Wall clock time and date at job start Wed Apr 1 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38820 * 119.99366 * 2 1 4 4 C 1.38560 * 118.03901 * 180.25304 * 3 2 1 5 5 C 1.39488 * 117.90234 * 359.50929 * 4 3 2 6 6 N 1.39043 * 120.15641 * 180.24503 * 5 4 3 7 7 C 1.46846 * 111.00294 * 55.90069 * 6 5 4 8 8 C 1.53146 * 109.46634 * 186.34228 * 7 6 5 9 9 C 1.52544 * 109.30910 * 301.71575 * 8 7 6 10 10 C 1.54129 * 110.07756 * 178.09180 * 9 8 7 11 11 C 1.54588 * 101.64929 * 143.31514 * 10 9 8 12 12 N 1.46824 * 105.49978 * 335.02731 * 11 10 9 13 13 C 1.46500 * 124.36135 * 196.95682 * 12 11 10 14 14 C 1.52996 * 109.47009 * 269.98444 * 13 12 11 15 15 C 1.50699 * 109.47395 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99648 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00357 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00099 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47130 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 119.99684 * 19 17 15 22 22 H 1.48500 * 109.47398 * 239.99705 * 19 17 15 23 23 C 1.34578 * 111.27829 * 16.91624 * 12 11 10 24 24 O 1.21279 * 125.03331 * 179.29480 * 23 12 11 25 25 C 1.52545 * 110.48386 * 56.31116 * 9 8 7 26 26 C 1.46857 * 110.99845 * 180.23613 * 6 5 4 27 27 N 1.32494 * 119.68500 * 0.47568 * 5 4 3 28 28 N 1.28345 * 122.06910 * 359.76570 * 27 5 4 29 29 H 1.08993 * 109.47106 * 89.99970 * 1 2 3 30 30 H 1.08995 * 109.47122 * 210.00671 * 1 2 3 31 31 H 1.09001 * 109.46790 * 329.99889 * 1 2 3 32 32 H 1.08002 * 120.97793 * 359.97145 * 3 2 1 33 33 H 1.07991 * 121.04998 * 179.72633 * 4 3 2 34 34 H 1.09004 * 109.47200 * 306.34026 * 7 6 5 35 35 H 1.08999 * 109.47435 * 66.34285 * 7 6 5 36 36 H 1.09001 * 109.49504 * 181.76912 * 8 7 6 37 37 H 1.08996 * 109.52542 * 61.68345 * 8 7 6 38 38 H 1.09001 * 110.98991 * 261.40823 * 10 9 8 39 39 H 1.09003 * 110.99139 * 25.22653 * 10 9 8 40 40 H 1.08997 * 110.24254 * 216.01574 * 11 10 9 41 41 H 1.09000 * 110.31066 * 94.06628 * 11 10 9 42 42 H 1.08997 * 109.46934 * 29.97946 * 13 12 11 43 43 H 1.08992 * 109.47097 * 149.98078 * 13 12 11 44 44 H 1.09008 * 109.47133 * 299.99895 * 14 13 12 45 45 H 1.08998 * 109.47452 * 59.99474 * 14 13 12 46 46 H 0.97004 * 120.00152 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.49362 * 183.73608 * 25 9 8 48 48 H 1.09002 * 109.52131 * 63.66038 * 25 9 8 49 49 H 1.08998 * 109.46792 * 293.65973 * 26 6 5 50 50 H 1.08997 * 109.47668 * 53.66883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2023 0.0000 4 6 3.5858 1.1550 -0.0054 5 6 4.1962 -0.0992 0.0001 6 7 5.5828 -0.2012 0.0001 7 6 6.1644 0.5318 1.1319 8 6 7.6911 0.5300 1.0107 9 6 8.1928 -0.9101 0.9778 10 6 9.7246 -0.9330 0.8079 11 6 10.1189 -2.1373 1.6934 12 7 9.0425 -2.2651 2.6838 13 6 9.1518 -3.0276 3.9299 14 6 8.7054 -4.4705 3.6857 15 6 8.8172 -5.2548 4.9676 16 1 9.1716 -4.7724 5.8666 17 6 8.4670 -6.5881 4.9929 18 7 8.0349 -7.1753 3.8984 19 14 8.6062 -7.5604 6.5818 20 1 9.1146 -6.6756 7.6607 21 1 7.2694 -8.0849 6.9599 22 1 9.5459 -8.6938 6.3879 23 6 7.9429 -1.5909 2.2998 24 8 6.9048 -1.5386 2.9246 25 6 7.5284 -1.6811 -0.1585 26 6 6.0071 -1.6072 0.0007 27 7 3.4483 -1.1929 0.0005 28 7 2.1658 -1.1415 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6769 2.1466 -0.0005 33 1 4.1740 2.0607 -0.0101 34 1 5.8005 1.5592 1.1249 35 1 5.8735 0.0496 2.0652 36 1 8.1246 1.0468 1.8669 37 1 7.9842 1.0385 0.0922 38 1 9.9995 -1.1067 -0.2324 39 1 10.1725 -0.0116 1.1800 40 1 11.0688 -1.9440 2.1917 41 1 10.1869 -3.0434 1.0914 42 1 10.1871 -3.0204 4.2707 43 1 8.5159 -2.5743 4.6902 44 1 7.6700 -4.4778 3.3449 45 1 9.3413 -4.9239 2.9253 46 1 7.7881 -8.1133 3.9162 47 1 7.8474 -2.7229 -0.1264 48 1 7.8160 -1.2418 -1.1137 49 1 5.7172 -2.0737 0.9421 50 1 5.5292 -2.1313 -0.8270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274754206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:24 Heat of formation + Delta-G solvation = 28.235752 kcal Electronic energy + Delta-G solvation = -30849.103897 eV Core-core repulsion = 26876.511652 eV Total energy + Delta-G solvation = -3972.592245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53954 -40.76496 -38.13086 -36.13414 -34.97255 -33.78160 -33.20386 -32.10711 -31.13326 -30.38352 -28.59236 -27.66754 -25.79650 -24.94069 -24.59180 -23.11053 -22.52370 -21.88413 -21.33133 -20.24825 -18.38335 -17.74382 -17.44485 -16.62399 -15.87875 -15.79331 -15.71350 -15.39995 -14.91346 -14.76148 -14.48257 -14.33244 -14.25818 -13.75446 -13.53429 -13.36356 -13.19044 -12.99736 -12.88825 -12.67633 -12.58099 -12.32242 -12.20029 -12.14651 -11.90773 -11.61478 -11.32181 -11.29663 -11.07470 -10.95549 -10.68018 -10.61085 -10.49784 -10.35917 -10.22221 -9.97679 -9.85190 -9.58069 -9.28772 -9.03062 -8.36949 -8.28909 -8.02864 -6.01388 -4.05085 0.72851 0.86434 3.00124 3.20070 3.31245 3.38289 3.41799 3.52596 3.59096 4.06541 4.30108 4.38081 4.39510 4.46218 4.47672 4.57798 4.64245 4.86099 4.89109 5.02339 5.10973 5.18587 5.22734 5.31077 5.32585 5.34796 5.40722 5.46615 5.54910 5.59411 5.65211 5.69876 5.72290 5.74953 5.80990 5.93488 5.95858 5.98168 6.06273 6.09703 6.12966 6.26636 6.44542 6.72998 6.80281 6.90030 6.99836 7.50967 7.67278 7.84978 7.97953 8.34011 8.66347 8.74897 9.01675 9.59068 11.09975 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002949 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.528710 B = 9493.182322 C =11335.699805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.034 3.966 3 C -0.100 4.100 4 C -0.133 4.133 5 C 0.258 3.742 6 N -0.466 5.466 7 C 0.045 3.955 8 C -0.088 4.088 9 C -0.098 4.098 10 C -0.123 4.123 11 C 0.100 3.900 12 N -0.609 5.609 13 C 0.128 3.872 14 C 0.012 3.988 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.521 3.479 24 O -0.528 6.528 25 C -0.095 4.095 26 C 0.057 3.943 27 N -0.273 5.273 28 N -0.219 5.219 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.261 0.739 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 21.787 -12.368 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.128 4.128 4 C -0.164 4.164 5 C 0.019 3.981 6 N -0.184 5.184 7 C -0.081 4.081 8 C -0.127 4.127 9 C -0.102 4.102 10 C -0.161 4.161 11 C -0.023 4.023 12 N -0.342 5.342 13 C 0.008 3.992 14 C -0.026 4.026 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.308 3.692 24 O -0.405 6.405 25 C -0.133 4.133 26 C -0.070 4.070 27 N -0.120 5.120 28 N -0.062 5.062 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.440 20.126 -12.417 24.062 hybrid contribution 0.054 0.534 1.340 1.443 sum -4.385 20.660 -11.078 23.849 Atomic orbital electron populations 1.20589 0.87701 1.03804 1.03211 1.22770 0.98978 0.90528 0.99093 1.22139 0.94037 0.99709 0.96961 1.21948 0.95165 0.98179 1.01108 1.21536 0.91603 0.91383 0.93583 1.59044 1.02184 1.15946 1.41205 1.22531 0.95216 0.98112 0.92217 1.21386 0.94018 0.94319 1.02942 1.21113 0.96684 0.96911 0.95449 1.22681 0.93486 0.98798 1.01124 1.22066 0.91245 0.98226 0.90778 1.48584 1.13830 1.49882 1.21878 1.21808 1.00833 0.94123 0.82442 1.19398 0.97230 0.88527 0.97400 1.21108 1.44455 0.94960 0.95628 0.92499 1.25003 0.95067 0.97854 0.96351 1.69981 1.44122 1.11684 1.27171 0.86507 0.77764 0.79965 0.83590 1.19697 1.20918 1.20979 1.20402 0.83417 0.79144 0.86271 1.90644 1.27159 1.62990 1.59692 1.21480 0.94055 1.00872 0.96924 1.22156 0.95017 0.85761 1.04044 1.73302 0.99445 1.25728 1.13496 1.72791 1.00984 1.24797 1.07590 0.90284 0.90119 0.90619 0.83412 0.83324 0.90409 0.90064 0.90611 0.90118 0.89191 0.90057 0.90614 0.91008 0.91677 0.91234 0.96098 0.96500 0.92957 0.90067 0.90034 0.91168 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.19 36.01 0.37 -0.35 16 2 C 0.03 0.39 6.87 -82.39 -0.57 -0.18 16 3 C -0.10 -0.92 9.86 -39.25 -0.39 -1.30 16 4 C -0.13 -1.39 9.28 -39.00 -0.36 -1.75 16 5 C 0.26 3.61 6.47 -154.77 -1.00 2.61 16 6 N -0.47 -6.18 4.67 -172.94 -0.81 -6.99 16 7 C 0.04 0.55 5.03 -3.78 -0.02 0.53 16 8 C -0.09 -0.94 4.77 -26.89 -0.13 -1.07 16 9 C -0.10 -1.24 0.55 -155.49 -0.09 -1.32 16 10 C -0.12 -1.20 6.21 -25.31 -0.16 -1.36 16 11 C 0.10 1.30 7.36 -3.03 -0.02 1.28 16 12 N -0.61 -10.84 2.94 -172.47 -0.51 -11.34 16 13 C 0.13 2.71 5.87 -4.04 -0.02 2.69 16 14 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16 15 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.52 9.31 6.33 -11.03 -0.07 9.24 16 24 O -0.53 -11.50 13.85 5.56 0.08 -11.42 16 25 C -0.10 -1.21 4.77 -26.89 -0.13 -1.34 16 26 C 0.06 0.85 4.45 -3.77 -0.02 0.84 16 27 N -0.27 -4.56 9.88 31.23 0.31 -4.26 16 28 N -0.22 -3.41 11.41 33.61 0.38 -3.03 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.15 1.12 7.22 -52.49 -0.38 0.74 16 34 H 0.08 0.75 6.72 -51.93 -0.35 0.40 16 35 H 0.08 1.31 5.78 -51.93 -0.30 1.01 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 39 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.56 7.94 -51.93 -0.41 1.15 16 44 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.35 6.67 -51.93 -0.35 1.00 16 50 H 0.09 1.35 7.70 -51.93 -0.40 0.95 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -36.24 394.32 -10.09 -46.33 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.04 Total: -0.64 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -3.16 Total: -4.98 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.11 Total: -52.21 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.24 -10.09 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274754206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.566 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds