Wall clock time and date at job start Wed Apr 1 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48493 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46860 * 300.00096 * 3 2 1 6 6 H 1.48498 * 109.46950 * 59.99778 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 11 11 N 1.47070 * 87.97873 * 220.34038 * 10 9 7 12 12 C 1.34777 * 136.05212 * 207.07785 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.73146 * 12 11 10 15 15 H 1.09005 * 107.87675 * 303.73017 * 14 12 11 16 16 C 1.50953 * 108.02926 * 60.27751 * 14 12 11 17 17 C 1.53680 * 110.90469 * 193.98046 * 16 14 12 18 18 N 1.47692 * 106.97031 * 280.46785 * 17 16 14 19 19 N 1.39501 * 127.45530 * 244.42206 * 18 17 16 20 20 C 1.31179 * 107.86263 * 179.97438 * 19 18 17 21 21 C 1.40186 * 108.23446 * 0.02562 * 20 19 18 22 22 C 1.34440 * 124.30101 * 64.42283 * 18 17 16 23 23 C 1.51868 * 124.48205 * 0.09670 * 22 18 17 24 24 N 1.44792 * 108.02678 * 187.22282 * 14 12 11 25 25 C 1.46904 * 110.99811 * 289.89153 * 24 14 12 26 26 C 1.53004 * 109.46975 * 169.99887 * 25 24 14 27 27 C 1.52996 * 117.50003 * 243.62155 * 26 25 24 28 28 C 1.52994 * 117.49678 * 175.00009 * 26 25 24 29 29 C 1.47062 * 87.88674 * 27.34302 * 11 10 9 30 30 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 31 31 H 1.09003 * 113.27945 * 313.06201 * 9 7 2 32 32 H 1.08996 * 113.46716 * 105.56433 * 10 9 7 33 33 H 1.08994 * 113.46600 * 335.12146 * 10 9 7 34 34 H 1.09001 * 109.19109 * 314.34699 * 16 14 12 35 35 H 1.09004 * 109.19023 * 73.61521 * 16 14 12 36 36 H 1.09006 * 109.95317 * 39.83056 * 17 16 14 37 37 H 1.08999 * 109.95517 * 161.09946 * 17 16 14 38 38 H 1.08003 * 125.88477 * 180.02562 * 20 19 18 39 39 H 1.08002 * 126.20254 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.94429 * 54.50422 * 23 22 18 41 41 H 1.09002 * 109.93787 * 175.66618 * 23 22 18 42 42 H 1.09000 * 109.46951 * 289.99351 * 25 24 14 43 43 H 1.08992 * 109.47096 * 50.00355 * 25 24 14 44 44 H 1.09001 * 115.55169 * 29.33052 * 26 25 24 45 45 H 1.09007 * 117.49560 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.50282 * 145.01852 * 27 26 25 47 47 H 1.09009 * 117.50180 * 214.97841 * 28 26 25 48 48 H 1.08996 * 117.50463 * 359.97438 * 28 26 25 49 49 H 1.08998 * 113.46736 * 87.43474 * 29 11 10 50 50 H 1.08998 * 113.46422 * 217.87103 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.1487 -3.7443 0.0018 11 7 1.2104 -4.3578 -0.9501 12 6 0.8361 -5.6119 -1.2721 13 8 1.3303 -6.5587 -0.6974 14 6 -0.2013 -5.8374 -2.3416 15 1 -1.0982 -5.2859 -2.0594 16 6 0.3214 -5.2512 -3.6306 17 6 -0.8015 -5.1295 -4.6728 18 7 -0.9921 -6.4713 -5.2597 19 7 -0.7717 -6.8580 -6.5818 20 6 -1.0618 -8.1335 -6.6816 21 6 -1.4752 -8.5892 -5.4220 22 6 -1.4207 -7.5447 -4.5731 23 6 -1.7735 -7.5357 -3.0960 24 7 -0.5298 -7.2475 -2.3570 25 6 0.5894 -8.0430 -2.8792 26 6 0.3087 -9.5297 -2.6508 27 6 1.2550 -10.2927 -1.7219 28 6 1.3057 -10.5342 -3.2318 29 6 0.8652 -3.0011 -1.4006 30 1 -0.4849 0.8401 0.0004 31 1 0.4432 -2.5302 0.7318 32 1 2.1842 -4.2528 0.9652 33 1 3.1386 -3.5660 -0.4181 34 1 0.7352 -4.2624 -3.4327 35 1 1.1075 -5.8955 -4.0245 36 1 -1.7221 -4.8000 -4.1909 37 1 -0.5130 -4.4212 -5.4495 38 1 -0.9938 -8.7298 -7.5795 39 1 -1.7811 -9.5954 -5.1765 40 1 -2.5137 -6.7611 -2.8951 41 1 -2.1653 -8.5093 -2.8015 42 1 0.7021 -7.8545 -3.9468 43 1 1.5068 -7.7629 -2.3617 44 1 -0.7437 -9.8133 -2.6411 45 1 2.0779 -9.7357 -1.2737 46 1 0.8253 -11.0785 -1.1006 47 1 0.9094 -11.4790 -3.6040 48 1 2.1614 -10.1361 -3.7771 49 1 1.5169 -2.6270 -2.1902 50 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277244264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:15 Heat of formation + Delta-G solvation = 115.522529 kcal Electronic energy + Delta-G solvation = -31628.139304 eV Core-core repulsion = 27659.332097 eV Total energy + Delta-G solvation = -3968.807207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.83853 -41.33397 -39.72168 -38.32436 -37.46765 -35.08237 -34.60000 -32.90332 -31.24920 -30.30705 -28.61592 -27.98754 -26.77917 -26.65616 -25.19746 -23.30552 -23.17606 -22.15691 -21.82545 -21.17193 -20.30950 -19.74239 -18.72245 -18.34249 -17.76790 -17.35217 -16.80248 -16.48642 -16.37829 -16.19250 -15.99822 -15.45239 -15.24780 -15.05472 -14.81384 -14.69146 -14.38441 -14.13867 -13.94475 -13.78605 -13.44144 -13.30057 -13.19766 -13.12850 -12.85529 -12.79888 -12.64663 -12.54377 -12.41138 -12.35254 -12.16478 -12.11630 -11.60292 -11.32169 -11.15173 -11.03379 -10.88740 -10.63466 -10.46635 -10.22493 -9.55643 -9.49375 -9.40079 -8.15961 -6.25991 0.92190 1.45649 1.50453 1.52478 1.59600 1.63148 1.84243 1.99181 2.46361 2.71547 3.06780 3.14481 3.26330 3.42866 3.53026 3.67825 3.81519 3.92041 3.96381 4.06364 4.12089 4.19338 4.25768 4.27683 4.35483 4.42375 4.44116 4.52151 4.54898 4.60994 4.70629 4.72973 4.75357 4.79935 4.81874 4.82710 4.83376 4.87374 4.97652 5.06585 5.09056 5.22980 5.28684 5.37456 5.62034 5.78098 5.83413 5.87954 5.91405 6.06106 6.25141 6.81420 6.82354 6.94421 7.22260 7.44007 8.93790 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.003054 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.635171 B = 9166.015960 C =10428.845653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.024 3.976 10 C 0.105 3.895 11 N -0.644 5.644 12 C 0.531 3.469 13 O -0.571 6.571 14 C 0.085 3.915 15 H 0.116 0.884 16 C -0.156 4.156 17 C 0.136 3.864 18 N -0.374 5.374 19 N -0.333 5.333 20 C 0.035 3.965 21 C -0.259 4.259 22 C 0.048 3.952 23 C 0.119 3.881 24 N -0.512 5.512 25 C 0.095 3.905 26 C -0.136 4.136 27 C -0.182 4.182 28 C -0.166 4.166 29 C 0.114 3.886 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.204 0.796 39 H 0.166 0.834 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.032 0.968 43 H 0.058 0.942 44 H 0.121 0.879 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -16.286 -11.019 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.005 3.995 10 C -0.017 4.017 11 N -0.378 5.378 12 C 0.321 3.679 13 O -0.451 6.451 14 C -0.028 4.028 15 H 0.133 0.867 16 C -0.196 4.196 17 C 0.016 3.984 18 N -0.158 5.158 19 N -0.155 5.155 20 C -0.150 4.150 21 C -0.288 4.288 22 C -0.081 4.081 23 C -0.009 4.009 24 N -0.233 5.233 25 C -0.032 4.032 26 C -0.154 4.154 27 C -0.219 4.219 28 C -0.204 4.204 29 C -0.008 4.008 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.221 0.779 39 H 0.184 0.816 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.139 0.861 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.134 0.866 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.819 -15.822 -10.849 19.780 hybrid contribution 0.570 0.716 -0.166 0.931 sum -4.249 -15.106 -11.015 19.172 Atomic orbital electron populations 1.70043 1.07188 1.27705 1.50336 1.25668 0.95531 1.02191 0.94121 0.85581 0.79219 0.79802 0.77502 1.19109 1.20529 1.21105 1.21224 0.93218 0.90616 1.51471 0.91898 1.20257 0.94554 0.91395 0.93338 1.23188 0.94493 0.92248 0.91801 1.50000 1.42700 1.05051 1.40097 1.20606 0.83131 0.80349 0.83788 1.90610 1.58162 1.41161 1.55131 1.20729 0.98377 0.90966 0.92720 0.86675 1.22220 0.98979 1.03567 0.94850 1.22311 0.99658 0.80506 0.95952 1.49005 1.51213 1.09273 1.06333 1.77326 1.25632 1.15836 0.96672 1.24481 0.98483 0.91973 1.00075 1.21386 1.14381 1.00645 0.92418 1.22213 1.00109 0.88638 0.97140 1.21685 0.91433 1.05968 0.81823 1.61290 1.04393 1.03288 1.54319 1.21633 0.93307 0.92115 0.96157 1.22097 0.97501 0.91014 1.04831 1.22949 1.02254 1.03336 0.93386 1.22956 1.01118 1.00824 0.95483 1.23383 1.00162 0.76793 1.00445 0.92659 0.94130 0.92957 0.90287 0.88014 0.92113 0.86834 0.86879 0.77901 0.81624 0.87700 0.85273 0.95045 0.92412 0.86125 0.91238 0.87751 0.86585 0.90207 0.90046 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.95 13.26 21.45 0.28 -47.66 16 2 C 0.03 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.53 -25.77 8.82 25.60 0.23 -25.54 16 8 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.02 1.07 3.80 -11.12 -0.04 1.03 16 10 C 0.11 4.23 8.18 83.18 0.68 4.91 16 11 N -0.64 -24.11 3.56 -857.80 -3.05 -27.16 16 12 C 0.53 19.22 7.03 87.66 0.62 19.84 16 13 O -0.57 -24.28 15.00 -3.04 -0.05 -24.33 16 14 C 0.08 2.30 1.79 43.90 0.08 2.37 16 15 H 0.12 2.83 7.56 -2.38 -0.02 2.82 16 16 C -0.16 -3.80 4.68 30.16 0.14 -3.66 16 17 C 0.14 2.78 6.81 86.38 0.59 3.37 16 18 N -0.37 -8.67 3.52 -330.51 -1.16 -9.84 16 19 N -0.33 -8.51 12.64 -56.63 -0.72 -9.23 16 20 C 0.03 0.70 12.04 85.26 1.03 1.73 16 21 C -0.26 -4.77 10.71 21.93 0.23 -4.54 16 22 C 0.05 0.98 3.82 41.72 0.16 1.14 16 23 C 0.12 2.18 5.60 85.81 0.48 2.66 16 24 N -0.51 -12.89 4.21 -885.20 -3.73 -16.62 16 25 C 0.10 2.55 3.61 86.30 0.31 2.86 16 26 C -0.14 -2.98 5.61 -10.80 -0.06 -3.04 16 27 C -0.18 -4.17 10.18 30.59 0.31 -3.86 16 28 C -0.17 -3.20 10.25 30.59 0.31 -2.89 16 29 C 0.11 4.31 6.22 83.27 0.52 4.83 16 30 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 31 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 34 H 0.10 2.57 5.72 -2.39 -0.01 2.55 16 35 H 0.06 1.72 6.50 -2.38 -0.02 1.70 16 36 H 0.11 1.88 7.88 -2.38 -0.02 1.86 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.10 1.64 7.77 -2.39 -0.02 1.62 16 41 H 0.13 1.85 6.83 -2.39 -0.02 1.84 16 42 H 0.03 0.89 5.23 -2.39 -0.01 0.88 16 43 H 0.06 1.99 5.54 -2.39 -0.01 1.98 16 44 H 0.12 2.21 6.50 -2.39 -0.02 2.19 16 45 H 0.07 1.95 8.03 -2.38 -0.02 1.93 16 46 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.08 2.96 7.90 -2.39 -0.02 2.94 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.05 390.40 0.59 -62.45 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.95 Total: 27.68 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.04 Total: 2.95 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -8.38 Total: -110.50 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -63.05 0.59 -62.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277244264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.975 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds