 3.1477 16 6 7.3744 -4.9350 3.2590 17 6 6.3781 -5.2049 4.3883 18 6 6.1378 -6.6882 4.5024 19 1 6.6452 -7.3702 3.8363 20 6 5.2701 -7.1746 5.4572 21 7 4.6526 -6.3441 6.2686 22 14 4.9716 -9.0132 5.5980 23 1 6.2536 -9.7015 5.8944 24 1 4.0047 -9.2752 6.6943 25 1 4.4196 -9.5246 4.3178 26 6 7.6879 0.5973 0.9665 27 6 6.1648 0.5388 1.1268 28 7 3.4483 -1.1928 0.0006 29 7 2.1659 -1.1414 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6769 2.1466 0.0004 34 1 4.1740 2.0608 0.0097 35 1 5.4904 -2.1425 -0.7955 36 1 5.7628 -2.0595 0.9616 37 1 7.7589 -1.2975 -1.2216 38 1 7.8534 -2.7177 -0.1501 39 1 10.3251 -0.1928 1.3099 40 1 10.2065 -1.8227 0.4551 41 1 7.1517 -2.8803 3.7458 42 1 6.9697 -5.3111 2.3194 43 1 8.3156 -5.4395 3.4770 44 1 6.7832 -4.8288 5.3278 45 1 5.4368 -4.7003 4.1708 46 1 4.0418 -6.6863 6.9400 47 1 8.1299 1.0732 1.8419 48 1 7.9401 1.1659 0.0714 49 1 5.7620 1.5516 1.1432 50 1 5.9167 0.0338 2.0603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274753854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:03 Heat of formation + Delta-G solvation = 42.031805 kcal Electronic energy + Delta-G solvation = -30146.361144 eV Core-core repulsion = 26174.367141 eV Total energy + Delta-G solvation = -3971.994004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50280 -40.34466 -38.60629 -36.63000 -34.77478 -33.91097 -32.88728 -32.79213 -31.35691 -30.12797 -29.57505 -27.51261 -25.49312 -24.98747 -23.85830 -23.17118 -22.72028 -21.87929 -20.91016 -20.11158 -18.86069 -17.79477 -17.57896 -16.87331 -16.27387 -15.89541 -15.74218 -15.30334 -15.06907 -14.87354 -14.71286 -14.51631 -14.29166 -14.09497 -13.68194 -13.57137 -13.46439 -12.93498 -12.91104 -12.81570 -12.68980 -12.42387 -12.26568 -11.95073 -11.86639 -11.49461 -11.20280 -11.19032 -10.98816 -10.79222 -10.71192 -10.63707 -10.34201 -10.28287 -10.18767 -9.93039 -9.73874 -9.67538 -9.41921 -9.15215 -8.53406 -8.49652 -8.32072 -6.06346 -4.09151 0.62766 0.75408 2.75970 3.05945 3.33919 3.37272 3.40302 3.42117 3.60518 3.79384 3.96621 4.28364 4.31552 4.42274 4.43468 4.48455 4.57305 4.65007 4.72550 4.78097 4.92285 5.03099 5.14761 5.15055 5.24198 5.28833 5.30762 5.33494 5.36592 5.38369 5.47156 5.56267 5.64213 5.65995 5.71651 5.78919 5.88720 5.98906 6.06282 6.09503 6.18296 6.36879 6.37704 6.58384 6.74940 6.76123 6.94297 7.53909 7.64263 7.91457 8.04039 8.30592 8.64890 8.67587 8.96405 9.55548 11.05288 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007512 B = 0.003272 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.366548 B = 8555.413803 C =11607.161378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.038 3.962 3 C -0.098 4.098 4 C -0.133 4.133 5 C 0.251 3.749 6 N -0.468 5.468 7 C 0.066 3.934 8 C -0.091 4.091 9 C -0.100 4.100 10 C -0.136 4.136 11 C -0.185 4.185 12 H 0.119 0.881 13 C 0.536 3.464 14 O -0.550 6.550 15 N -0.717 5.717 16 C 0.122 3.878 17 C 0.014 3.986 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.076 4.076 27 C 0.059 3.941 28 N -0.272 5.272 29 N -0.217 5.217 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.396 0.604 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 23.785 -12.344 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.127 4.127 4 C -0.165 4.165 5 C 0.012 3.988 6 N -0.186 5.186 7 C -0.061 4.061 8 C -0.128 4.128 9 C -0.100 4.100 10 C -0.173 4.173 11 C -0.206 4.206 12 H 0.137 0.863 13 C 0.322 3.678 14 O -0.429 6.429 15 N -0.366 5.366 16 C 0.000 4.000 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.114 4.114 27 C -0.067 4.067 28 N -0.119 5.119 29 N -0.059 5.059 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.229 0.771 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.324 21.734 -13.122 25.390 hybrid contribution -0.624 0.630 1.231 1.517 sum -0.949 22.364 -11.891 25.346 Atomic orbital electron populations 1.20616 0.87566 1.03774 1.03529 1.22813 0.99099 0.90448 0.98555 1.22166 0.94039 0.99785 0.96756 1.21949 0.95199 0.98106 1.01203 1.21543 0.91470 0.91512 0.94235 1.58871 1.02271 1.16077 1.41419 1.22095 0.95546 0.85149 1.03278 1.21418 0.92904 1.00809 0.97681 1.21501 0.97042 0.95601 0.95897 1.23019 0.91103 1.02754 1.00409 1.22490 1.08004 0.94332 0.95794 0.86315 1.19509 0.79204 0.88579 0.80546 1.90651 1.49879 1.58916 1.43455 1.46272 1.44693 1.10340 1.35284 1.21725 1.00152 0.77153 1.00952 1.19303 0.93351 0.97590 0.92106 1.21008 1.26044 0.91635 1.17361 0.92312 1.24986 0.95583 0.98153 0.95483 1.69943 1.28789 1.34510 1.20078 0.86576 0.78078 0.85159 0.77762 1.20128 1.21236 1.20039 1.21265 0.93068 0.94065 1.03013 1.22315 0.95573 0.98201 0.90571 1.73321 0.99586 1.25600 1.13347 1.72828 1.00819 1.24761 1.07503 0.90044 0.90568 0.90039 0.83308 0.83280 0.89056 0.92462 0.90411 0.89012 0.88101 0.87274 0.77068 0.92532 0.92596 0.96080 0.96004 0.92822 0.90299 0.89840 0.89800 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.19 36.01 0.37 -0.32 16 2 C 0.04 0.41 6.87 -82.39 -0.57 -0.16 16 3 C -0.10 -0.80 9.86 -39.25 -0.39 -1.19 16 4 C -0.13 -1.19 9.25 -39.00 -0.36 -1.55 16 5 C 0.25 3.08 6.48 -154.77 -1.00 2.07 16 6 N -0.47 -5.24 4.61 -172.86 -0.80 -6.04 16 7 C 0.07 0.87 4.75 -3.73 -0.02 0.86 16 8 C -0.09 -1.11 5.52 -26.48 -0.15 -1.26 16 9 C -0.10 -1.04 2.02 -154.49 -0.31 -1.35 16 10 C -0.14 -1.42 9.52 -26.80 -0.26 -1.67 16 11 C -0.18 -2.24 5.88 -91.88 -0.54 -2.78 16 12 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.54 9.05 6.56 -10.98 -0.07 8.98 16 14 O -0.55 -11.12 14.98 5.56 0.08 -11.04 16 15 N -0.72 -12.84 5.56 -60.29 -0.33 -13.18 16 16 C 0.12 2.68 5.61 -4.04 -0.02 2.66 16 17 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.08 -0.59 5.87 -26.48 -0.16 -0.75 16 27 C 0.06 0.52 5.31 -3.74 -0.02 0.50 16 28 N -0.27 -4.18 9.82 31.23 0.31 -3.87 16 29 N -0.22 -3.19 11.41 33.61 0.38 -2.81 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 0.88 7.17 -52.49 -0.38 0.50 16 35 H 0.09 1.33 7.57 -51.93 -0.39 0.93 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.38 5.97 -51.93 -0.31 1.07 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.33 7.67 -51.93 -0.40 0.93 16 41 H 0.40 6.31 8.47 -40.82 -0.35 5.96 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.54 6.59 -51.93 -0.34 0.20 16 50 H 0.05 0.54 8.12 -51.93 -0.42 0.11 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -34.74 405.26 -10.62 -45.36 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.04 Total: 3.86 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -4.04 Total: -9.29 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.29 Total: -51.82 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.74 -10.62 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.389 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds