Wall clock time and date at job start Wed Apr 1 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33818 * 126.08129 * 2 1 4 4 H 0.97004 * 124.98266 * 359.70981 * 3 2 1 5 5 N 1.39915 * 110.03151 * 179.73570 * 3 2 1 6 6 C 1.31930 * 109.05972 * 0.02562 * 5 3 2 7 7 C 1.41379 * 134.39497 * 180.02562 * 6 5 3 8 8 C 1.35193 * 119.93199 * 179.97438 * 7 6 5 9 9 C 1.41047 * 121.65189 * 0.02562 * 8 7 6 10 10 C 1.47512 * 119.39089 * 180.02562 * 9 8 7 11 11 O 1.21604 * 119.99615 * 139.52018 * 10 9 8 12 12 N 1.34772 * 120.00117 * 319.52249 * 10 9 8 13 13 C 1.46498 * 120.00202 * 5.13595 * 12 10 9 14 14 C 1.46507 * 119.99981 * 185.13198 * 12 10 9 15 15 C 1.53004 * 109.46799 * 89.99978 * 14 12 10 16 16 C 1.52997 * 109.47065 * 299.99849 * 15 14 12 17 17 C 1.52997 * 109.47260 * 59.99830 * 15 14 12 18 18 C 1.52992 * 109.47008 * 180.02562 * 15 14 12 19 19 N 1.46505 * 109.47335 * 179.97438 * 18 15 14 20 20 C 1.36934 * 120.00202 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99773 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99734 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00290 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47180 * 89.99713 * 24 22 20 26 26 H 1.48493 * 109.47174 * 209.99915 * 24 22 20 27 27 H 1.48498 * 109.47058 * 330.00347 * 24 22 20 28 28 C 1.38218 * 121.21460 * 359.97438 * 9 8 7 29 29 C 1.38535 * 126.08666 * 179.68771 * 2 1 3 30 30 H 1.09006 * 109.47187 * 90.02864 * 1 2 3 31 31 H 1.08999 * 109.47116 * 210.02041 * 1 2 3 32 32 H 1.08994 * 109.47381 * 330.02643 * 1 2 3 33 33 H 1.07996 * 120.03789 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.17247 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47354 * 85.72386 * 13 12 10 36 36 H 1.09002 * 109.46819 * 205.72760 * 13 12 10 37 37 H 1.09001 * 109.46769 * 325.72157 * 13 12 10 38 38 H 1.08998 * 109.47297 * 209.99780 * 14 12 10 39 39 H 1.09000 * 109.47200 * 330.00076 * 14 12 10 40 40 H 1.09006 * 109.47189 * 60.00432 * 16 15 14 41 41 H 1.09003 * 109.47292 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47314 * 300.00135 * 16 15 14 43 43 H 1.09008 * 109.47087 * 60.00232 * 17 15 14 44 44 H 1.09002 * 109.47552 * 179.97438 * 17 15 14 45 45 H 1.09002 * 109.47741 * 300.00150 * 17 15 14 46 46 H 1.08998 * 109.47067 * 299.99789 * 18 15 14 47 47 H 1.09000 * 109.47221 * 59.99957 * 18 15 14 48 48 H 0.96998 * 119.99658 * 0.02562 * 19 18 15 49 49 H 0.96998 * 120.00211 * 179.97438 * 23 22 20 50 50 H 1.07998 * 120.32568 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 -0.0040 5 7 3.6397 0.6947 0.0061 6 6 3.7089 -0.6228 0.0093 7 6 4.7697 -1.5575 0.0160 8 6 4.5012 -2.8825 0.0184 9 6 3.1775 -3.3695 0.0138 10 6 2.9419 -4.8257 0.0173 11 8 2.0508 -5.2957 0.6983 12 7 3.7141 -5.6351 -0.7343 13 6 4.8573 -5.0843 -1.4664 14 6 3.4103 -7.0658 -0.8192 15 6 2.4554 -7.3158 -1.9883 16 6 1.1605 -6.5318 -1.7657 17 6 3.1126 -6.8558 -3.2910 18 6 2.1376 -8.8098 -2.0766 19 7 1.2228 -9.0492 -3.1956 20 6 0.7962 -10.3209 -3.4712 21 1 1.1339 -11.1474 -2.8635 22 6 -0.0702 -10.5477 -4.5318 23 7 -0.4806 -11.7700 -4.7964 24 14 -0.6536 -9.1184 -5.5834 25 1 0.2857 -8.9218 -6.7167 26 1 -2.0103 -9.4130 -6.1104 27 1 -0.6999 -7.8840 -4.7592 28 6 2.0971 -2.5075 0.0072 29 6 2.3230 -1.1195 0.0061 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8902 0.5134 33 1 5.7934 -1.2134 0.0192 34 1 5.3209 -3.5856 0.0231 35 1 5.7279 -5.0541 -0.8112 36 1 5.0736 -5.7141 -2.3294 37 1 4.6209 -4.0750 -1.8033 38 1 4.3328 -7.6243 -0.9778 39 1 2.9420 -7.3935 0.1089 40 1 1.3865 -5.4673 -1.7026 41 1 0.4804 -6.7096 -2.5988 42 1 0.6923 -6.8596 -0.8376 43 1 4.0351 -7.4144 -3.4496 44 1 2.4325 -7.0343 -4.1240 45 1 3.3387 -5.7913 -3.2279 46 1 3.0599 -9.3687 -2.2349 47 1 1.6692 -9.1371 -1.1484 48 1 0.9198 -8.3070 -3.7416 49 1 -1.0863 -11.9285 -5.5373 50 1 1.0895 -2.8960 0.0042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275691000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:35 Heat of formation + Delta-G solvation = 54.040345 kcal Electronic energy + Delta-G solvation = -30458.500354 eV Core-core repulsion = 26487.027080 eV Total energy + Delta-G solvation = -3971.473274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.47063 -41.33583 -38.98176 -37.73245 -36.48107 -34.87002 -34.13557 -32.79194 -31.80894 -31.24914 -28.95971 -28.49550 -27.93502 -27.51099 -26.62235 -25.17932 -24.05507 -23.15715 -21.14648 -20.74488 -20.19107 -19.29365 -18.91976 -18.27939 -17.28783 -17.13400 -16.89485 -16.47372 -16.22571 -15.89399 -15.62243 -15.35823 -15.10263 -14.99971 -14.85849 -14.48971 -14.27578 -14.15399 -13.99240 -13.85655 -13.79389 -13.62695 -13.28821 -13.20666 -13.05471 -12.88578 -12.68128 -12.62486 -12.45916 -12.25201 -12.20426 -12.05082 -11.71815 -11.64815 -11.51153 -11.38990 -11.20934 -10.97189 -10.78831 -9.84337 -9.55125 -9.26181 -8.63650 -8.01836 -5.33617 -0.51396 0.46196 1.26654 1.35139 1.38528 1.45703 1.68242 1.81922 2.11615 2.47846 2.80303 3.18341 3.29334 3.46816 3.61821 3.68652 3.88784 3.93072 3.95007 3.98235 4.07509 4.24280 4.33368 4.45733 4.50805 4.52656 4.59376 4.64202 4.69641 4.71129 4.82277 4.85003 4.92038 4.95479 5.00324 5.03343 5.09890 5.13482 5.17015 5.18785 5.30893 5.36025 5.40242 5.42499 5.51791 5.60634 5.74812 5.77406 6.14133 6.22799 6.46505 6.49914 7.09291 7.23500 7.86559 8.05946 9.20116 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.002551 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.560471 B =10974.705780 C =11911.260970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.151 3.849 3 N -0.412 5.412 4 H 0.458 0.542 5 N -0.342 5.342 6 C 0.104 3.896 7 C -0.121 4.121 8 C -0.049 4.049 9 C -0.187 4.187 10 C 0.561 3.439 11 O -0.576 6.576 12 N -0.601 5.601 13 C 0.059 3.941 14 C 0.134 3.866 15 C -0.081 4.081 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.166 3.834 19 N -0.753 5.753 20 C -0.229 4.229 21 H 0.057 0.943 22 C -0.064 4.064 23 N -0.984 5.984 24 Si 0.950 3.050 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.258 1.258 28 C 0.027 3.973 29 C -0.246 4.246 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.015 0.985 48 H 0.365 0.635 49 H 0.257 0.743 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.048 31.494 9.924 34.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.010 3.990 3 N -0.114 5.114 4 H 0.307 0.693 5 N -0.169 5.169 6 C -0.050 4.050 7 C -0.141 4.141 8 C -0.071 4.071 9 C -0.192 4.192 10 C 0.351 3.649 11 O -0.457 6.457 12 N -0.331 5.331 13 C -0.082 4.082 14 C 0.011 3.989 15 C -0.082 4.082 16 C -0.175 4.175 17 C -0.191 4.191 18 C 0.039 3.961 19 N -0.399 5.399 20 C -0.360 4.360 21 H 0.075 0.925 22 C -0.256 4.256 23 N -0.635 5.635 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.183 1.183 28 C 0.006 3.994 29 C -0.256 4.256 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.200 0.800 49 H 0.066 0.934 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.345 32.179 10.313 35.645 hybrid contribution -1.477 -0.184 -0.745 1.665 sum 9.868 31.995 9.568 34.822 Atomic orbital electron populations 1.20834 0.83141 1.06298 1.05671 1.21913 0.95955 0.86332 0.94814 1.46306 1.03928 1.09676 1.51470 0.69345 1.77583 0.94430 1.12281 1.32646 1.21398 0.94944 0.91259 0.97399 1.19990 0.97492 0.90553 1.06115 1.21140 0.95426 0.95694 0.94886 1.19378 0.95025 0.91684 1.13101 1.18527 0.80764 0.86856 0.78754 1.90789 1.34132 1.77344 1.43413 1.47675 1.30101 1.08005 1.47358 1.22538 0.87420 1.00730 0.97506 1.21377 0.99455 0.80732 0.97380 1.21058 0.95933 0.94135 0.97073 1.21641 0.96642 0.99086 1.00086 1.21880 1.00477 1.01610 0.95084 1.20724 0.92409 0.93729 0.89207 1.42727 1.56433 1.04744 1.35993 1.19066 1.21058 0.85755 1.10149 0.92485 1.25457 1.00661 0.98742 1.00713 1.69879 1.39429 1.21143 1.33089 0.85482 0.77476 0.79977 0.79327 1.19930 1.22141 1.18313 1.20602 0.98574 0.90002 0.90266 1.19419 0.93084 0.93845 1.19242 0.87603 0.88748 0.87450 0.83109 0.82076 0.89700 0.89261 0.89892 0.87573 0.91324 0.92873 0.94763 0.94110 0.91116 0.94645 0.90757 0.94612 0.96728 0.80014 0.93375 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.44 71.23 0.74 0.27 16 2 C 0.15 1.91 7.28 42.33 0.31 2.22 16 3 N -0.41 -4.99 7.17 -46.73 -0.34 -5.33 16 4 H 0.46 1.88 8.96 -213.43 -1.91 -0.03 16 5 N -0.34 -6.74 12.69 -48.55 -0.62 -7.35 16 6 C 0.10 2.12 7.49 42.27 0.32 2.44 16 7 C -0.12 -2.01 10.05 22.34 0.22 -1.78 16 8 C -0.05 -0.79 7.39 22.26 0.16 -0.62 16 9 C -0.19 -3.99 5.20 -20.15 -0.10 -4.10 16 10 C 0.56 14.39 5.53 86.69 0.48 14.87 16 11 O -0.58 -19.57 15.06 -4.04 -0.06 -19.63 16 12 N -0.60 -12.58 2.40 -850.55 -2.04 -14.62 16 13 C 0.06 0.74 7.64 127.77 0.98 1.72 16 14 C 0.13 3.29 4.59 86.38 0.40 3.68 16 15 C -0.08 -2.43 0.60 -52.18 -0.03 -2.46 16 16 C -0.12 -3.95 7.05 71.98 0.51 -3.44 16 17 C -0.13 -3.51 7.06 71.98 0.51 -3.00 16 18 C 0.17 6.47 5.15 86.38 0.44 6.91 16 19 N -0.75 -36.19 4.81 -343.45 -1.65 -37.84 16 20 C -0.23 -13.44 10.47 84.04 0.88 -12.56 16 21 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 22 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.98 -64.35 13.97 21.65 0.30 -64.05 16 24 Si 0.95 46.65 27.74 68.60 1.90 48.55 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 27 H -0.26 -11.71 6.52 99.48 0.65 -11.06 16 28 C 0.03 0.57 9.66 22.85 0.22 0.79 16 29 C -0.25 -4.71 6.25 -20.26 -0.13 -4.83 16 30 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.16 1.67 5.30 -2.91 -0.02 1.66 16 35 H 0.08 0.64 6.86 -2.39 -0.02 0.62 16 36 H 0.09 0.99 6.24 -2.39 -0.01 0.97 16 37 H 0.08 0.98 5.82 -2.39 -0.01 0.97 16 38 H 0.11 2.04 8.07 -2.39 -0.02 2.02 16 39 H 0.07 1.99 7.36 -2.39 -0.02 1.97 16 40 H 0.05 1.64 6.22 -2.38 -0.01 1.62 16 41 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 42 H 0.04 1.51 7.85 -2.39 -0.02 1.50 16 43 H 0.07 1.64 8.07 -2.38 -0.02 1.63 16 44 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 45 H 0.07 1.59 6.06 -2.39 -0.01 1.58 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.37 16.97 3.22 -92.71 -0.30 16.67 16 49 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 50 H 0.13 2.71 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -83.80 388.85 2.59 -81.21 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -1.29 Total: 22.39 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.38 Total: -3.33 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -4.34 Total: -129.19 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.06 Total: -19.63 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Total: -83.80 2.59 -81.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275691000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.251 kcal (2) G-P(sol) polarization free energy of solvation -83.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds