Wall clock time and date at job start Wed Apr 1 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48503 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46767 * 299.99523 * 3 2 1 6 6 H 1.48500 * 109.47460 * 59.99353 * 3 2 1 7 7 C 1.37875 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53500 * 114.20455 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98157 * 139.65245 * 10 9 7 12 12 C 1.34780 * 136.05430 * 152.62352 * 11 10 9 13 13 O 1.21276 * 119.99914 * 354.77514 * 12 11 10 14 14 C 1.50702 * 119.99958 * 174.77848 * 12 11 10 15 15 H 1.08994 * 110.35803 * 24.88200 * 14 12 11 16 16 C 1.55919 * 110.40356 * 147.21202 * 14 12 11 17 17 H 1.09010 * 115.92009 * 318.75642 * 16 14 12 18 18 C 1.55925 * 104.50047 * 189.06925 * 16 14 12 19 19 C 1.54585 * 104.64253 * 289.72005 * 18 16 14 20 20 C 1.55923 * 104.64348 * 359.97438 * 19 18 16 21 21 H 1.09004 * 115.92652 * 199.96988 * 20 19 18 22 22 C 1.56952 * 100.65242 * 326.22007 * 20 19 18 23 23 C 1.54585 * 110.40191 * 262.43165 * 14 12 11 24 24 H 1.08999 * 110.40523 * 122.41434 * 23 14 12 25 25 N 1.46902 * 110.40230 * 359.97438 * 23 14 12 26 26 C 1.46896 * 111.00061 * 93.50417 * 25 23 14 27 27 C 1.50701 * 109.47067 * 174.61993 * 26 25 23 28 28 C 1.39873 * 125.89843 * 95.07334 * 27 26 25 29 29 C 1.35311 * 107.92225 * 179.85977 * 28 27 26 30 30 N 1.34951 * 107.74520 * 0.39806 * 29 28 27 31 31 H 0.97003 * 126.04227 * 179.75317 * 30 29 28 32 32 N 1.30838 * 125.90160 * 275.37712 * 27 26 25 33 33 C 1.47062 * 87.88780 * 332.87576 * 11 10 9 34 34 H 0.96999 * 120.00486 * 0.02562 * 1 2 3 35 35 H 1.09000 * 113.41838 * 46.79392 * 9 7 2 36 36 H 1.08997 * 113.46594 * 24.87296 * 10 9 7 37 37 H 1.09000 * 113.51847 * 254.43697 * 10 9 7 38 38 H 1.08999 * 110.40467 * 48.50664 * 18 16 14 39 39 H 1.08994 * 110.40612 * 170.93254 * 18 16 14 40 40 H 1.08999 * 110.40433 * 241.20737 * 19 18 16 41 41 H 1.09001 * 110.50202 * 118.83844 * 19 18 16 42 42 H 1.08996 * 112.02732 * 296.82900 * 22 20 19 43 43 H 1.08999 * 112.03119 * 170.30118 * 22 20 19 44 44 H 1.00900 * 110.99797 * 329.55485 * 25 23 14 45 45 H 1.09003 * 109.47296 * 294.61927 * 26 25 23 46 46 H 1.08998 * 109.46995 * 54.62162 * 26 25 23 47 47 H 1.08002 * 126.03782 * 359.97438 * 28 27 26 48 48 H 1.08000 * 126.13248 * 180.14162 * 29 28 27 49 49 H 1.09004 * 113.46815 * 141.89947 * 33 11 10 50 50 H 1.09000 * 113.47240 * 272.34152 * 33 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1490 -3.7442 0.0005 11 7 1.2102 -4.3574 0.9521 12 6 0.8323 -5.6111 1.2711 13 8 1.2508 -6.5521 0.6306 14 6 -0.1104 -5.8438 2.4237 15 1 -0.7173 -4.9562 2.6022 16 6 -1.0212 -7.0772 2.1406 17 1 -1.4043 -7.1632 1.1236 18 6 -2.0809 -7.0506 3.2840 19 6 -1.2916 -7.4318 4.5573 20 6 0.1706 -7.6535 4.0631 21 1 0.8104 -8.2452 4.7178 22 6 -0.0930 -8.2436 2.6328 23 6 0.6790 -6.2250 3.6969 24 1 0.4602 -5.5253 4.5035 25 7 2.1208 -6.2514 3.4169 26 6 2.7429 -4.9596 3.7362 27 6 4.2362 -5.0646 3.5628 28 6 4.9558 -4.7096 2.4171 29 6 6.2658 -4.9483 2.6575 30 7 6.3706 -5.4453 3.9078 31 1 7.1924 -5.7115 4.3492 32 7 5.0830 -5.5088 4.4558 33 6 0.8605 -3.0002 1.3978 34 1 -0.4851 0.8400 -0.0004 35 1 0.4418 -2.5321 -0.7288 36 1 3.1386 -3.5656 0.4211 37 1 2.1859 -4.2538 -0.9623 38 1 -2.5059 -6.0520 3.3853 39 1 -2.8666 -7.7811 3.0912 40 1 -1.6891 -8.3497 4.9903 41 1 -1.3281 -6.6220 5.2859 42 1 -0.6206 -9.1965 2.6746 43 1 0.8219 -8.3138 2.0445 44 1 2.2982 -6.5110 2.4581 45 1 2.3524 -4.1929 3.0670 46 1 2.5149 -4.6917 4.7679 47 1 4.5395 -4.3132 1.5028 48 1 7.0811 -4.7762 1.9704 49 1 -0.1989 -2.8767 1.6228 50 1 1.5069 -2.6236 2.1905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277342882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:23 Heat of formation + Delta-G solvation = 88.409836 kcal Electronic energy + Delta-G solvation = -31941.335244 eV Core-core repulsion = 27971.352343 eV Total energy + Delta-G solvation = -3969.982901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21749 -40.83562 -38.93641 -36.87644 -35.34096 -32.73132 -31.77076 -30.31742 -29.80843 -28.96334 -28.63277 -27.34102 -25.47085 -25.08543 -24.67278 -22.29860 -21.38364 -20.39103 -19.89730 -19.62765 -18.92313 -18.01013 -17.85560 -17.00564 -16.58155 -16.40211 -15.36590 -15.18116 -14.89351 -14.67425 -14.51541 -14.21173 -14.01139 -13.63960 -13.46646 -13.29220 -13.05990 -12.82319 -12.40478 -12.21880 -11.94134 -11.71843 -11.50014 -11.40197 -11.31384 -11.19627 -11.05143 -10.97309 -10.86189 -10.82386 -10.64977 -10.54203 -10.47096 -10.37175 -10.15182 -9.56320 -9.35499 -9.25571 -8.93219 -8.62368 -8.60934 -8.23524 -7.90862 -6.22179 -4.27748 1.98879 2.86129 2.97070 3.03954 3.20120 3.29538 3.32239 3.51064 4.29626 4.32320 4.50999 4.58401 4.70097 4.82607 4.95391 5.00942 5.09293 5.18114 5.29197 5.33253 5.37365 5.44271 5.48913 5.61039 5.64151 5.71558 5.84421 5.87816 5.90667 5.93336 5.99806 6.02236 6.06286 6.11651 6.13789 6.18349 6.24008 6.30540 6.42631 6.45117 6.47585 6.53956 6.60518 6.76643 6.77875 7.14442 7.34298 7.50891 7.53061 7.75635 7.81259 8.13452 8.45577 8.69986 8.76760 9.39624 10.87511 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008434 B = 0.004513 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.052310 B = 6202.736467 C = 8537.510900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.070 3.930 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.098 3.902 11 N -0.640 5.640 12 C 0.537 3.463 13 O -0.557 6.557 14 C -0.138 4.138 15 H 0.090 0.910 16 C -0.078 4.078 17 H 0.098 0.902 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.086 4.086 21 H 0.104 0.896 22 C -0.123 4.123 23 C 0.107 3.893 24 H 0.085 0.915 25 N -0.680 5.680 26 C 0.128 3.872 27 C 0.089 3.911 28 C -0.258 4.258 29 C 0.051 3.949 30 N -0.483 5.483 31 H 0.435 0.565 32 N -0.280 5.280 33 C 0.096 3.904 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.356 0.644 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.149 0.851 48 H 0.174 0.826 49 H 0.058 0.942 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -11.191 8.331 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.018 3.982 10 C -0.024 4.024 11 N -0.373 5.373 12 C 0.327 3.673 13 O -0.437 6.437 14 C -0.161 4.161 15 H 0.108 0.892 16 C -0.097 4.097 17 H 0.116 0.884 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.105 4.105 21 H 0.122 0.878 22 C -0.161 4.161 23 C -0.004 4.004 24 H 0.103 0.897 25 N -0.317 5.317 26 C -0.003 4.003 27 C -0.079 4.079 28 C -0.288 4.288 29 C -0.096 4.096 30 N -0.192 5.192 31 H 0.278 0.722 32 N -0.105 5.105 33 C -0.026 4.026 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.181 0.819 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.166 0.834 48 H 0.191 0.809 49 H 0.077 0.923 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.329 -12.487 9.786 16.211 hybrid contribution 0.446 1.915 -1.347 2.383 sum 3.775 -10.573 8.439 14.044 Atomic orbital electron populations 1.69954 1.06074 1.27040 1.49141 1.25011 0.94821 0.99365 0.94208 0.86516 0.80252 0.83438 0.77723 1.19527 1.20896 1.20905 1.20925 0.93019 0.89471 1.51937 0.91763 1.20327 0.94697 0.91202 0.92008 1.23377 0.94260 0.93269 0.91526 1.50113 1.42247 1.04879 1.40059 1.19918 0.81868 0.81120 0.84389 1.90634 1.58437 1.41074 1.53601 1.23192 0.97794 1.00294 0.94852 0.89211 1.23346 0.94549 0.93586 0.98224 0.88370 1.22645 0.97347 1.01379 0.94591 1.22634 0.95124 1.01106 0.97143 1.23568 0.94991 0.95033 0.96905 0.87768 1.23661 1.00083 0.96680 0.95654 1.22612 0.86132 0.97319 0.94363 0.89714 1.60486 1.10387 1.29029 1.31794 1.20424 0.86112 0.91654 1.02079 1.22101 0.95888 0.97715 0.92169 1.21632 0.92496 1.13190 1.01439 1.22530 0.99099 0.99579 0.88362 1.46336 1.08305 1.52401 1.12126 0.72166 1.77269 0.87599 1.23460 1.22128 1.23659 0.99670 0.76965 1.02296 0.92683 0.91467 0.90801 0.92504 0.91679 0.91695 0.91744 0.91765 0.91707 0.89659 0.81900 0.91750 0.89955 0.83369 0.80852 0.92320 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 13.26 55.43 0.74 -22.75 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -12.55 8.82 -34.44 -0.30 -12.86 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 0.82 3.79 -91.25 -0.35 0.48 16 10 C 0.10 1.90 8.18 -8.50 -0.07 1.83 16 11 N -0.64 -11.93 2.76 -185.22 -0.51 -12.45 16 12 C 0.54 9.69 4.92 -10.98 -0.05 9.63 16 13 O -0.56 -11.37 14.57 5.56 0.08 -11.29 16 14 C -0.14 -2.05 2.63 -89.38 -0.24 -2.28 16 15 H 0.09 1.32 7.38 -51.93 -0.38 0.94 16 16 C -0.08 -1.04 4.29 -85.34 -0.37 -1.41 16 17 H 0.10 1.40 8.14 -51.92 -0.42 0.98 16 18 C -0.12 -1.32 6.21 -24.34 -0.15 -1.47 16 19 C -0.12 -1.24 6.21 -24.34 -0.15 -1.39 16 20 C -0.09 -1.03 4.87 -85.32 -0.42 -1.45 16 21 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.12 -1.62 6.25 -22.43 -0.14 -1.76 16 23 C 0.11 1.45 2.60 -65.28 -0.17 1.28 16 24 H 0.08 1.08 7.38 -51.93 -0.38 0.70 16 25 N -0.68 -10.43 6.08 -105.43 -0.64 -11.07 16 26 C 0.13 1.97 5.87 -4.98 -0.03 1.94 16 27 C 0.09 1.42 6.78 -82.40 -0.56 0.86 16 28 C -0.26 -3.86 10.74 -40.01 -0.43 -4.29 16 29 C 0.05 0.61 11.99 -17.22 -0.21 0.40 16 30 N -0.48 -5.76 7.36 30.44 0.22 -5.54 16 31 H 0.44 3.53 8.96 -182.61 -1.64 1.90 16 32 N -0.28 -4.36 12.70 33.67 0.43 -3.93 16 33 C 0.10 1.90 7.11 -8.50 -0.06 1.84 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.07 1.67 8.11 -51.93 -0.42 1.25 16 36 H 0.07 1.36 6.29 -51.93 -0.33 1.04 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.35 6.53 -51.93 -0.34 1.01 16 44 H 0.36 6.24 5.44 -39.29 -0.21 6.03 16 45 H 0.06 1.05 4.89 -51.93 -0.25 0.80 16 46 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 47 H 0.15 2.28 6.25 -52.49 -0.33 1.95 16 48 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 49 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 50 H 0.07 1.45 7.00 -51.93 -0.36 1.09 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -28.94 387.22 -11.45 -40.39 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -8.80 Total: 13.21 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.78 Total: -7.00 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.23 Total: -55.73 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.94 -11.45 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277342882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.804 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds