Wall clock time and date at job start Wed Apr 1 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48493 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46860 * 300.00096 * 3 2 1 6 6 H 1.48498 * 109.46950 * 59.99778 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 11 11 N 1.47070 * 87.97873 * 220.34038 * 10 9 7 12 12 C 1.34777 * 136.05212 * 207.07785 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.73146 * 12 11 10 15 15 H 1.09005 * 107.87675 * 303.73017 * 14 12 11 16 16 C 1.50953 * 108.02926 * 60.27751 * 14 12 11 17 17 C 1.53680 * 110.90469 * 193.98046 * 16 14 12 18 18 N 1.47692 * 106.97031 * 280.46785 * 17 16 14 19 19 N 1.39501 * 127.45530 * 244.42206 * 18 17 16 20 20 C 1.31179 * 107.86263 * 179.97438 * 19 18 17 21 21 C 1.40186 * 108.23446 * 0.02562 * 20 19 18 22 22 C 1.34440 * 124.30101 * 64.42283 * 18 17 16 23 23 C 1.51868 * 124.48205 * 0.09670 * 22 18 17 24 24 N 1.44792 * 108.02678 * 187.22282 * 14 12 11 25 25 C 1.46904 * 110.99811 * 289.89153 * 24 14 12 26 26 C 1.53004 * 109.46975 * 169.99887 * 25 24 14 27 27 C 1.52996 * 117.50003 * 243.62155 * 26 25 24 28 28 C 1.52994 * 117.49678 * 175.00009 * 26 25 24 29 29 C 1.47062 * 87.88674 * 27.34302 * 11 10 9 30 30 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 31 31 H 1.09003 * 113.27945 * 313.06201 * 9 7 2 32 32 H 1.08996 * 113.46716 * 105.56433 * 10 9 7 33 33 H 1.08994 * 113.46600 * 335.12146 * 10 9 7 34 34 H 1.09001 * 109.19109 * 314.34699 * 16 14 12 35 35 H 1.09004 * 109.19023 * 73.61521 * 16 14 12 36 36 H 1.09006 * 109.95317 * 39.83056 * 17 16 14 37 37 H 1.08999 * 109.95517 * 161.09946 * 17 16 14 38 38 H 1.08003 * 125.88477 * 180.02562 * 20 19 18 39 39 H 1.08002 * 126.20254 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.94429 * 54.50422 * 23 22 18 41 41 H 1.09002 * 109.93787 * 175.66618 * 23 22 18 42 42 H 1.09000 * 109.46951 * 289.99351 * 25 24 14 43 43 H 1.08992 * 109.47096 * 50.00355 * 25 24 14 44 44 H 1.09001 * 115.55169 * 29.33052 * 26 25 24 45 45 H 1.09007 * 117.49560 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.50282 * 145.01852 * 27 26 25 47 47 H 1.09009 * 117.50180 * 214.97841 * 28 26 25 48 48 H 1.08996 * 117.50463 * 359.97438 * 28 26 25 49 49 H 1.08998 * 113.46736 * 87.43474 * 29 11 10 50 50 H 1.08998 * 113.46422 * 217.87103 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.1487 -3.7443 0.0018 11 7 1.2104 -4.3578 -0.9501 12 6 0.8361 -5.6119 -1.2721 13 8 1.3303 -6.5587 -0.6974 14 6 -0.2013 -5.8374 -2.3416 15 1 -1.0982 -5.2859 -2.0594 16 6 0.3214 -5.2512 -3.6306 17 6 -0.8015 -5.1295 -4.6728 18 7 -0.9921 -6.4713 -5.2597 19 7 -0.7717 -6.8580 -6.5818 20 6 -1.0618 -8.1335 -6.6816 21 6 -1.4752 -8.5892 -5.4220 22 6 -1.4207 -7.5447 -4.5731 23 6 -1.7735 -7.5357 -3.0960 24 7 -0.5298 -7.2475 -2.3570 25 6 0.5894 -8.0430 -2.8792 26 6 0.3087 -9.5297 -2.6508 27 6 1.2550 -10.2927 -1.7219 28 6 1.3057 -10.5342 -3.2318 29 6 0.8652 -3.0011 -1.4006 30 1 -0.4849 0.8401 0.0004 31 1 0.4432 -2.5302 0.7318 32 1 2.1842 -4.2528 0.9652 33 1 3.1386 -3.5660 -0.4181 34 1 0.7352 -4.2624 -3.4327 35 1 1.1075 -5.8955 -4.0245 36 1 -1.7221 -4.8000 -4.1909 37 1 -0.5130 -4.4212 -5.4495 38 1 -0.9938 -8.7298 -7.5795 39 1 -1.7811 -9.5954 -5.1765 40 1 -2.5137 -6.7611 -2.8951 41 1 -2.1653 -8.5093 -2.8015 42 1 0.7021 -7.8545 -3.9468 43 1 1.5068 -7.7629 -2.3617 44 1 -0.7437 -9.8133 -2.6411 45 1 2.0779 -9.7357 -1.2737 46 1 0.8253 -11.0785 -1.1006 47 1 0.9094 -11.4790 -3.6040 48 1 2.1614 -10.1361 -3.7771 49 1 1.5169 -2.6270 -2.1902 50 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277244264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:16 Heat of formation + Delta-G solvation = 132.381135 kcal Electronic energy + Delta-G solvation = -31627.408260 eV Core-core repulsion = 27659.332097 eV Total energy + Delta-G solvation = -3968.076163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92349 -39.98177 -38.45739 -37.05874 -36.32731 -34.13081 -32.76749 -31.87503 -30.09097 -28.99425 -27.57030 -26.89700 -25.15158 -25.09689 -24.20105 -22.30151 -22.06159 -21.31659 -20.51867 -20.00490 -19.37725 -18.32868 -17.37013 -16.87602 -16.51848 -16.18935 -15.60261 -15.37777 -15.05785 -14.76196 -14.61843 -14.53609 -14.03332 -14.01201 -13.88864 -13.45870 -13.27472 -12.90270 -12.76588 -12.37353 -12.32324 -12.18964 -11.93289 -11.78263 -11.61565 -11.46124 -11.36685 -11.24022 -11.14951 -11.01338 -10.84233 -10.72982 -10.40870 -10.25830 -9.95402 -9.60566 -9.34508 -9.28140 -9.03704 -8.67851 -8.62150 -8.37092 -7.93059 -6.25547 -4.31075 1.78233 2.35791 2.73300 3.05718 3.17814 3.25446 3.28247 3.32378 3.73828 4.02499 4.27172 4.35001 4.38641 4.46133 4.63917 4.79320 4.85759 4.93670 4.99817 5.00256 5.04454 5.13202 5.19775 5.29704 5.32145 5.46613 5.55340 5.56710 5.63656 5.65340 5.69375 5.75110 5.87810 5.95286 5.97909 6.02737 6.09749 6.16491 6.18746 6.34137 6.37714 6.42634 6.54517 6.57198 6.70014 6.84286 6.89309 7.00083 7.48528 7.66186 7.72534 8.10536 8.45061 8.71191 8.73705 9.36388 10.84044 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.003054 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.635171 B = 9166.015960 C =10428.845653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.101 3.899 11 N -0.645 5.645 12 C 0.537 3.463 13 O -0.541 6.541 14 C 0.073 3.927 15 H 0.102 0.898 16 C -0.169 4.169 17 C 0.134 3.866 18 N -0.364 5.364 19 N -0.296 5.296 20 C 0.037 3.963 21 C -0.260 4.260 22 C 0.054 3.946 23 C 0.117 3.883 24 N -0.501 5.501 25 C 0.082 3.918 26 C -0.132 4.132 27 C -0.171 4.171 28 C -0.183 4.183 29 C 0.095 3.905 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.179 0.821 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -15.235 -9.643 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.021 4.021 11 N -0.379 5.379 12 C 0.325 3.675 13 O -0.419 6.419 14 C -0.039 4.039 15 H 0.120 0.880 16 C -0.209 4.209 17 C 0.014 3.986 18 N -0.148 5.148 19 N -0.117 5.117 20 C -0.148 4.148 21 C -0.290 4.290 22 C -0.075 4.075 23 C -0.012 4.012 24 N -0.222 5.222 25 C -0.045 4.045 26 C -0.151 4.151 27 C -0.208 4.208 28 C -0.220 4.220 29 C -0.028 4.028 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.196 0.804 39 H 0.162 0.838 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.738 -14.762 -9.461 17.928 hybrid contribution 0.195 0.471 -0.643 0.820 sum -3.543 -14.292 -10.104 17.858 Atomic orbital electron populations 1.69954 1.06051 1.27067 1.49126 1.25017 0.94861 0.99393 0.94182 0.86497 0.80235 0.83330 0.77759 1.19555 1.20896 1.20831 1.20954 0.93066 0.89559 1.51997 0.91812 1.20381 0.94800 0.91138 0.91964 1.23326 0.94228 0.93087 0.91421 1.50016 1.42901 1.04664 1.40334 1.19793 0.82920 0.81329 0.83477 1.90619 1.56976 1.40435 1.53826 1.20791 0.99545 0.89865 0.93733 0.87981 1.22380 0.98830 1.04565 0.95145 1.22277 0.99618 0.80446 0.96306 1.48925 1.50727 1.08770 1.06380 1.77365 1.24120 1.14434 0.95811 1.23952 0.99653 0.92420 0.98793 1.21074 1.15137 0.99877 0.92876 1.22008 1.00126 0.88570 0.96806 1.21529 0.92755 1.04304 0.82644 1.61312 1.03520 1.04030 1.53349 1.21888 0.94492 0.90731 0.97391 1.22061 0.96438 0.92153 1.04436 1.22970 1.02659 1.02900 0.92252 1.22909 1.01951 1.00378 0.96808 1.23677 0.99591 0.77143 1.02343 0.92662 0.91254 0.92434 0.91015 0.87540 0.90259 0.88742 0.87463 0.80421 0.83818 0.89151 0.87309 0.94282 0.88716 0.87908 0.88620 0.89231 0.89073 0.89392 0.90803 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 13.26 55.43 0.74 -22.35 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -12.59 8.82 -34.44 -0.30 -12.89 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.04 0.80 3.80 -91.12 -0.35 0.46 16 10 C 0.10 2.00 8.18 -8.50 -0.07 1.93 16 11 N -0.64 -11.98 3.56 -185.06 -0.66 -12.64 16 12 C 0.54 9.65 7.03 -10.98 -0.08 9.57 16 13 O -0.54 -11.23 15.00 5.55 0.08 -11.15 16 14 C 0.07 1.02 1.79 -71.02 -0.13 0.90 16 15 H 0.10 1.35 7.56 -51.93 -0.39 0.95 16 16 C -0.17 -2.12 4.68 -27.41 -0.13 -2.24 16 17 C 0.13 1.47 6.81 -3.04 -0.02 1.45 16 18 N -0.36 -4.52 3.52 -55.82 -0.20 -4.72 16 19 N -0.30 -4.00 12.64 30.75 0.39 -3.61 16 20 C 0.04 0.42 12.04 -17.10 -0.21 0.21 16 21 C -0.26 -2.77 10.71 -40.10 -0.43 -3.20 16 22 C 0.05 0.62 3.82 -82.12 -0.31 0.31 16 23 C 0.12 1.23 5.60 -4.06 -0.02 1.20 16 24 N -0.50 -6.62 4.21 -231.14 -0.97 -7.60 16 25 C 0.08 1.12 3.61 -3.82 -0.01 1.10 16 26 C -0.13 -1.55 5.61 -90.62 -0.51 -2.06 16 27 C -0.17 -2.01 10.18 -26.74 -0.27 -2.29 16 28 C -0.18 -1.93 10.25 -26.74 -0.27 -2.20 16 29 C 0.09 1.80 6.22 -8.37 -0.05 1.74 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.11 1.38 5.72 -51.93 -0.30 1.08 16 35 H 0.08 1.11 6.50 -51.93 -0.34 0.78 16 36 H 0.09 0.89 7.88 -51.93 -0.41 0.49 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.09 0.85 7.77 -51.93 -0.40 0.45 16 41 H 0.11 0.98 6.83 -51.93 -0.35 0.62 16 42 H 0.04 0.56 5.23 -51.93 -0.27 0.29 16 43 H 0.09 1.58 5.54 -51.93 -0.29 1.29 16 44 H 0.10 1.10 6.50 -51.93 -0.34 0.77 16 45 H 0.10 1.28 8.03 -51.92 -0.42 0.87 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.07 1.37 7.90 -51.93 -0.41 0.96 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -28.93 390.40 -10.71 -39.64 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.69 Total: 6.53 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.26 Total: -4.38 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.70 Total: -50.92 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.93 -10.71 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277244264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.017 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds