Wall clock time and date at job start Wed Apr 1 2020 02:46:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86798 * 119.99826 * 2 1
4 4 H 1.48496 * 109.47476 * 359.97438 * 3 2 1
5 5 H 1.48507 * 109.46978 * 120.00026 * 3 2 1
6 6 H 1.48507 * 109.46924 * 239.99644 * 3 2 1
7 7 C 1.37871 * 119.99656 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1
10 10 C 1.53956 * 113.73702 * 276.67423 * 9 7 2
11 11 N 1.47578 * 86.11383 * 222.04475 * 10 9 7
12 12 C 1.34774 * 134.49136 * 204.63599 * 11 10 9
13 13 O 1.21286 * 120.00231 * 180.02562 * 12 11 10
14 14 C 1.50695 * 120.00308 * 0.02562 * 12 11 10
15 15 H 1.08998 * 115.55568 * 309.94362 * 14 12 11
16 16 C 1.53050 * 117.51012 * 164.17792 * 14 12 11
17 17 C 1.52734 * 59.94497 * 252.53250 * 16 14 12
18 18 C 1.53221 * 117.83544 * 107.73416 * 17 16 14
19 19 C 1.53259 * 108.62626 * 196.98020 * 18 17 16
20 20 N 1.46812 * 109.44791 * 304.43421 * 19 18 17
21 21 C 1.46902 * 110.99770 * 189.19352 * 20 19 18
22 22 C 1.50705 * 109.46981 * 45.29005 * 21 20 19
23 23 C 1.39869 * 125.89767 * 94.71512 * 22 21 20
24 24 C 1.35323 * 107.91452 * 179.86275 * 23 22 21
25 25 N 1.34944 * 107.74649 * 0.39217 * 24 23 22
26 26 H 0.97002 * 126.03691 * 179.75009 * 25 24 23
27 27 N 1.30832 * 125.89766 * 275.02232 * 22 21 20
28 28 C 1.46801 * 111.58869 * 64.81696 * 20 19 18
29 29 C 1.53222 * 117.84005 * 252.25840 * 17 16 14
30 30 C 1.47583 * 91.01872 * 24.64324 * 11 10 9
31 31 H 0.97003 * 119.99762 * 0.02562 * 1 2 3
32 32 H 1.08992 * 112.94814 * 48.40241 * 9 7 2
33 33 H 1.08994 * 113.76674 * 336.34539 * 10 9 7
34 34 H 1.08994 * 113.76545 * 107.74549 * 10 9 7
35 35 H 1.08999 * 117.50075 * 0.02562 * 16 14 12
36 36 H 1.09005 * 117.50605 * 145.05662 * 16 14 12
37 37 H 1.08996 * 109.61006 * 316.72438 * 18 17 16
38 38 H 1.09003 * 109.61170 * 77.23674 * 18 17 16
39 39 H 1.08997 * 109.47615 * 184.43429 * 19 18 17
40 40 H 1.09008 * 109.47560 * 64.42480 * 19 18 17
41 41 H 1.08999 * 109.47151 * 165.28530 * 21 20 19
42 42 H 1.08996 * 109.47435 * 285.28478 * 21 20 19
43 43 H 1.07991 * 126.04302 * 359.97438 * 23 22 21
44 44 H 1.08000 * 126.12318 * 180.14218 * 24 23 22
45 45 H 1.08995 * 109.47527 * 175.18799 * 28 20 19
46 46 H 1.08997 * 109.48243 * 55.17485 * 28 20 19
47 47 H 1.08993 * 109.61064 * 282.76066 * 29 17 16
48 48 H 1.09001 * 109.60880 * 43.28444 * 29 17 16
49 49 H 1.08996 * 113.76683 * 221.06069 * 30 11 10
50 50 H 1.09000 * 113.87386 * 89.67036 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1029 1.6964 1.2126
6 1 3.1030 1.6964 -1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 0.7987 -2.9536 1.4002
11 7 1.2203 -4.3063 0.9872
12 6 0.8818 -5.5563 1.3606
13 8 1.4095 -6.5113 0.8310
14 6 -0.1524 -5.7674 2.4361
15 1 0.0002 -5.1988 3.3534
16 6 -0.7651 -7.1642 2.5632
17 6 -1.5927 -6.0150 1.9911
18 6 -1.8841 -6.0229 0.4869
19 6 -2.3337 -4.6189 0.0680
20 7 -3.4826 -4.2094 0.8851
21 6 -4.0778 -2.9682 0.3720
22 6 -4.2127 -3.0578 -1.1264
23 6 -5.3541 -3.4661 -1.8241
24 6 -5.0765 -3.4071 -3.1472
25 7 -3.8019 -2.9851 -3.2816
26 1 -3.3299 -2.8525 -4.1186
27 7 -3.2806 -2.7725 -1.9989
28 6 -3.1174 -4.0718 2.3002
29 6 -2.7173 -5.4416 2.8595
30 6 2.1615 -3.7405 0.0012
31 1 -0.4850 0.8401 -0.0004
32 1 0.4617 -2.5342 -0.7503
33 1 1.3950 -2.5363 2.2116
34 1 -0.2742 -2.8597 1.5672
35 1 -0.4198 -7.9304 1.8691
36 1 -1.0153 -7.5149 3.5645
37 1 -0.9813 -6.2961 -0.0592
38 1 -2.6762 -6.7401 0.2714
39 1 -2.6201 -4.6276 -0.9836
40 1 -1.5139 -3.9157 0.2155
41 1 -5.0624 -2.8261 0.8175
42 1 -3.4374 -2.1246 0.6294
43 1 -6.2918 -3.7723 -1.3846
44 1 -5.7527 -3.6572 -3.9514
45 1 -3.9696 -3.6858 2.8596
46 1 -2.2788 -3.3820 2.3938
47 1 -3.5764 -6.1119 2.8351
48 1 -2.3664 -5.3295 3.8854
49 1 2.1764 -4.2749 -0.9487
50 1 3.1586 -3.5538 0.3999
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001277344198.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:46:13
Heat of formation + Delta-G solvation = 87.069041 kcal
Electronic energy + Delta-G solvation = -31942.843233 eV
Core-core repulsion = 27972.802191 eV
Total energy + Delta-G solvation = -3970.041042 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.13617 -41.56635 -40.00802 -38.73296 -37.08741 -34.62854 -33.30563 -31.99500
-31.15524 -30.79081 -30.54301 -27.52880 -26.92071 -26.65465 -24.51877 -24.32469
-22.65427 -22.24255 -21.80820 -20.47851 -20.19993 -19.23897 -18.89684 -18.77244
-17.82301 -17.23356 -16.94915 -16.51043 -16.22311 -15.93449 -15.85538 -15.48635
-15.01381 -14.89150 -14.78669 -14.32188 -14.25361 -14.14017 -14.02936 -13.78293
-13.45234 -13.37325 -13.21263 -13.07250 -12.83564 -12.73767 -12.64914 -12.55965
-12.48505 -12.25625 -12.13315 -11.58621 -11.44898 -11.35418 -11.19344 -10.95561
-10.84800 -10.61481 -10.49263 -10.36855 -9.57583 -9.56098 -9.24730 -8.14260
-6.27292 1.05878 1.44224 1.44841 1.52052 1.54078 1.85323 1.95963
2.11112 2.43665 2.76024 3.10924 3.14330 3.41823 3.68383 3.74577
3.79599 3.85906 3.96513 4.01513 4.25793 4.28758 4.33779 4.40123
4.47011 4.48498 4.52734 4.56980 4.58240 4.61344 4.68708 4.78514
4.83024 4.83762 4.86813 4.93315 4.94613 4.97288 4.99714 5.06851
5.10106 5.16311 5.20023 5.30281 5.37661 5.57347 5.74924 5.79280
6.02211 6.16264 6.21414 6.55018 6.78521 6.83763 6.88669 7.18113
7.41897 8.92996
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007182 B = 0.005368 C = 0.003624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3897.535822 B = 5214.855284 C = 7725.134103
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.026 3.974
3 Si 0.954 3.046
4 H -0.287 1.287
5 H -0.267 1.267
6 H -0.274 1.274
7 C -0.536 4.536
8 H 0.063 0.937
9 C 0.036 3.964
10 C 0.129 3.871
11 N -0.632 5.632
12 C 0.552 3.448
13 O -0.601 6.601
14 C -0.196 4.196
15 H 0.134 0.866
16 C -0.121 4.121
17 C -0.088 4.088
18 C -0.074 4.074
19 C 0.073 3.927
20 N -0.516 5.516
21 C 0.134 3.866
22 C 0.064 3.936
23 C -0.272 4.272
24 C 0.066 3.934
25 N -0.480 5.480
26 H 0.445 0.555
27 N -0.332 5.332
28 C 0.052 3.948
29 C -0.064 4.064
30 C 0.103 3.897
31 H 0.261 0.739
32 H 0.026 0.974
33 H 0.076 0.924
34 H 0.054 0.946
35 H 0.086 0.914
36 H 0.138 0.862
37 H 0.033 0.967
38 H 0.087 0.913
39 H 0.059 0.941
40 H 0.008 0.992
41 H 0.123 0.877
42 H 0.022 0.978
43 H 0.170 0.830
44 H 0.221 0.779
45 H 0.105 0.895
46 H 0.013 0.987
47 H 0.100 0.900
48 H 0.094 0.906
49 H 0.054 0.946
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.659 -8.317 2.530 17.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.175 4.175
3 Si 0.779 3.221
4 H -0.213 1.213
5 H -0.192 1.192
6 H -0.199 1.199
7 C -0.574 4.574
8 H 0.081 0.919
9 C 0.017 3.983
10 C 0.007 3.993
11 N -0.365 5.365
12 C 0.344 3.656
13 O -0.485 6.485
14 C -0.216 4.216
15 H 0.152 0.848
16 C -0.158 4.158
17 C -0.089 4.089
18 C -0.111 4.111
19 C -0.056 4.056
20 N -0.241 5.241
21 C 0.005 3.995
22 C -0.103 4.103
23 C -0.302 4.302
24 C -0.081 4.081
25 N -0.189 5.189
26 H 0.290 0.710
27 N -0.158 5.158
28 C -0.075 4.075
29 C -0.102 4.102
30 C -0.019 4.019
31 H 0.070 0.930
32 H 0.044 0.956
33 H 0.094 0.906
34 H 0.072 0.928
35 H 0.105 0.895
36 H 0.156 0.844
37 H 0.052 0.948
38 H 0.105 0.895
39 H 0.078 0.922
40 H 0.027 0.973
41 H 0.141 0.859
42 H 0.041 0.959
43 H 0.187 0.813
44 H 0.238 0.762
45 H 0.123 0.877
46 H 0.031 0.969
47 H 0.118 0.882
48 H 0.112 0.888
49 H 0.072 0.928
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -13.770 -8.834 2.130 16.498
hybrid contribution 1.070 1.676 -0.831 2.155
sum -12.700 -7.158 1.299 14.636
Atomic orbital electron populations
1.70107 1.07133 1.27440 1.49481 1.25710 0.95532 1.02199 0.94085
0.85688 0.78398 0.79042 0.78967 1.21262 1.19161 1.19915 1.21178
0.93136 0.90648 1.52411 0.91874 1.20247 0.93683 0.91715 0.92702
1.23335 0.98516 0.77004 1.00469 1.50298 1.41495 1.05022 1.39639
1.19972 0.82431 0.80678 0.82485 1.90584 1.58012 1.41279 1.58613
1.22369 0.94757 1.05051 0.99437 0.84779 1.23108 0.99407 0.89331
1.03984 1.21623 0.89784 1.01852 0.95608 1.21127 0.99846 0.96885
0.93276 1.21890 0.91296 0.95237 0.97169 1.62046 1.29090 1.30240
1.02736 1.20540 1.01252 0.90765 0.86959 1.22375 0.92857 0.98937
0.96082 1.21711 1.01179 1.14670 0.92602 1.23307 0.87087 0.98059
0.99695 1.46510 1.11426 1.53465 1.07477 0.70971 1.77616 1.23571
1.25235 0.89343 1.22245 0.99990 0.97400 0.87894 1.21265 0.96279
0.95269 0.97352 1.23393 0.94719 0.92856 0.90913 0.93017 0.95572
0.90600 0.92788 0.89510 0.84357 0.94828 0.89466 0.92236 0.97340
0.85926 0.95934 0.81270 0.76237 0.87712 0.96877 0.88192 0.88784
0.92792 0.89825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -51.02 13.27 21.45 0.28 -50.73 16
2 C 0.03 1.39 5.46 84.65 0.46 1.85 16
3 Si 0.95 42.16 29.54 68.60 2.03 44.19 16
4 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16
5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16
6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
7 C -0.54 -28.41 8.77 25.60 0.22 -28.19 16
8 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16
9 C 0.04 1.80 3.62 -10.88 -0.04 1.76 16
10 C 0.13 5.81 7.90 86.48 0.68 6.49 16
11 N -0.63 -27.63 3.61 -836.81 -3.02 -30.64 16
12 C 0.55 23.07 6.23 87.66 0.55 23.61 16
13 O -0.60 -28.68 16.89 -3.05 -0.05 -28.73 16
14 C -0.20 -6.19 5.63 -11.60 -0.07 -6.25 16
15 H 0.13 3.78 8.14 -2.39 -0.02 3.77 16
16 C -0.12 -3.08 9.51 30.52 0.29 -2.79 16
17 C -0.09 -2.40 2.02 -52.20 -0.11 -2.50 16
18 C -0.07 -2.39 5.52 30.75 0.17 -2.23 16
19 C 0.07 2.60 4.99 86.41 0.43 3.03 16
20 N -0.52 -14.94 4.73 -900.22 -4.26 -19.20 16
21 C 0.13 3.98 5.83 85.56 0.50 4.48 16
22 C 0.06 2.00 5.18 43.10 0.22 2.23 16
23 C -0.27 -6.38 10.74 21.99 0.24 -6.14 16
24 C 0.07 1.29 11.99 83.54 1.00 2.29 16
25 N -0.48 -12.63 7.36 -57.59 -0.42 -13.05 16
26 H 0.45 9.36 8.96 -213.33 -1.91 7.45 16
27 N -0.33 -12.24 11.34 -47.38 -0.54 -12.78 16
28 C 0.05 1.31 5.45 86.41 0.47 1.78 16
29 C -0.06 -1.33 5.87 30.76 0.18 -1.15 16
30 C 0.10 4.70 8.39 86.48 0.73 5.43 16
31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16
32 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16
33 H 0.08 3.33 8.09 -2.39 -0.02 3.31 16
34 H 0.05 2.50 6.53 -2.39 -0.02 2.48 16
35 H 0.09 2.54 7.76 -2.39 -0.02 2.52 16
36 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16
37 H 0.03 1.31 6.69 -2.39 -0.02 1.29 16
38 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
39 H 0.06 2.33 5.56 -2.39 -0.01 2.32 16
40 H 0.01 0.37 6.85 -2.38 -0.02 0.36 16
41 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16
42 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16
43 H 0.17 2.97 8.06 -2.92 -0.02 2.95 16
44 H 0.22 1.92 8.06 -2.91 -0.02 1.89 16
45 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16
46 H 0.01 0.41 7.48 -2.39 -0.02 0.39 16
47 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
48 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16
49 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16
50 H 0.08 3.59 8.09 -2.39 -0.02 3.57 16
Total: -1.00 -73.40 400.62 -1.00 -74.40
By element:
Atomic # 1 Polarization: 33.81 SS G_CDS: -0.96 Total: 32.85 kcal
Atomic # 6 Polarization: -2.22 SS G_CDS: 5.93 Total: 3.71 kcal
Atomic # 7 Polarization: -118.46 SS G_CDS: -7.95 Total: -126.41 kcal
Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal
Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal
Total: -73.40 -1.00 -74.40 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277344198.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.467 kcal
(2) G-P(sol) polarization free energy of solvation -73.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds