Wall clock time and date at job start Wed Apr 1 2020 02:46:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86797 * 119.99926 * 2 1
4 4 H 1.48499 * 109.47078 * 240.00004 * 3 2 1
5 5 H 1.48502 * 109.47356 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47122 * 120.00317 * 3 2 1
7 7 C 1.37877 * 120.00210 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00651 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99962 * 0.02562 * 7 2 1
10 10 C 1.53942 * 113.74273 * 180.02562 * 9 7 2
11 11 N 1.47583 * 86.24138 * 137.89169 * 10 9 7
12 12 C 1.34776 * 134.49248 * 155.41963 * 11 10 9
13 13 O 1.21284 * 120.00044 * 0.02562 * 12 11 10
14 14 C 1.50699 * 120.00178 * 180.02562 * 12 11 10
15 15 H 1.08999 * 115.55151 * 32.28946 * 14 12 11
16 16 C 1.53035 * 117.50693 * 177.99313 * 14 12 11
17 17 C 1.52733 * 59.94836 * 107.46912 * 16 14 12
18 18 C 1.53219 * 117.84697 * 107.73812 * 17 16 14
19 19 C 1.53262 * 108.62153 * 197.00354 * 18 17 16
20 20 N 1.46803 * 109.44865 * 304.41278 * 19 18 17
21 21 C 1.46901 * 111.00125 * 189.19908 * 20 19 18
22 22 C 1.50699 * 109.46945 * 45.29885 * 21 20 19
23 23 C 1.39871 * 125.89885 * 95.00480 * 22 21 20
24 24 C 1.35317 * 107.92255 * 179.97438 * 23 22 21
25 25 N 1.34953 * 107.74129 * 359.97438 * 24 23 22
26 26 H 0.96997 * 126.03361 * 179.97438 * 25 24 23
27 27 N 1.30839 * 125.89642 * 274.69011 * 22 21 20
28 28 C 1.46810 * 111.57705 * 64.82669 * 20 19 18
29 29 C 1.53223 * 117.84174 * 252.26108 * 17 16 14
30 30 C 1.47813 * 90.92533 * 335.45981 * 11 10 9
31 31 H 0.96999 * 120.00324 * 359.97438 * 1 2 3
32 32 H 1.08998 * 112.94212 * 48.40271 * 9 7 2
33 33 H 1.09002 * 113.76981 * 252.24869 * 10 9 7
34 34 H 1.09001 * 113.77090 * 23.53719 * 10 9 7
35 35 H 1.09006 * 117.50530 * 214.94124 * 16 14 12
36 36 H 1.09002 * 117.50544 * 359.96088 * 16 14 12
37 37 H 1.09001 * 109.60974 * 316.75230 * 18 17 16
38 38 H 1.09002 * 109.60946 * 77.26315 * 18 17 16
39 39 H 1.09000 * 109.47586 * 184.41615 * 19 18 17
40 40 H 1.09005 * 109.47525 * 64.40953 * 19 18 17
41 41 H 1.08994 * 109.47505 * 165.30546 * 21 20 19
42 42 H 1.09000 * 109.46852 * 285.30194 * 21 20 19
43 43 H 1.07995 * 126.03807 * 359.97438 * 23 22 21
44 44 H 1.07990 * 126.12929 * 179.97438 * 24 23 22
45 45 H 1.09000 * 109.47652 * 175.18189 * 28 20 19
46 46 H 1.08999 * 109.48077 * 55.16042 * 28 20 19
47 47 H 1.08996 * 109.61288 * 282.72652 * 29 17 16
48 48 H 1.08997 * 109.61492 * 43.25597 * 29 17 16
49 49 H 1.08995 * 113.66518 * 270.23660 * 30 11 10
50 50 H 1.08997 * 113.93802 * 138.88044 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1029 1.6964 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.1615 -3.7405 0.0018
11 7 1.2226 -4.3082 0.9888
12 6 0.8873 -5.5589 1.3628
13 8 1.4169 -6.5128 0.8331
14 6 -0.1456 -5.7721 2.4392
15 1 -0.9363 -5.0234 2.4870
16 6 -0.5171 -7.2155 2.7863
17 6 0.3243 -6.3880 3.7559
18 6 -0.3414 -5.9046 5.0485
19 6 0.5068 -4.7749 5.6429
20 7 1.8837 -5.2465 5.8346
21 6 2.6723 -4.2715 6.5999
22 6 1.8691 -3.7924 7.7815
23 6 1.9315 -4.3096 9.0796
24 6 1.0617 -3.6133 9.8475
25 7 0.4703 -2.6880 9.0632
26 1 -0.1995 -2.0453 9.3447
27 7 0.9970 -2.8171 7.7716
28 6 2.5310 -5.5577 4.5542
29 6 1.8102 -6.7367 3.8913
30 6 0.7982 -2.9534 1.4001
31 1 -0.4850 0.8400 0.0004
32 1 0.4618 -2.5342 -0.7504
33 1 2.1769 -4.2751 -0.9480
34 1 3.1585 -3.5537 0.4008
35 1 -1.5521 -7.4164 3.0630
36 1 -0.0149 -8.0110 2.2357
37 1 -1.3423 -5.5337 4.8279
38 1 -0.4024 -6.7290 5.7590
39 1 0.0888 -4.4735 6.6034
40 1 0.5056 -3.9231 4.9627
41 1 3.5903 -4.7424 6.9514
42 1 2.9204 -3.4237 5.9614
43 1 2.5625 -5.1212 9.4105
44 1 0.8744 -3.7700 10.8994
45 1 3.5741 -5.8213 4.7289
46 1 2.4807 -4.6870 3.9003
47 1 1.9220 -7.6278 4.5090
48 1 2.2352 -6.9170 2.9040
49 1 1.3942 -2.5358 2.2116
50 1 -0.2746 -2.8576 1.5673
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001277344199.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:46:17
Heat of formation + Delta-G solvation = 105.599605 kcal
Electronic energy + Delta-G solvation = -30902.633147 eV
Core-core repulsion = 26933.395650 eV
Total energy + Delta-G solvation = -3969.237497 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.41997 -40.17712 -38.65519 -37.19377 -35.78095 -32.65647 -32.48367 -30.93756
-30.11832 -29.87278 -29.12552 -26.04400 -25.39328 -25.06239 -23.38529 -22.94828
-21.69782 -21.56728 -20.15505 -19.67328 -18.79072 -18.25481 -17.73856 -16.82891
-16.38272 -16.20378 -15.15266 -15.09707 -14.89822 -14.83384 -14.54534 -14.31606
-14.02821 -13.83875 -13.69503 -13.30102 -13.21666 -12.86657 -12.61477 -12.41297
-12.19096 -11.92960 -11.86098 -11.58547 -11.54870 -11.43996 -11.22863 -11.04848
-10.92158 -10.80912 -10.79983 -10.45216 -10.39386 -9.88786 -9.72500 -9.58261
-9.50454 -9.26163 -8.91800 -8.88366 -8.57152 -8.25029 -7.80283 -6.17200
-4.22758 1.68675 2.53713 2.69144 3.02024 3.25647 3.30899 3.33004
3.57070 3.97893 4.11530 4.34119 4.44806 4.61862 4.72081 4.83204
4.94780 4.97882 5.02295 5.13410 5.28276 5.32727 5.41820 5.48326
5.55045 5.59412 5.61903 5.68916 5.71344 5.84059 5.85612 5.91326
5.99499 6.05760 6.10402 6.15204 6.21969 6.26468 6.31898 6.33190
6.40955 6.41275 6.42342 6.62110 6.69222 6.86162 7.02997 7.07831
7.11426 7.49765 7.56184 7.80227 8.18191 8.56367 8.80319 8.84695
9.44003 10.92438
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.008202 B = 0.003711 C = 0.002801
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3412.959039 B = 7544.327887 C = 9992.299764
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.069 3.931
3 Si 0.894 3.106
4 H -0.275 1.275
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.520 4.520
8 H 0.062 0.938
9 C 0.034 3.966
10 C 0.103 3.897
11 N -0.635 5.635
12 C 0.558 3.442
13 O -0.568 6.568
14 C -0.176 4.176
15 H 0.116 0.884
16 C -0.143 4.143
17 C -0.092 4.092
18 C -0.075 4.075
19 C 0.056 3.944
20 N -0.530 5.530
21 C 0.131 3.869
22 C 0.083 3.917
23 C -0.255 4.255
24 C 0.051 3.949
25 N -0.478 5.478
26 H 0.438 0.562
27 N -0.284 5.284
28 C 0.060 3.940
29 C -0.084 4.084
30 C 0.108 3.892
31 H 0.264 0.736
32 H 0.064 0.936
33 H 0.060 0.940
34 H 0.072 0.928
35 H 0.097 0.903
36 H 0.106 0.894
37 H 0.067 0.933
38 H 0.075 0.925
39 H 0.079 0.921
40 H 0.039 0.961
41 H 0.095 0.905
42 H 0.052 0.948
43 H 0.148 0.852
44 H 0.175 0.825
45 H 0.075 0.925
46 H 0.040 0.960
47 H 0.075 0.925
48 H 0.083 0.917
49 H 0.071 0.929
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.089 -9.356 19.319 21.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.134 4.134
3 Si 0.721 3.279
4 H -0.200 1.200
5 H -0.212 1.212
6 H -0.201 1.201
7 C -0.558 4.558
8 H 0.080 0.920
9 C 0.015 3.985
10 C -0.019 4.019
11 N -0.367 5.367
12 C 0.347 3.653
13 O -0.449 6.449
14 C -0.197 4.197
15 H 0.134 0.866
16 C -0.180 4.180
17 C -0.093 4.093
18 C -0.113 4.113
19 C -0.072 4.072
20 N -0.255 5.255
21 C 0.002 3.998
22 C -0.083 4.083
23 C -0.285 4.285
24 C -0.096 4.096
25 N -0.186 5.186
26 H 0.282 0.718
27 N -0.109 5.109
28 C -0.068 4.068
29 C -0.122 4.122
30 C -0.014 4.014
31 H 0.074 0.926
32 H 0.082 0.918
33 H 0.078 0.922
34 H 0.090 0.910
35 H 0.116 0.884
36 H 0.124 0.876
37 H 0.085 0.915
38 H 0.094 0.906
39 H 0.098 0.902
40 H 0.057 0.943
41 H 0.113 0.887
42 H 0.070 0.930
43 H 0.166 0.834
44 H 0.192 0.808
45 H 0.094 0.906
46 H 0.058 0.942
47 H 0.094 0.906
48 H 0.101 0.899
49 H 0.090 0.910
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -0.605 -9.452 18.663 20.928
hybrid contribution 0.290 1.585 0.404 1.661
sum -0.314 -7.867 19.066 20.628
Atomic orbital electron populations
1.69934 1.06048 1.27190 1.49143 1.25006 0.94843 0.99311 0.94283
0.86622 0.79639 0.82769 0.78821 1.20034 1.21220 1.20097 1.20932
0.92984 0.89741 1.52143 0.91981 1.20489 0.94333 0.91320 0.92348
1.23470 0.94331 0.93555 0.90499 1.50396 1.41851 1.04710 1.39781
1.19176 0.82341 0.81730 0.82007 1.90599 1.56677 1.40606 1.57058
1.22334 1.01611 0.98775 0.96998 0.86634 1.22998 1.00311 0.93113
1.01576 1.21460 0.96054 1.02202 0.89553 1.21223 0.97365 0.98295
0.94368 1.22173 0.88331 0.95947 1.00716 1.61937 1.02392 1.42270
1.18926 1.20488 0.94653 0.94274 0.90377 1.22143 0.96319 0.94062
0.95814 1.21418 1.07304 1.06832 0.92937 1.22579 0.96507 0.92509
0.98019 1.46389 1.35200 1.29854 1.07176 0.71799 1.77454 1.14398
1.20838 0.98228 1.22082 0.97838 0.98016 0.88864 1.21298 0.91645
0.97775 1.01466 1.23698 0.99130 0.76740 1.01840 0.92614 0.91783
0.92165 0.90978 0.88417 0.87600 0.91461 0.90627 0.90233 0.94258
0.88714 0.92965 0.83443 0.80812 0.90616 0.94200 0.90622 0.89854
0.91035 0.92057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.33 13.27 55.43 0.74 -23.60 16
2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16
3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16
4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
7 C -0.52 -13.39 8.77 -34.44 -0.30 -13.69 16
8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16
9 C 0.03 0.81 3.62 -90.83 -0.33 0.49 16
10 C 0.10 2.20 8.38 -2.97 -0.02 2.17 16
11 N -0.63 -13.22 3.62 -177.42 -0.64 -13.86 16
12 C 0.56 11.14 6.79 -10.99 -0.07 11.07 16
13 O -0.57 -12.64 15.71 5.55 0.09 -12.55 16
14 C -0.18 -2.88 5.64 -91.88 -0.52 -3.39 16
15 H 0.12 1.86 8.14 -51.93 -0.42 1.43 16
16 C -0.14 -1.97 9.51 -26.85 -0.26 -2.22 16
17 C -0.09 -1.28 2.02 -154.54 -0.31 -1.59 16
18 C -0.07 -0.93 5.87 -26.48 -0.16 -1.09 16
19 C 0.06 0.76 5.00 -3.74 -0.02 0.74 16
20 N -0.53 -6.73 4.73 -235.89 -1.12 -7.85 16
21 C 0.13 1.55 5.83 -4.98 -0.03 1.52 16
22 C 0.08 0.99 5.17 -82.40 -0.43 0.56 16
23 C -0.26 -2.42 10.74 -40.01 -0.43 -2.85 16
24 C 0.05 0.38 11.99 -17.22 -0.21 0.18 16
25 N -0.48 -4.29 7.36 30.44 0.22 -4.06 16
26 H 0.44 2.60 8.96 -182.61 -1.64 0.96 16
27 N -0.28 -3.65 11.36 33.67 0.38 -3.27 16
28 C 0.06 0.81 5.45 -3.73 -0.02 0.79 16
29 C -0.08 -1.18 5.52 -26.48 -0.15 -1.33 16
30 C 0.11 2.34 8.18 -2.84 -0.02 2.32 16
31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
32 H 0.06 1.66 8.13 -51.93 -0.42 1.24 16
33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16
35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16
36 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16
37 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16
38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16
39 H 0.08 1.09 5.57 -51.93 -0.29 0.80 16
40 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16
41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
42 H 0.05 0.68 8.08 -51.93 -0.42 0.27 16
43 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16
44 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16
45 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16
46 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16
47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
48 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16
49 H 0.07 1.56 8.09 -51.93 -0.42 1.14 16
50 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
LS Contribution 403.04 15.07 6.07 6.07
Total: -1.00 -31.11 403.04 -11.99 -43.10
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: -9.35 Total: 5.31 kcal
Atomic # 6 Polarization: -1.24 SS G_CDS: -3.37 Total: -4.60 kcal
Atomic # 7 Polarization: -52.22 SS G_CDS: -0.42 Total: -52.64 kcal
Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal
Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -31.11 -11.99 -43.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277344199.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.699 kcal
(2) G-P(sol) polarization free energy of solvation -31.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds