Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33818 * 126.08129 * 2 1 4 4 H 0.97004 * 124.98266 * 359.70981 * 3 2 1 5 5 N 1.39915 * 110.03151 * 179.73570 * 3 2 1 6 6 C 1.31930 * 109.05972 * 0.02562 * 5 3 2 7 7 C 1.41379 * 134.39497 * 180.02562 * 6 5 3 8 8 C 1.35193 * 119.93199 * 179.97438 * 7 6 5 9 9 C 1.41047 * 121.65189 * 0.02562 * 8 7 6 10 10 C 1.47512 * 119.39089 * 180.02562 * 9 8 7 11 11 O 1.21604 * 119.99615 * 139.52018 * 10 9 8 12 12 N 1.34772 * 120.00117 * 319.52249 * 10 9 8 13 13 C 1.46498 * 120.00202 * 5.13595 * 12 10 9 14 14 C 1.46507 * 119.99981 * 185.13198 * 12 10 9 15 15 C 1.53004 * 109.46799 * 89.99978 * 14 12 10 16 16 C 1.52997 * 109.47065 * 299.99849 * 15 14 12 17 17 C 1.52997 * 109.47260 * 59.99830 * 15 14 12 18 18 C 1.52992 * 109.47008 * 180.02562 * 15 14 12 19 19 N 1.46505 * 109.47335 * 179.97438 * 18 15 14 20 20 C 1.36934 * 120.00202 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99773 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99734 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00290 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47180 * 89.99713 * 24 22 20 26 26 H 1.48493 * 109.47174 * 209.99915 * 24 22 20 27 27 H 1.48498 * 109.47058 * 330.00347 * 24 22 20 28 28 C 1.38218 * 121.21460 * 359.97438 * 9 8 7 29 29 C 1.38535 * 126.08666 * 179.68771 * 2 1 3 30 30 H 1.09006 * 109.47187 * 90.02864 * 1 2 3 31 31 H 1.08999 * 109.47116 * 210.02041 * 1 2 3 32 32 H 1.08994 * 109.47381 * 330.02643 * 1 2 3 33 33 H 1.07996 * 120.03789 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.17247 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47354 * 85.72386 * 13 12 10 36 36 H 1.09002 * 109.46819 * 205.72760 * 13 12 10 37 37 H 1.09001 * 109.46769 * 325.72157 * 13 12 10 38 38 H 1.08998 * 109.47297 * 209.99780 * 14 12 10 39 39 H 1.09000 * 109.47200 * 330.00076 * 14 12 10 40 40 H 1.09006 * 109.47189 * 60.00432 * 16 15 14 41 41 H 1.09003 * 109.47292 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47314 * 300.00135 * 16 15 14 43 43 H 1.09008 * 109.47087 * 60.00232 * 17 15 14 44 44 H 1.09002 * 109.47552 * 179.97438 * 17 15 14 45 45 H 1.09002 * 109.47741 * 300.00150 * 17 15 14 46 46 H 1.08998 * 109.47067 * 299.99789 * 18 15 14 47 47 H 1.09000 * 109.47221 * 59.99957 * 18 15 14 48 48 H 0.96998 * 119.99658 * 0.02562 * 19 18 15 49 49 H 0.96998 * 120.00211 * 179.97438 * 23 22 20 50 50 H 1.07998 * 120.32568 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 -0.0040 5 7 3.6397 0.6947 0.0061 6 6 3.7089 -0.6228 0.0093 7 6 4.7697 -1.5575 0.0160 8 6 4.5012 -2.8825 0.0184 9 6 3.1775 -3.3695 0.0138 10 6 2.9419 -4.8257 0.0173 11 8 2.0508 -5.2957 0.6983 12 7 3.7141 -5.6351 -0.7343 13 6 4.8573 -5.0843 -1.4664 14 6 3.4103 -7.0658 -0.8192 15 6 2.4554 -7.3158 -1.9883 16 6 1.1605 -6.5318 -1.7657 17 6 3.1126 -6.8558 -3.2910 18 6 2.1376 -8.8098 -2.0766 19 7 1.2228 -9.0492 -3.1956 20 6 0.7962 -10.3209 -3.4712 21 1 1.1339 -11.1474 -2.8635 22 6 -0.0702 -10.5477 -4.5318 23 7 -0.4806 -11.7700 -4.7964 24 14 -0.6536 -9.1184 -5.5834 25 1 0.2857 -8.9218 -6.7167 26 1 -2.0103 -9.4130 -6.1104 27 1 -0.6999 -7.8840 -4.7592 28 6 2.0971 -2.5075 0.0072 29 6 2.3230 -1.1195 0.0061 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8902 0.5134 33 1 5.7934 -1.2134 0.0192 34 1 5.3209 -3.5856 0.0231 35 1 5.7279 -5.0541 -0.8112 36 1 5.0736 -5.7141 -2.3294 37 1 4.6209 -4.0750 -1.8033 38 1 4.3328 -7.6243 -0.9778 39 1 2.9420 -7.3935 0.1089 40 1 1.3865 -5.4673 -1.7026 41 1 0.4804 -6.7096 -2.5988 42 1 0.6923 -6.8596 -0.8376 43 1 4.0351 -7.4144 -3.4496 44 1 2.4325 -7.0343 -4.1240 45 1 3.3387 -5.7913 -3.2279 46 1 3.0599 -9.3687 -2.2349 47 1 1.6692 -9.1371 -1.1484 48 1 0.9198 -8.3070 -3.7416 49 1 -1.0863 -11.9285 -5.5373 50 1 1.0895 -2.8960 0.0042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275691000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = 79.108662 kcal Electronic energy + Delta-G solvation = -30457.413311 eV Core-core repulsion = 26487.027080 eV Total energy + Delta-G solvation = -3970.386230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81468 -40.36183 -37.78923 -36.83098 -35.18580 -33.55527 -33.11415 -31.26730 -30.70211 -30.49318 -28.07391 -27.68490 -26.77166 -26.02949 -25.55676 -24.32500 -22.72601 -21.87671 -20.46208 -19.74174 -18.61658 -18.24209 -17.56063 -17.54406 -16.47311 -16.18654 -15.80626 -15.59761 -14.89191 -14.59111 -14.38902 -14.33412 -14.09163 -13.90790 -13.62756 -13.53666 -13.36436 -13.23823 -12.96048 -12.85613 -12.75888 -12.50969 -12.35377 -12.21720 -11.95677 -11.64672 -11.32304 -11.26873 -11.21786 -10.85317 -10.75321 -10.69164 -10.54344 -10.37280 -10.32453 -10.01120 -9.72753 -9.51879 -9.17020 -8.83667 -8.57415 -7.93732 -7.14756 -5.71442 -3.05309 0.14322 1.20281 1.93849 2.18688 2.74467 3.00099 3.40018 3.42831 3.47692 3.56206 3.83435 3.98218 4.34139 4.44672 4.60070 4.63717 4.86049 4.89060 4.96438 5.03294 5.08914 5.12904 5.15630 5.20927 5.29614 5.31836 5.35869 5.56898 5.57324 5.67877 5.73115 5.74383 5.86379 5.95754 6.00413 6.05030 6.07585 6.13641 6.19372 6.30650 6.38725 6.44321 6.57739 6.59674 6.62866 6.70773 6.80763 6.88825 7.15066 7.37336 8.06266 8.19817 8.48234 9.28044 10.00629 10.21444 11.47394 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.002551 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.560471 B =10974.705780 C =11911.260970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.132 3.868 3 N -0.424 5.424 4 H 0.443 0.557 5 N -0.311 5.311 6 C 0.121 3.879 7 C -0.115 4.115 8 C -0.056 4.056 9 C -0.171 4.171 10 C 0.563 3.437 11 O -0.531 6.531 12 N -0.605 5.605 13 C 0.068 3.932 14 C 0.128 3.872 15 C -0.090 4.090 16 C -0.127 4.127 17 C -0.138 4.138 18 C 0.170 3.830 19 N -0.752 5.752 20 C -0.238 4.238 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.030 3.970 29 C -0.217 4.217 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 28.231 10.404 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 N -0.124 5.124 4 H 0.287 0.713 5 N -0.138 5.138 6 C -0.033 4.033 7 C -0.136 4.136 8 C -0.078 4.078 9 C -0.175 4.175 10 C 0.352 3.648 11 O -0.408 6.408 12 N -0.338 5.338 13 C -0.075 4.075 14 C 0.005 3.995 15 C -0.091 4.091 16 C -0.184 4.184 17 C -0.195 4.195 18 C 0.042 3.958 19 N -0.398 5.398 20 C -0.368 4.368 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.585 5.585 24 Si 0.712 3.288 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.009 3.991 29 C -0.227 4.227 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.195 0.805 49 H 0.068 0.932 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.941 28.847 10.783 32.361 hybrid contribution -1.033 0.794 -0.996 1.640 sum 8.907 29.641 9.787 32.461 Atomic orbital electron populations 1.20651 0.85859 1.04993 1.04462 1.21401 0.94539 0.87176 0.97683 1.46281 1.04815 1.08726 1.52582 0.71286 1.77662 0.92626 1.12258 1.31218 1.21031 0.94133 0.90866 0.97298 1.19727 0.96829 0.90684 1.06320 1.21014 0.95898 0.95355 0.95570 1.19432 0.93803 0.93019 1.11271 1.18163 0.81393 0.85944 0.79299 1.90812 1.32072 1.76480 1.41408 1.47639 1.29543 1.08912 1.47667 1.22250 0.87977 1.00390 0.96864 1.21551 0.99139 0.79193 0.99624 1.21161 0.95739 0.97399 0.94843 1.21749 0.96405 0.98148 1.02103 1.21904 1.00599 0.99784 0.97225 1.20562 0.93281 0.90513 0.91439 1.42734 1.55844 1.06431 1.34816 1.19081 1.21882 0.84665 1.11173 0.89233 1.24648 0.99902 0.95898 0.98854 1.69699 1.38135 1.18577 1.32060 0.86593 0.78321 0.82941 0.80982 1.21145 1.21762 1.20359 1.20550 0.98699 0.89411 0.90462 1.19199 0.92468 0.93541 1.17454 0.88987 0.88571 0.90223 0.84948 0.84356 0.92486 0.90214 0.90597 0.90316 0.89390 0.94106 0.92819 0.92096 0.92728 0.92384 0.93190 0.95535 0.95381 0.80492 0.93162 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.37 10.44 36.00 0.38 0.01 16 2 C 0.13 0.95 7.28 -81.62 -0.59 0.36 16 3 N -0.42 -2.97 7.17 33.88 0.24 -2.73 16 4 H 0.44 1.41 8.96 -182.73 -1.64 -0.22 16 5 N -0.31 -3.26 12.69 33.30 0.42 -2.84 16 6 C 0.12 1.31 7.49 -82.98 -0.62 0.69 16 7 C -0.11 -1.06 10.05 -39.47 -0.40 -1.45 16 8 C -0.06 -0.50 7.39 -39.60 -0.29 -0.80 16 9 C -0.17 -1.91 5.20 -105.06 -0.55 -2.46 16 10 C 0.56 7.47 5.53 -12.48 -0.07 7.41 16 11 O -0.53 -8.88 15.06 5.27 0.08 -8.80 16 12 N -0.61 -7.00 2.40 -182.81 -0.44 -7.43 16 13 C 0.07 0.55 7.64 59.85 0.46 1.01 16 14 C 0.13 1.67 4.59 -4.04 -0.02 1.65 16 15 C -0.09 -1.41 0.60 -154.51 -0.09 -1.50 16 16 C -0.13 -2.15 7.05 37.16 0.26 -1.89 16 17 C -0.14 -2.00 7.06 37.16 0.26 -1.74 16 18 C 0.17 3.33 5.15 -4.04 -0.02 3.31 16 19 N -0.75 -18.12 4.81 -59.91 -0.29 -18.41 16 20 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 24 Si 0.88 22.52 27.74 -169.99 -4.71 17.80 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 27 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 28 C 0.03 0.33 9.66 -38.69 -0.37 -0.05 16 29 C -0.22 -2.19 6.25 -105.24 -0.66 -2.85 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 0.95 5.30 -52.49 -0.28 0.67 16 35 H 0.06 0.34 6.86 -51.93 -0.36 -0.01 16 36 H 0.08 0.62 6.24 -51.93 -0.32 0.30 16 37 H 0.08 0.58 5.82 -51.93 -0.30 0.28 16 38 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 40 H 0.04 0.64 6.22 -51.93 -0.32 0.32 16 41 H 0.05 1.01 6.86 -51.93 -0.36 0.65 16 42 H 0.06 1.11 7.85 -51.93 -0.41 0.70 16 43 H 0.05 0.73 8.07 -51.92 -0.42 0.31 16 44 H 0.06 0.98 6.86 -51.93 -0.36 0.62 16 45 H 0.05 0.62 6.06 -51.93 -0.31 0.31 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.36 8.56 3.22 -40.82 -0.13 8.43 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 50 H 0.13 1.38 8.03 -52.49 -0.42 0.96 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -37.27 388.85 -9.20 -46.47 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.56 Total: 4.52 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.58 Total: -5.34 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.71 Total: -60.51 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.27 -9.20 -46.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275691000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.577 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds