Wall clock time and date at job start Wed Apr 1 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48503 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46767 * 299.99523 * 3 2 1 6 6 H 1.48500 * 109.47460 * 59.99353 * 3 2 1 7 7 C 1.37875 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53500 * 114.20455 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98157 * 139.65245 * 10 9 7 12 12 C 1.34780 * 136.05430 * 152.62352 * 11 10 9 13 13 O 1.21276 * 119.99914 * 354.77514 * 12 11 10 14 14 C 1.50702 * 119.99958 * 174.77848 * 12 11 10 15 15 H 1.08994 * 110.35803 * 24.88200 * 14 12 11 16 16 C 1.55919 * 110.40356 * 147.21202 * 14 12 11 17 17 H 1.09010 * 115.92009 * 318.75642 * 16 14 12 18 18 C 1.55925 * 104.50047 * 189.06925 * 16 14 12 19 19 C 1.54585 * 104.64253 * 289.72005 * 18 16 14 20 20 C 1.55923 * 104.64348 * 359.97438 * 19 18 16 21 21 H 1.09004 * 115.92652 * 199.96988 * 20 19 18 22 22 C 1.56952 * 100.65242 * 326.22007 * 20 19 18 23 23 C 1.54585 * 110.40191 * 262.43165 * 14 12 11 24 24 H 1.08999 * 110.40523 * 122.41434 * 23 14 12 25 25 N 1.46902 * 110.40230 * 359.97438 * 23 14 12 26 26 C 1.46896 * 111.00061 * 93.50417 * 25 23 14 27 27 C 1.50701 * 109.47067 * 174.61993 * 26 25 23 28 28 C 1.39873 * 125.89843 * 95.07334 * 27 26 25 29 29 C 1.35311 * 107.92225 * 179.85977 * 28 27 26 30 30 N 1.34951 * 107.74520 * 0.39806 * 29 28 27 31 31 H 0.97003 * 126.04227 * 179.75317 * 30 29 28 32 32 N 1.30838 * 125.90160 * 275.37712 * 27 26 25 33 33 C 1.47062 * 87.88780 * 332.87576 * 11 10 9 34 34 H 0.96999 * 120.00486 * 0.02562 * 1 2 3 35 35 H 1.09000 * 113.41838 * 46.79392 * 9 7 2 36 36 H 1.08997 * 113.46594 * 24.87296 * 10 9 7 37 37 H 1.09000 * 113.51847 * 254.43697 * 10 9 7 38 38 H 1.08999 * 110.40467 * 48.50664 * 18 16 14 39 39 H 1.08994 * 110.40612 * 170.93254 * 18 16 14 40 40 H 1.08999 * 110.40433 * 241.20737 * 19 18 16 41 41 H 1.09001 * 110.50202 * 118.83844 * 19 18 16 42 42 H 1.08996 * 112.02732 * 296.82900 * 22 20 19 43 43 H 1.08999 * 112.03119 * 170.30118 * 22 20 19 44 44 H 1.00900 * 110.99797 * 329.55485 * 25 23 14 45 45 H 1.09003 * 109.47296 * 294.61927 * 26 25 23 46 46 H 1.08998 * 109.46995 * 54.62162 * 26 25 23 47 47 H 1.08002 * 126.03782 * 359.97438 * 28 27 26 48 48 H 1.08000 * 126.13248 * 180.14162 * 29 28 27 49 49 H 1.09004 * 113.46815 * 141.89947 * 33 11 10 50 50 H 1.09000 * 113.47240 * 272.34152 * 33 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1490 -3.7442 0.0005 11 7 1.2102 -4.3574 0.9521 12 6 0.8323 -5.6111 1.2711 13 8 1.2508 -6.5521 0.6306 14 6 -0.1104 -5.8438 2.4237 15 1 -0.7173 -4.9562 2.6022 16 6 -1.0212 -7.0772 2.1406 17 1 -1.4043 -7.1632 1.1236 18 6 -2.0809 -7.0506 3.2840 19 6 -1.2916 -7.4318 4.5573 20 6 0.1706 -7.6535 4.0631 21 1 0.8104 -8.2452 4.7178 22 6 -0.0930 -8.2436 2.6328 23 6 0.6790 -6.2250 3.6969 24 1 0.4602 -5.5253 4.5035 25 7 2.1208 -6.2514 3.4169 26 6 2.7429 -4.9596 3.7362 27 6 4.2362 -5.0646 3.5628 28 6 4.9558 -4.7096 2.4171 29 6 6.2658 -4.9483 2.6575 30 7 6.3706 -5.4453 3.9078 31 1 7.1924 -5.7115 4.3492 32 7 5.0830 -5.5088 4.4558 33 6 0.8605 -3.0002 1.3978 34 1 -0.4851 0.8400 -0.0004 35 1 0.4418 -2.5321 -0.7288 36 1 3.1386 -3.5656 0.4211 37 1 2.1859 -4.2538 -0.9623 38 1 -2.5059 -6.0520 3.3853 39 1 -2.8666 -7.7811 3.0912 40 1 -1.6891 -8.3497 4.9903 41 1 -1.3281 -6.6220 5.2859 42 1 -0.6206 -9.1965 2.6746 43 1 0.8219 -8.3138 2.0445 44 1 2.2982 -6.5110 2.4581 45 1 2.3524 -4.1929 3.0670 46 1 2.5149 -4.6917 4.7679 47 1 4.5395 -4.3132 1.5028 48 1 7.0811 -4.7762 1.9704 49 1 -0.1989 -2.8767 1.6228 50 1 1.5069 -2.6236 2.1905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277342882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:22 Heat of formation + Delta-G solvation = 71.022865 kcal Electronic energy + Delta-G solvation = -31942.089200 eV Core-core repulsion = 27971.352343 eV Total energy + Delta-G solvation = -3970.736857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40008 -41.92952 -40.40595 -38.39855 -36.48815 -34.62730 -32.85885 -31.65518 -30.86532 -30.33128 -29.65708 -28.47306 -27.03073 -26.77150 -25.96670 -23.57150 -22.41953 -21.86623 -20.98804 -20.77475 -20.06195 -19.24006 -19.00224 -18.74012 -17.94246 -17.81116 -16.77017 -16.45858 -16.27001 -16.03319 -15.75632 -15.60145 -15.15459 -14.94700 -14.57662 -14.43182 -14.29140 -14.08200 -14.04170 -13.73753 -13.24476 -13.13572 -12.98401 -12.79713 -12.63642 -12.59661 -12.40657 -12.18581 -12.16824 -11.97254 -11.94974 -11.68946 -11.60654 -11.50305 -11.28696 -11.12166 -11.03265 -10.60449 -10.46250 -10.38622 -9.67948 -9.54731 -9.39665 -8.15313 -6.25577 0.95577 1.45912 1.50103 1.58222 1.60170 1.74662 2.00247 2.05862 2.47055 3.15223 3.19020 3.41020 3.50953 3.59145 3.69976 3.81854 3.98388 4.15728 4.25205 4.29440 4.30965 4.34365 4.37784 4.43063 4.45355 4.48431 4.56941 4.64430 4.67508 4.72628 4.75700 4.78468 4.88072 4.92309 4.95942 5.03719 5.07038 5.10585 5.16609 5.19501 5.24180 5.32585 5.46411 5.52603 5.59445 5.64870 5.83341 5.99794 6.22028 6.25006 6.49834 6.74890 6.83432 6.92175 7.18688 7.44617 8.94840 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008434 B = 0.004513 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.052310 B = 6202.736467 C = 8537.510900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.025 3.975 10 C 0.107 3.893 11 N -0.638 5.638 12 C 0.537 3.463 13 O -0.582 6.582 14 C -0.135 4.135 15 H 0.090 0.910 16 C -0.084 4.084 17 H 0.084 0.916 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.079 4.079 21 H 0.109 0.891 22 C -0.122 4.122 23 C 0.105 3.895 24 H 0.097 0.903 25 N -0.680 5.680 26 C 0.131 3.869 27 C 0.072 3.928 28 C -0.297 4.297 29 C 0.076 3.924 30 N -0.469 5.469 31 H 0.452 0.548 32 N -0.309 5.309 33 C 0.116 3.884 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.343 0.657 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.137 0.863 48 H 0.218 0.782 49 H 0.054 0.946 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 -11.720 10.006 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.015 4.015 11 N -0.370 5.370 12 C 0.328 3.672 13 O -0.463 6.463 14 C -0.158 4.158 15 H 0.108 0.892 16 C -0.103 4.103 17 H 0.102 0.898 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.098 4.098 21 H 0.127 0.873 22 C -0.159 4.159 23 C -0.006 4.006 24 H 0.115 0.885 25 N -0.315 5.315 26 C 0.001 3.999 27 C -0.094 4.094 28 C -0.326 4.326 29 C -0.072 4.072 30 N -0.179 5.179 31 H 0.299 0.701 32 N -0.134 5.134 33 C -0.007 4.007 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.165 0.835 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.155 0.845 48 H 0.234 0.766 49 H 0.072 0.928 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.152 -13.035 11.491 17.866 hybrid contribution 0.282 2.013 -1.942 2.811 sum 4.434 -11.022 9.550 15.243 Atomic orbital electron populations 1.70061 1.07405 1.27663 1.50615 1.25704 0.95460 1.02363 0.94154 0.85575 0.79422 0.79711 0.77381 1.18655 1.21127 1.20771 1.21209 0.93306 0.90309 1.51074 0.91435 1.20198 0.94517 0.91898 0.92850 1.23216 0.94565 0.91949 0.91809 1.50049 1.42151 1.04996 1.39853 1.20524 0.81681 0.80202 0.84746 1.90621 1.59396 1.41599 1.54692 1.23263 0.97396 1.01134 0.93984 0.89160 1.23383 0.95410 0.92825 0.98678 0.89801 1.22621 0.96900 1.02158 0.93538 1.22614 0.93197 1.02495 0.96852 1.23563 0.96366 0.93567 0.96277 0.87311 1.23600 0.98799 0.97519 0.95981 1.22796 0.85050 0.98901 0.93806 0.88510 1.60560 1.11414 1.28958 1.30596 1.20366 0.86411 0.91254 1.01912 1.22198 0.96141 0.98335 0.92763 1.21726 0.94080 1.15578 1.01233 1.23088 0.99091 0.96717 0.88332 1.46360 1.08076 1.51290 1.12176 0.70071 1.77179 0.88895 1.24510 1.22821 1.23318 0.99372 0.77245 1.00735 0.92763 0.94698 0.89550 0.92989 0.91452 0.90057 0.89742 0.90763 0.89939 0.92811 0.83462 0.93139 0.89355 0.84546 0.76584 0.92771 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 13.26 21.45 0.28 -49.36 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.95 40.23 29.54 68.60 2.03 42.26 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.52 -25.66 8.82 25.60 0.23 -25.44 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.02 1.13 3.79 -11.20 -0.04 1.09 16 10 C 0.11 4.28 8.18 83.18 0.68 4.96 16 11 N -0.64 -24.43 2.76 -858.29 -2.37 -26.80 16 12 C 0.54 19.81 4.92 87.66 0.43 20.24 16 13 O -0.58 -24.46 14.57 -3.02 -0.04 -24.51 16 14 C -0.13 -3.97 2.63 -9.99 -0.03 -3.99 16 15 H 0.09 2.63 7.38 -2.39 -0.02 2.61 16 16 C -0.08 -2.19 4.29 -7.37 -0.03 -2.22 16 17 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 18 C -0.11 -2.20 6.21 32.15 0.20 -2.00 16 19 C -0.11 -1.95 6.21 32.15 0.20 -1.75 16 20 C -0.08 -1.75 4.87 -7.36 -0.04 -1.78 16 21 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 22 C -0.12 -3.09 6.25 33.38 0.21 -2.88 16 23 C 0.11 2.76 2.60 46.49 0.12 2.89 16 24 H 0.10 2.32 7.38 -2.39 -0.02 2.30 16 25 N -0.68 -20.84 6.08 -487.48 -2.97 -23.81 16 26 C 0.13 4.05 5.87 85.56 0.50 4.55 16 27 C 0.07 2.29 6.78 43.10 0.29 2.58 16 28 C -0.30 -8.74 10.74 21.99 0.24 -8.51 16 29 C 0.08 1.63 11.99 83.54 1.00 2.63 16 30 N -0.47 -10.22 7.36 -57.59 -0.42 -10.64 16 31 H 0.45 6.19 8.96 -213.33 -1.91 4.28 16 32 N -0.31 -9.33 12.70 -47.38 -0.60 -9.93 16 33 C 0.12 4.67 7.11 83.18 0.59 5.27 16 34 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.03 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.09 3.25 6.29 -2.39 -0.02 3.23 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 1.28 7.84 -2.39 -0.02 1.27 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.72 6.53 -2.39 -0.02 1.71 16 44 H 0.34 12.25 5.44 -89.69 -0.49 11.76 16 45 H 0.05 1.68 4.89 -2.39 -0.01 1.66 16 46 H 0.09 2.54 7.95 -2.39 -0.02 2.52 16 47 H 0.14 4.26 6.25 -2.91 -0.02 4.24 16 48 H 0.22 2.61 8.06 -2.91 -0.02 2.58 16 49 H 0.05 2.22 8.01 -2.38 -0.02 2.20 16 50 H 0.08 3.15 7.00 -2.39 -0.02 3.13 16 Total: -1.00 -63.85 387.22 -0.50 -64.35 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -1.42 Total: 41.16 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.02 Total: -2.72 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.08 Total: -120.54 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.51 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -63.85 -0.50 -64.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277342882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.372 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds