Wall clock time and date at job start Wed Apr 1 2020 03:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38817 * 119.99068 * 2 1 4 4 C 1.38566 * 118.03777 * 179.74410 * 3 2 1 5 5 C 1.39481 * 117.89979 * 0.48584 * 4 3 2 6 6 N 1.39045 * 120.15378 * 179.75629 * 5 4 3 7 7 C 1.46812 * 110.99998 * 179.72608 * 6 5 4 8 8 C 1.53267 * 109.44998 * 170.80116 * 7 6 5 9 9 C 1.53225 * 108.61828 * 55.58999 * 8 7 6 10 10 C 1.52834 * 117.86304 * 162.97815 * 9 8 7 11 11 C 1.52759 * 117.79209 * 93.99798 * 9 8 7 12 12 H 1.08994 * 117.50616 * 215.32672 * 11 9 8 13 13 C 1.50702 * 117.50511 * 0.35443 * 11 9 8 14 14 O 1.21277 * 119.99927 * 66.53606 * 13 11 9 15 15 N 1.34777 * 120.00039 * 246.25835 * 13 11 9 16 16 C 1.46505 * 119.99892 * 180.27857 * 15 13 11 17 17 C 1.52997 * 109.47003 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47086 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99894 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99742 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99485 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47198 * 60.00092 * 22 20 18 24 24 H 1.48505 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47388 * 299.99661 * 22 20 18 26 26 C 1.53222 * 114.73978 * 308.58872 * 9 8 7 27 27 C 1.46816 * 111.00223 * 55.03183 * 6 5 4 28 28 N 1.32492 * 119.68885 * 359.48304 * 5 4 3 29 29 N 1.28347 * 122.06601 * 0.27743 * 28 5 4 30 30 H 1.09000 * 109.46895 * 270.02643 * 1 2 3 31 31 H 1.08993 * 109.46626 * 30.02237 * 1 2 3 32 32 H 1.08998 * 109.46867 * 150.02456 * 1 2 3 33 33 H 1.07996 * 120.97978 * 0.02562 * 3 2 1 34 34 H 1.07995 * 121.05070 * 180.24387 * 4 3 2 35 35 H 1.09000 * 109.47900 * 50.80761 * 7 6 5 36 36 H 1.09003 * 109.47740 * 290.79310 * 7 6 5 37 37 H 1.09005 * 109.61057 * 295.85697 * 8 7 6 38 38 H 1.08998 * 109.75844 * 175.41663 * 8 7 6 39 39 H 1.09001 * 117.49487 * 144.80840 * 10 9 8 40 40 H 1.08997 * 117.54929 * 359.72005 * 10 9 8 41 41 H 0.96995 * 119.99842 * 0.27460 * 15 13 11 42 42 H 1.09000 * 109.46743 * 299.99978 * 16 15 13 43 43 H 1.08994 * 109.47335 * 59.99742 * 16 15 13 44 44 H 1.09000 * 109.47426 * 299.99649 * 17 16 15 45 45 H 1.09001 * 109.47578 * 59.99688 * 17 16 15 46 46 H 0.97000 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09007 * 109.60744 * 171.15280 * 26 9 8 48 48 H 1.08996 * 109.61207 * 291.66920 * 26 9 8 49 49 H 1.09004 * 109.46686 * 309.18601 * 27 6 5 50 50 H 1.08997 * 109.47906 * 69.19902 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2023 0.0000 4 6 3.5858 1.1551 0.0055 5 6 4.1961 -0.0991 0.0002 6 7 5.5828 -0.2011 0.0002 7 6 6.0070 -1.6066 0.0007 8 6 7.5202 -1.6830 -0.2303 9 6 8.2212 -0.8330 0.8345 10 6 9.7153 -1.0613 1.0610 11 6 8.7004 -1.5345 2.1041 12 1 8.6428 -0.9776 3.0392 13 6 8.4557 -3.0174 2.2144 14 8 9.0258 -3.7834 1.4666 15 7 7.6076 -3.4929 3.1477 16 6 7.3744 -4.9350 3.2590 17 6 6.3781 -5.2049 4.3883 18 6 6.1378 -6.6882 4.5024 19 1 6.6452 -7.3702 3.8363 20 6 5.2701 -7.1746 5.4572 21 7 4.6526 -6.3441 6.2686 22 14 4.9716 -9.0132 5.5980 23 1 6.2536 -9.7015 5.8944 24 1 4.0047 -9.2752 6.6943 25 1 4.4196 -9.5246 4.3178 26 6 7.6879 0.5973 0.9665 27 6 6.1648 0.5388 1.1268 28 7 3.4483 -1.1928 0.0006 29 7 2.1659 -1.1414 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6769 2.1466 0.0004 34 1 4.1740 2.0608 0.0097 35 1 5.4904 -2.1425 -0.7955 36 1 5.7628 -2.0595 0.9616 37 1 7.7589 -1.2975 -1.2216 38 1 7.8534 -2.7177 -0.1501 39 1 10.3251 -0.1928 1.3099 40 1 10.2065 -1.8227 0.4551 41 1 7.1517 -2.8803 3.7458 42 1 6.9697 -5.3111 2.3194 43 1 8.3156 -5.4395 3.4770 44 1 6.7832 -4.8288 5.3278 45 1 5.4368 -4.7003 4.1708 46 1 4.0418 -6.6863 6.9400 47 1 8.1299 1.0732 1.8419 48 1 7.9401 1.1659 0.0714 49 1 5.7620 1.5516 1.1432 50 1 5.9167 0.0338 2.0603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274753854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:02 Heat of formation + Delta-G solvation = 18.378479 kcal Electronic energy + Delta-G solvation = -30147.386830 eV Core-core repulsion = 26174.367141 eV Total energy + Delta-G solvation = -3973.019689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34603 -41.43784 -39.75024 -37.66067 -36.51865 -34.85225 -34.67909 -33.69873 -32.17546 -31.72186 -30.74344 -28.31679 -27.25915 -25.83733 -25.06039 -24.22247 -23.57481 -22.81660 -22.68171 -21.35847 -19.88587 -18.76697 -18.58871 -18.37572 -17.90986 -16.80259 -16.62314 -16.53717 -16.52386 -16.40246 -15.78935 -15.72109 -15.35553 -15.16312 -14.90055 -14.49445 -14.32299 -14.24571 -14.17604 -13.86507 -13.60550 -13.39892 -13.28789 -13.12661 -13.00330 -12.84704 -12.77333 -12.58223 -12.33543 -12.26821 -12.06733 -11.77293 -11.64593 -11.56530 -11.52006 -11.11291 -11.01880 -10.92373 -10.65195 -10.61451 -10.48974 -10.04072 -9.41682 -8.28732 -6.40096 -0.10248 -0.01580 1.37250 1.40597 1.48411 1.49558 2.20571 2.24589 2.41274 2.58866 2.81676 3.05660 3.18549 3.51811 3.55292 3.63046 3.71823 3.77528 3.79562 3.90429 4.01708 4.11805 4.16717 4.23956 4.37400 4.40497 4.43579 4.47117 4.48644 4.58486 4.66245 4.72812 4.76617 4.76821 4.83101 4.86582 4.93463 4.97024 5.06977 5.09044 5.13356 5.21684 5.24341 5.31478 5.35358 5.44189 5.49827 5.72266 5.72837 5.88577 6.10307 6.59651 6.72357 7.25979 7.29384 7.80780 8.83152 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007512 B = 0.003272 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.366548 B = 8555.413803 C =11607.161378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.031 3.969 3 C -0.087 4.087 4 C -0.125 4.125 5 C 0.232 3.768 6 N -0.460 5.460 7 C 0.079 3.921 8 C -0.087 4.087 9 C -0.090 4.090 10 C -0.120 4.120 11 C -0.198 4.198 12 H 0.149 0.851 13 C 0.532 3.468 14 O -0.588 6.588 15 N -0.717 5.717 16 C 0.143 3.857 17 C 0.027 3.973 18 C -0.551 4.551 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.066 4.066 27 C 0.053 3.947 28 N -0.330 5.330 29 N -0.275 5.275 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.199 0.801 34 H 0.190 0.810 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.406 0.594 42 H 0.038 0.962 43 H 0.047 0.953 44 H 0.009 0.991 45 H 0.000 1.000 46 H 0.267 0.733 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.119 0.881 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 27.791 -12.385 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.115 4.115 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.178 5.178 7 C -0.049 4.049 8 C -0.124 4.124 9 C -0.091 4.091 10 C -0.157 4.157 11 C -0.218 4.218 12 H 0.167 0.833 13 C 0.321 3.679 14 O -0.470 6.470 15 N -0.367 5.367 16 C 0.019 3.981 17 C -0.011 4.011 18 C -0.589 4.589 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.103 4.103 27 C -0.072 4.072 28 N -0.175 5.175 29 N -0.116 5.116 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.216 0.784 34 H 0.207 0.793 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.241 0.759 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.018 0.982 46 H 0.075 0.925 47 H 0.128 0.872 48 H 0.122 0.878 49 H 0.137 0.863 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.087 25.753 -13.161 28.922 hybrid contribution -0.781 -0.565 1.194 1.534 sum -0.868 25.188 -11.967 27.900 Atomic orbital electron populations 1.20745 0.85418 1.04900 1.04255 1.23478 1.00681 0.90627 0.97008 1.22705 0.93858 1.00584 0.94380 1.22397 0.95941 0.97800 0.99402 1.21915 0.91719 0.92509 0.94682 1.59014 1.02137 1.14178 1.42487 1.21756 0.95985 0.86820 1.00294 1.21303 0.92263 0.99400 0.99479 1.21612 0.97239 0.96759 0.93510 1.23134 0.91075 1.03143 0.98349 1.22518 1.10508 0.90670 0.98129 0.83335 1.20397 0.77671 0.90867 0.78951 1.90627 1.51152 1.60634 1.44566 1.46121 1.45537 1.08667 1.36347 1.21165 0.98462 0.79879 0.98564 1.19081 0.93024 0.96316 0.92633 1.21431 1.26646 0.93051 1.17805 0.92392 1.25898 0.95053 1.03271 0.94897 1.70053 1.29213 1.36710 1.20570 0.85483 0.78439 0.79036 0.78032 1.19020 1.20237 1.19517 1.21350 0.91819 0.91735 1.05430 1.22555 0.96619 0.99244 0.88806 1.73155 1.00437 1.28078 1.15802 1.72701 1.00985 1.27547 1.10333 0.89365 0.86997 0.91350 0.78413 0.79252 0.91699 0.96029 0.89057 0.92663 0.84064 0.89514 0.75851 0.94343 0.93416 0.97226 0.98189 0.92461 0.87171 0.87815 0.86255 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.19 71.24 0.73 -0.51 16 2 C 0.03 0.64 6.87 42.71 0.29 0.93 16 3 C -0.09 -1.13 9.86 22.49 0.22 -0.91 16 4 C -0.12 -1.86 9.25 22.65 0.21 -1.65 16 5 C 0.23 5.66 6.48 133.11 0.86 6.53 16 6 N -0.46 -10.05 4.61 -700.79 -3.23 -13.28 16 7 C 0.08 2.28 4.75 86.41 0.41 2.69 16 8 C -0.09 -2.22 5.52 30.76 0.17 -2.05 16 9 C -0.09 -1.73 2.02 -52.17 -0.11 -1.84 16 10 C -0.12 -2.22 9.52 30.55 0.29 -1.93 16 11 C -0.20 -4.54 5.88 -11.61 -0.07 -4.61 16 12 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 13 C 0.53 18.71 6.56 87.66 0.58 19.28 16 14 O -0.59 -25.17 14.98 -3.02 -0.05 -25.22 16 15 N -0.72 -27.15 5.56 -463.06 -2.57 -29.72 16 16 C 0.14 6.69 5.61 86.38 0.48 7.18 16 17 C 0.03 1.45 5.09 29.85 0.15 1.60 16 18 C -0.55 -32.50 9.11 25.60 0.23 -32.26 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 22 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C -0.07 -0.74 5.87 30.76 0.18 -0.56 16 27 C 0.05 0.78 5.31 86.41 0.46 1.24 16 28 N -0.33 -10.92 9.82 -55.10 -0.54 -11.46 16 29 N -0.28 -8.63 11.41 -47.57 -0.54 -9.18 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.62 8.09 -2.39 -0.02 0.61 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.20 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.19 1.17 7.17 -2.91 -0.02 1.15 16 35 H 0.06 2.15 7.57 -2.39 -0.02 2.13 16 36 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 37 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.05 1.82 5.97 -2.39 -0.01 1.81 16 39 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 41 H 0.41 13.58 8.47 -92.71 -0.79 12.80 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 47 H 0.11 0.67 8.08 -2.38 -0.02 0.65 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.12 0.95 6.59 -2.38 -0.02 0.93 16 50 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 Total: -1.00 -84.01 405.26 1.09 -82.92 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.16 Total: 20.60 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.56 Total: -5.95 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.61 Total: -119.78 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -84.01 1.09 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.296 kcal (2) G-P(sol) polarization free energy of solvation -84.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds