Wall clock time and date at job start Wed Apr 1 2020 02:46:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86798 * 119.99826 * 2 1
4 4 H 1.48496 * 109.47476 * 359.97438 * 3 2 1
5 5 H 1.48507 * 109.46978 * 120.00026 * 3 2 1
6 6 H 1.48507 * 109.46924 * 239.99644 * 3 2 1
7 7 C 1.37871 * 119.99656 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1
10 10 C 1.53956 * 113.73702 * 276.67423 * 9 7 2
11 11 N 1.47578 * 86.11383 * 222.04475 * 10 9 7
12 12 C 1.34774 * 134.49136 * 204.63599 * 11 10 9
13 13 O 1.21286 * 120.00231 * 180.02562 * 12 11 10
14 14 C 1.50695 * 120.00308 * 0.02562 * 12 11 10
15 15 H 1.08998 * 115.55568 * 309.94362 * 14 12 11
16 16 C 1.53050 * 117.51012 * 164.17792 * 14 12 11
17 17 C 1.52734 * 59.94497 * 252.53250 * 16 14 12
18 18 C 1.53221 * 117.83544 * 107.73416 * 17 16 14
19 19 C 1.53259 * 108.62626 * 196.98020 * 18 17 16
20 20 N 1.46812 * 109.44791 * 304.43421 * 19 18 17
21 21 C 1.46902 * 110.99770 * 189.19352 * 20 19 18
22 22 C 1.50705 * 109.46981 * 45.29005 * 21 20 19
23 23 C 1.39869 * 125.89767 * 94.71512 * 22 21 20
24 24 C 1.35323 * 107.91452 * 179.86275 * 23 22 21
25 25 N 1.34944 * 107.74649 * 0.39217 * 24 23 22
26 26 H 0.97002 * 126.03691 * 179.75009 * 25 24 23
27 27 N 1.30832 * 125.89766 * 275.02232 * 22 21 20
28 28 C 1.46801 * 111.58869 * 64.81696 * 20 19 18
29 29 C 1.53222 * 117.84005 * 252.25840 * 17 16 14
30 30 C 1.47583 * 91.01872 * 24.64324 * 11 10 9
31 31 H 0.97003 * 119.99762 * 0.02562 * 1 2 3
32 32 H 1.08992 * 112.94814 * 48.40241 * 9 7 2
33 33 H 1.08994 * 113.76674 * 336.34539 * 10 9 7
34 34 H 1.08994 * 113.76545 * 107.74549 * 10 9 7
35 35 H 1.08999 * 117.50075 * 0.02562 * 16 14 12
36 36 H 1.09005 * 117.50605 * 145.05662 * 16 14 12
37 37 H 1.08996 * 109.61006 * 316.72438 * 18 17 16
38 38 H 1.09003 * 109.61170 * 77.23674 * 18 17 16
39 39 H 1.08997 * 109.47615 * 184.43429 * 19 18 17
40 40 H 1.09008 * 109.47560 * 64.42480 * 19 18 17
41 41 H 1.08999 * 109.47151 * 165.28530 * 21 20 19
42 42 H 1.08996 * 109.47435 * 285.28478 * 21 20 19
43 43 H 1.07991 * 126.04302 * 359.97438 * 23 22 21
44 44 H 1.08000 * 126.12318 * 180.14218 * 24 23 22
45 45 H 1.08995 * 109.47527 * 175.18799 * 28 20 19
46 46 H 1.08997 * 109.48243 * 55.17485 * 28 20 19
47 47 H 1.08993 * 109.61064 * 282.76066 * 29 17 16
48 48 H 1.09001 * 109.60880 * 43.28444 * 29 17 16
49 49 H 1.08996 * 113.76683 * 221.06069 * 30 11 10
50 50 H 1.09000 * 113.87386 * 89.67036 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1029 1.6964 1.2126
6 1 3.1030 1.6964 -1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 0.7987 -2.9536 1.4002
11 7 1.2203 -4.3063 0.9872
12 6 0.8818 -5.5563 1.3606
13 8 1.4095 -6.5113 0.8310
14 6 -0.1524 -5.7674 2.4361
15 1 0.0002 -5.1988 3.3534
16 6 -0.7651 -7.1642 2.5632
17 6 -1.5927 -6.0150 1.9911
18 6 -1.8841 -6.0229 0.4869
19 6 -2.3337 -4.6189 0.0680
20 7 -3.4826 -4.2094 0.8851
21 6 -4.0778 -2.9682 0.3720
22 6 -4.2127 -3.0578 -1.1264
23 6 -5.3541 -3.4661 -1.8241
24 6 -5.0765 -3.4071 -3.1472
25 7 -3.8019 -2.9851 -3.2816
26 1 -3.3299 -2.8525 -4.1186
27 7 -3.2806 -2.7725 -1.9989
28 6 -3.1174 -4.0718 2.3002
29 6 -2.7173 -5.4416 2.8595
30 6 2.1615 -3.7405 0.0012
31 1 -0.4850 0.8401 -0.0004
32 1 0.4617 -2.5342 -0.7503
33 1 1.3950 -2.5363 2.2116
34 1 -0.2742 -2.8597 1.5672
35 1 -0.4198 -7.9304 1.8691
36 1 -1.0153 -7.5149 3.5645
37 1 -0.9813 -6.2961 -0.0592
38 1 -2.6762 -6.7401 0.2714
39 1 -2.6201 -4.6276 -0.9836
40 1 -1.5139 -3.9157 0.2155
41 1 -5.0624 -2.8261 0.8175
42 1 -3.4374 -2.1246 0.6294
43 1 -6.2918 -3.7723 -1.3846
44 1 -5.7527 -3.6572 -3.9514
45 1 -3.9696 -3.6858 2.8596
46 1 -2.2788 -3.3820 2.3938
47 1 -3.5764 -6.1119 2.8351
48 1 -2.3664 -5.3295 3.8854
49 1 2.1764 -4.2749 -0.9487
50 1 3.1586 -3.5538 0.3999
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001277344198.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:46:14
Heat of formation + Delta-G solvation = 107.582393 kcal
Electronic energy + Delta-G solvation = -31941.953707 eV
Core-core repulsion = 27972.802191 eV
Total energy + Delta-G solvation = -3969.151517 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.09091 -40.12357 -38.49546 -37.14155 -35.72004 -32.61246 -32.21456 -30.76221
-29.79269 -29.69534 -29.04825 -25.89296 -25.27696 -25.05154 -23.19865 -22.94970
-21.49466 -21.27776 -20.06713 -19.36870 -18.79577 -17.95849 -17.62487 -16.87247
-16.16142 -16.00281 -15.27923 -14.91319 -14.72553 -14.60690 -14.54688 -14.11830
-13.74570 -13.64054 -13.40218 -13.26962 -13.04488 -12.77971 -12.49334 -12.27896
-12.13308 -11.83333 -11.65939 -11.50818 -11.45118 -11.32992 -11.17225 -10.92968
-10.89619 -10.78252 -10.41179 -10.36907 -10.26691 -9.83779 -9.65608 -9.43326
-9.26849 -9.22990 -8.85180 -8.59565 -8.53613 -7.97845 -7.77584 -6.11888
-4.17878 2.04415 2.85938 3.03840 3.10318 3.26325 3.31763 3.33944
3.60161 4.01827 4.29005 4.36247 4.71638 4.81970 4.90296 4.91980
5.01708 5.03549 5.17457 5.26343 5.35435 5.50053 5.63879 5.65501
5.71764 5.78422 5.82756 5.88298 5.90796 5.91587 5.99553 6.09509
6.13985 6.16423 6.18808 6.24978 6.27734 6.35000 6.38566 6.43479
6.45483 6.53503 6.64748 6.74346 6.77912 6.89202 7.27289 7.34660
7.41223 7.61837 7.84359 7.87470 8.22603 8.59427 8.84154 8.86946
9.48029 10.96294
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007182 B = 0.005368 C = 0.003624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3897.535822 B = 5214.855284 C = 7725.134103
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.071 3.929
3 Si 0.891 3.109
4 H -0.287 1.287
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.522 4.522
8 H 0.060 0.940
9 C 0.039 3.961
10 C 0.107 3.893
11 N -0.632 5.632
12 C 0.557 3.443
13 O -0.569 6.569
14 C -0.174 4.174
15 H 0.117 0.883
16 C -0.144 4.144
17 C -0.093 4.093
18 C -0.079 4.079
19 C 0.055 3.945
20 N -0.530 5.530
21 C 0.132 3.868
22 C 0.078 3.922
23 C -0.258 4.258
24 C 0.045 3.955
25 N -0.478 5.478
26 H 0.438 0.562
27 N -0.261 5.261
28 C 0.057 3.943
29 C -0.074 4.074
30 C 0.101 3.899
31 H 0.262 0.738
32 H 0.066 0.934
33 H 0.071 0.929
34 H 0.060 0.940
35 H 0.103 0.897
36 H 0.098 0.902
37 H 0.068 0.932
38 H 0.071 0.929
39 H 0.077 0.923
40 H 0.053 0.947
41 H 0.090 0.910
42 H 0.059 0.941
43 H 0.145 0.855
44 H 0.171 0.829
45 H 0.074 0.926
46 H 0.042 0.958
47 H 0.077 0.923
48 H 0.068 0.932
49 H 0.058 0.942
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.670 -7.470 0.935 14.738
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.513 5.513
2 C -0.133 4.133
3 Si 0.718 3.282
4 H -0.213 1.213
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.560 4.560
8 H 0.078 0.922
9 C 0.020 3.980
10 C -0.015 4.015
11 N -0.364 5.364
12 C 0.346 3.654
13 O -0.450 6.450
14 C -0.195 4.195
15 H 0.135 0.865
16 C -0.182 4.182
17 C -0.094 4.094
18 C -0.117 4.117
19 C -0.072 4.072
20 N -0.256 5.256
21 C 0.003 3.997
22 C -0.089 4.089
23 C -0.288 4.288
24 C -0.102 4.102
25 N -0.186 5.186
26 H 0.281 0.719
27 N -0.085 5.085
28 C -0.071 4.071
29 C -0.111 4.111
30 C -0.021 4.021
31 H 0.072 0.928
32 H 0.084 0.916
33 H 0.089 0.911
34 H 0.079 0.921
35 H 0.121 0.879
36 H 0.116 0.884
37 H 0.087 0.913
38 H 0.089 0.911
39 H 0.096 0.904
40 H 0.071 0.929
41 H 0.108 0.892
42 H 0.077 0.923
43 H 0.162 0.838
44 H 0.189 0.811
45 H 0.093 0.907
46 H 0.061 0.939
47 H 0.095 0.905
48 H 0.086 0.914
49 H 0.077 0.923
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -11.789 -7.982 0.523 14.247
hybrid contribution 0.480 1.441 -0.193 1.531
sum -11.309 -6.541 0.331 13.069
Atomic orbital electron populations
1.69961 1.05780 1.26905 1.48665 1.24986 0.94838 0.99055 0.94426
0.86686 0.79660 0.83085 0.78736 1.21307 1.20180 1.20191 1.20901
0.92874 0.89782 1.52432 0.92174 1.20455 0.94203 0.91088 0.92247
1.23688 0.98982 0.76885 1.01968 1.50335 1.41651 1.04659 1.39785
1.19217 0.82247 0.81779 0.82148 1.90613 1.56692 1.40623 1.57121
1.22323 0.94791 1.02181 1.00240 0.86491 1.22992 1.01711 0.91037
1.02427 1.21516 0.89990 1.01475 0.96444 1.21228 1.01027 0.97434
0.91967 1.22203 0.91889 0.95660 0.97483 1.61938 1.30893 1.30497
1.02227 1.20448 1.00605 0.92157 0.86450 1.22122 0.91931 0.98850
0.95984 1.21365 1.01133 1.14178 0.92114 1.22522 0.87934 1.01007
0.98783 1.46465 1.10393 1.53543 1.08224 0.71900 1.77695 1.21204
1.22343 0.87295 1.22081 0.99777 0.96717 0.88557 1.21205 0.96725
0.96271 0.96937 1.23498 0.94376 0.93770 0.90477 0.92790 0.91635
0.91117 0.92136 0.87893 0.88393 0.91348 0.91079 0.90444 0.92862
0.89197 0.92251 0.83761 0.81143 0.90721 0.93946 0.90458 0.91373
0.92339 0.91011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.71 13.27 55.43 0.74 -22.98 16
2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16
3 Si 0.89 20.29 29.54 -169.99 -5.02 15.26 16
4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16
6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
7 C -0.52 -13.41 8.77 -34.44 -0.30 -13.71 16
8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
9 C 0.04 0.93 3.62 -90.84 -0.33 0.60 16
10 C 0.11 2.30 7.90 -2.97 -0.02 2.27 16
11 N -0.63 -13.22 3.61 -178.43 -0.64 -13.87 16
12 C 0.56 11.33 6.23 -10.99 -0.07 11.26 16
13 O -0.57 -13.19 16.89 5.55 0.09 -13.10 16
14 C -0.17 -2.84 5.63 -91.87 -0.52 -3.36 16
15 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16
16 C -0.14 -2.01 9.51 -26.84 -0.26 -2.27 16
17 C -0.09 -1.35 2.02 -154.54 -0.31 -1.66 16
18 C -0.08 -1.26 5.52 -26.48 -0.15 -1.41 16
19 C 0.06 0.94 4.99 -3.74 -0.02 0.92 16
20 N -0.53 -7.70 4.73 -235.89 -1.12 -8.81 16
21 C 0.13 1.92 5.83 -4.97 -0.03 1.89 16
22 C 0.08 1.20 5.18 -82.41 -0.43 0.77 16
23 C -0.26 -3.20 10.74 -40.01 -0.43 -3.63 16
24 C 0.04 0.48 11.99 -17.22 -0.21 0.27 16
25 N -0.48 -6.16 7.36 30.45 0.22 -5.93 16
26 H 0.44 4.41 8.96 -182.61 -1.64 2.77 16
27 N -0.26 -4.50 11.34 33.67 0.38 -4.12 16
28 C 0.06 0.75 5.45 -3.74 -0.02 0.73 16
29 C -0.07 -0.88 5.87 -26.48 -0.16 -1.04 16
30 C 0.10 2.18 8.39 -2.97 -0.02 2.15 16
31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16
32 H 0.07 1.74 8.13 -51.93 -0.42 1.31 16
33 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16
34 H 0.06 1.31 6.53 -51.93 -0.34 0.97 16
35 H 0.10 1.58 7.76 -51.93 -0.40 1.17 16
36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16
37 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16
38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
39 H 0.08 1.41 5.56 -51.93 -0.29 1.12 16
40 H 0.05 1.09 6.85 -51.92 -0.36 0.73 16
41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
42 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16
43 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16
44 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16
45 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16
46 H 0.04 0.65 7.48 -51.93 -0.39 0.27 16
47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
48 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16
49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
50 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16
LS Contribution 400.62 15.07 6.04 6.04
Total: -1.00 -31.26 400.62 -11.88 -43.14
By element:
Atomic # 1 Polarization: 18.01 SS G_CDS: -9.21 Total: 8.81 kcal
Atomic # 6 Polarization: -1.07 SS G_CDS: -3.36 Total: -4.44 kcal
Atomic # 7 Polarization: -55.30 SS G_CDS: -0.42 Total: -55.71 kcal
Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal
Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -31.26 -11.88 -43.14 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277344198.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.721 kcal
(2) G-P(sol) polarization free energy of solvation -31.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.582 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds