Wall clock time and date at job start Wed Apr 1 2020 03:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38820 * 119.99366 * 2 1 4 4 C 1.38560 * 118.03901 * 180.25304 * 3 2 1 5 5 C 1.39488 * 117.90234 * 359.50929 * 4 3 2 6 6 N 1.39043 * 120.15641 * 180.24503 * 5 4 3 7 7 C 1.46846 * 111.00294 * 55.90069 * 6 5 4 8 8 C 1.53146 * 109.46634 * 186.34228 * 7 6 5 9 9 C 1.52544 * 109.30910 * 301.71575 * 8 7 6 10 10 C 1.54129 * 110.07756 * 178.09180 * 9 8 7 11 11 C 1.54588 * 101.64929 * 143.31514 * 10 9 8 12 12 N 1.46824 * 105.49978 * 335.02731 * 11 10 9 13 13 C 1.46500 * 124.36135 * 196.95682 * 12 11 10 14 14 C 1.52996 * 109.47009 * 269.98444 * 13 12 11 15 15 C 1.50699 * 109.47395 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99648 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00357 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00099 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47130 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 119.99684 * 19 17 15 22 22 H 1.48500 * 109.47398 * 239.99705 * 19 17 15 23 23 C 1.34578 * 111.27829 * 16.91624 * 12 11 10 24 24 O 1.21279 * 125.03331 * 179.29480 * 23 12 11 25 25 C 1.52545 * 110.48386 * 56.31116 * 9 8 7 26 26 C 1.46857 * 110.99845 * 180.23613 * 6 5 4 27 27 N 1.32494 * 119.68500 * 0.47568 * 5 4 3 28 28 N 1.28345 * 122.06910 * 359.76570 * 27 5 4 29 29 H 1.08993 * 109.47106 * 89.99970 * 1 2 3 30 30 H 1.08995 * 109.47122 * 210.00671 * 1 2 3 31 31 H 1.09001 * 109.46790 * 329.99889 * 1 2 3 32 32 H 1.08002 * 120.97793 * 359.97145 * 3 2 1 33 33 H 1.07991 * 121.04998 * 179.72633 * 4 3 2 34 34 H 1.09004 * 109.47200 * 306.34026 * 7 6 5 35 35 H 1.08999 * 109.47435 * 66.34285 * 7 6 5 36 36 H 1.09001 * 109.49504 * 181.76912 * 8 7 6 37 37 H 1.08996 * 109.52542 * 61.68345 * 8 7 6 38 38 H 1.09001 * 110.98991 * 261.40823 * 10 9 8 39 39 H 1.09003 * 110.99139 * 25.22653 * 10 9 8 40 40 H 1.08997 * 110.24254 * 216.01574 * 11 10 9 41 41 H 1.09000 * 110.31066 * 94.06628 * 11 10 9 42 42 H 1.08997 * 109.46934 * 29.97946 * 13 12 11 43 43 H 1.08992 * 109.47097 * 149.98078 * 13 12 11 44 44 H 1.09008 * 109.47133 * 299.99895 * 14 13 12 45 45 H 1.08998 * 109.47452 * 59.99474 * 14 13 12 46 46 H 0.97004 * 120.00152 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.49362 * 183.73608 * 25 9 8 48 48 H 1.09002 * 109.52131 * 63.66038 * 25 9 8 49 49 H 1.08998 * 109.46792 * 293.65973 * 26 6 5 50 50 H 1.08997 * 109.47668 * 53.66883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2023 0.0000 4 6 3.5858 1.1550 -0.0054 5 6 4.1962 -0.0992 0.0001 6 7 5.5828 -0.2012 0.0001 7 6 6.1644 0.5318 1.1319 8 6 7.6911 0.5300 1.0107 9 6 8.1928 -0.9101 0.9778 10 6 9.7246 -0.9330 0.8079 11 6 10.1189 -2.1373 1.6934 12 7 9.0425 -2.2651 2.6838 13 6 9.1518 -3.0276 3.9299 14 6 8.7054 -4.4705 3.6857 15 6 8.8172 -5.2548 4.9676 16 1 9.1716 -4.7724 5.8666 17 6 8.4670 -6.5881 4.9929 18 7 8.0349 -7.1753 3.8984 19 14 8.6062 -7.5604 6.5818 20 1 9.1146 -6.6756 7.6607 21 1 7.2694 -8.0849 6.9599 22 1 9.5459 -8.6938 6.3879 23 6 7.9429 -1.5909 2.2998 24 8 6.9048 -1.5386 2.9246 25 6 7.5284 -1.6811 -0.1585 26 6 6.0071 -1.6072 0.0007 27 7 3.4483 -1.1929 0.0005 28 7 2.1658 -1.1415 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6769 2.1466 -0.0005 33 1 4.1740 2.0607 -0.0101 34 1 5.8005 1.5592 1.1249 35 1 5.8735 0.0496 2.0652 36 1 8.1246 1.0468 1.8669 37 1 7.9842 1.0385 0.0922 38 1 9.9995 -1.1067 -0.2324 39 1 10.1725 -0.0116 1.1800 40 1 11.0688 -1.9440 2.1917 41 1 10.1869 -3.0434 1.0914 42 1 10.1871 -3.0204 4.2707 43 1 8.5159 -2.5743 4.6902 44 1 7.6700 -4.4778 3.3449 45 1 9.3413 -4.9239 2.9253 46 1 7.7881 -8.1133 3.9162 47 1 7.8474 -2.7229 -0.1264 48 1 7.8160 -1.2418 -1.1137 49 1 5.7172 -2.0737 0.9421 50 1 5.5292 -2.1313 -0.8270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274754206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:23 Heat of formation + Delta-G solvation = 2.985107 kcal Electronic energy + Delta-G solvation = -30850.198847 eV Core-core repulsion = 26876.511652 eV Total energy + Delta-G solvation = -3973.687195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58194 -41.85526 -39.25008 -37.54154 -36.36895 -35.11470 -34.60199 -33.35702 -32.18783 -31.79524 -29.94735 -28.58409 -27.21283 -26.47575 -25.55447 -24.16901 -23.58533 -23.45199 -22.34941 -21.67172 -19.65977 -18.78696 -18.70907 -18.36813 -17.21316 -17.09967 -16.62426 -16.60110 -16.45425 -16.12249 -15.72648 -15.38863 -15.13894 -14.98909 -14.72694 -14.52700 -14.48240 -14.19940 -14.13866 -13.90736 -13.70857 -13.42021 -13.30800 -13.20605 -13.09614 -13.00005 -12.87373 -12.67193 -12.41485 -12.29509 -12.10471 -12.00514 -11.86552 -11.61790 -11.46390 -11.41312 -11.29796 -11.07817 -10.66310 -10.51149 -10.41227 -9.55487 -9.38775 -8.28104 -6.41777 -0.12024 -0.03023 1.34471 1.36699 1.49686 1.62846 2.14484 2.26174 2.38296 2.63062 3.05202 3.18113 3.26573 3.43781 3.56380 3.61364 3.71599 3.84307 3.96996 4.01003 4.10561 4.16687 4.27683 4.29751 4.39137 4.41025 4.52941 4.54929 4.59575 4.65718 4.69651 4.73144 4.75692 4.77459 4.82219 4.85697 4.92250 5.01763 5.02949 5.06783 5.12197 5.23417 5.24330 5.29697 5.34101 5.41323 5.57866 5.70897 5.79127 5.88381 6.10731 6.33452 6.74290 7.25736 7.29136 7.78986 8.84294 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002949 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.528710 B = 9493.182322 C =11335.699805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.030 3.970 3 C -0.087 4.087 4 C -0.127 4.127 5 C 0.231 3.769 6 N -0.449 5.449 7 C 0.042 3.958 8 C -0.082 4.082 9 C -0.090 4.090 10 C -0.103 4.103 11 C 0.089 3.911 12 N -0.620 5.620 13 C 0.143 3.857 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.067 0.933 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.972 3.028 20 H -0.257 1.257 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.504 3.496 24 O -0.581 6.581 25 C -0.089 4.089 26 C 0.065 3.935 27 N -0.330 5.330 28 N -0.275 5.275 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.200 0.800 33 H 0.188 0.812 34 H 0.113 0.887 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.049 0.951 44 H -0.035 1.035 45 H -0.001 1.001 46 H 0.264 0.736 47 H 0.060 0.940 48 H 0.122 0.878 49 H 0.011 0.989 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 25.830 -13.196 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.158 4.158 5 C -0.008 4.008 6 N -0.168 5.168 7 C -0.083 4.083 8 C -0.120 4.120 9 C -0.094 4.094 10 C -0.140 4.140 11 C -0.033 4.033 12 N -0.352 5.352 13 C 0.021 3.979 14 C -0.012 4.012 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.796 3.204 20 H -0.180 1.180 21 H -0.209 1.209 22 H -0.196 1.196 23 C 0.293 3.707 24 O -0.461 6.461 25 C -0.127 4.127 26 C -0.062 4.062 27 N -0.175 5.175 28 N -0.115 5.115 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.217 0.783 33 H 0.205 0.795 34 H 0.131 0.869 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.067 0.933 44 H -0.016 1.016 45 H 0.017 0.983 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.141 0.859 49 H 0.030 0.970 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.861 24.173 -13.273 27.725 hybrid contribution -0.606 -0.720 1.593 1.850 sum -3.467 23.454 -11.680 26.429 Atomic orbital electron populations 1.20739 0.85067 1.04768 1.04518 1.23524 1.00824 0.90543 0.97036 1.22713 0.93655 1.00750 0.94426 1.22398 0.96147 0.97748 0.99469 1.21951 0.91900 0.92553 0.94437 1.59236 1.02166 1.14129 1.41238 1.22603 0.96933 0.98984 0.89772 1.21482 0.92275 0.92797 1.05447 1.21153 0.99303 0.97570 0.91349 1.22771 0.90336 0.98389 1.02489 1.22441 0.90751 0.99769 0.90346 1.48729 1.15715 1.49095 1.21663 1.21317 1.01458 0.90954 0.84155 1.19190 0.93561 0.92236 0.96261 1.21578 1.44480 0.95694 0.96571 0.91454 1.26076 0.94350 0.99209 1.00387 1.70136 1.45059 1.12217 1.29893 0.85296 0.77864 0.78445 0.78824 1.18045 1.20873 1.19621 1.21559 0.82368 0.78905 0.87913 1.90619 1.29128 1.64679 1.61678 1.21500 0.91948 1.00324 0.98958 1.21897 0.96923 0.87104 1.00310 1.73143 1.00500 1.28113 1.15742 1.72674 1.00903 1.27577 1.10374 0.88641 0.91520 0.87252 0.78254 0.79524 0.86938 0.94943 0.89480 0.85984 0.85713 0.86897 0.88159 0.91895 0.88972 0.93262 1.01617 0.98266 0.92705 0.92111 0.85947 0.97028 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.19 71.24 0.73 -0.54 16 2 C 0.03 0.67 6.87 42.71 0.29 0.96 16 3 C -0.09 -1.37 9.86 22.49 0.22 -1.14 16 4 C -0.13 -2.40 9.28 22.65 0.21 -2.19 16 5 C 0.23 6.71 6.47 133.11 0.86 7.57 16 6 N -0.45 -12.06 4.67 -701.06 -3.28 -15.34 16 7 C 0.04 1.01 5.03 86.36 0.43 1.45 16 8 C -0.08 -1.50 4.77 30.49 0.15 -1.35 16 9 C -0.09 -2.17 0.55 -52.82 -0.03 -2.20 16 10 C -0.10 -1.60 6.21 31.52 0.20 -1.41 16 11 C 0.09 2.16 7.36 86.86 0.64 2.80 16 12 N -0.62 -22.83 2.94 -818.08 -2.40 -25.24 16 13 C 0.14 6.37 5.87 86.38 0.51 6.88 16 14 C 0.03 1.45 5.30 29.85 0.16 1.61 16 15 C -0.54 -32.52 9.11 25.60 0.23 -32.28 16 16 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.93 -59.98 13.29 21.45 0.28 -59.70 16 19 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C 0.50 18.97 6.33 87.72 0.55 19.52 16 24 O -0.58 -27.89 13.85 -3.03 -0.04 -27.94 16 25 C -0.09 -2.27 4.77 30.49 0.15 -2.13 16 26 C 0.07 2.15 4.45 86.36 0.38 2.53 16 27 N -0.33 -12.12 9.88 -55.10 -0.54 -12.66 16 28 N -0.27 -9.22 11.41 -47.56 -0.54 -9.76 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.19 1.96 7.22 -2.92 -0.02 1.94 16 34 H 0.11 1.83 6.72 -2.39 -0.02 1.82 16 35 H 0.03 1.12 5.78 -2.39 -0.01 1.10 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.20 7.87 -2.39 -0.02 1.18 16 39 H 0.11 1.17 7.89 -2.39 -0.02 1.15 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.05 2.36 7.94 -2.39 -0.02 2.34 16 44 H -0.03 -2.32 8.14 -2.38 -0.02 -2.34 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 47 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.01 0.50 6.67 -2.39 -0.02 0.49 16 50 H 0.07 2.56 7.70 -2.39 -0.02 2.54 16 Total: -1.00 -93.06 394.32 2.58 -90.48 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.93 Total: 11.63 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.14 Total: 0.41 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.48 Total: -122.69 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.94 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -93.06 2.58 -90.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274754206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.464 kcal (2) G-P(sol) polarization free energy of solvation -93.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds