Wall clock time and date at job start Wed Apr 1 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.08995 * 115.55483 * 34.35939 * 14 12 11 16 16 C 1.53148 * 117.51766 * 248.61026 * 14 12 11 17 17 C 1.52330 * 117.51929 * 180.18425 * 14 12 11 18 18 C 1.53289 * 128.80227 * 349.56183 * 17 14 12 19 19 N 1.48102 * 85.92294 * 196.86075 * 18 17 14 20 20 C 1.46896 * 111.00203 * 137.12936 * 19 18 17 21 21 C 1.53001 * 109.47367 * 90.40739 * 20 19 18 22 22 C 1.53007 * 109.47190 * 180.02562 * 21 20 19 23 23 N 1.46500 * 109.46937 * 180.02562 * 22 21 20 24 24 C 1.34952 * 126.03318 * 124.99898 * 23 22 21 25 25 C 1.35311 * 107.74401 * 179.97438 * 24 23 22 26 26 C 1.39872 * 107.91915 * 0.02562 * 25 24 23 27 27 N 1.30838 * 108.20427 * 359.73735 * 26 25 24 28 28 C 1.48095 * 90.96051 * 24.14656 * 19 18 17 29 29 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 30 30 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 31 31 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 32 32 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 33 33 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 34 34 H 1.09000 * 117.51503 * 359.97438 * 16 14 12 35 35 H 1.08996 * 117.51605 * 145.12116 * 16 14 12 36 36 H 1.09004 * 113.80030 * 311.10787 * 18 17 14 37 37 H 1.09000 * 113.79983 * 82.60164 * 18 17 14 38 38 H 1.08998 * 109.47230 * 210.41085 * 20 19 18 39 39 H 1.09008 * 109.47220 * 330.41089 * 20 19 18 40 40 H 1.08998 * 109.47229 * 300.00347 * 21 20 19 41 41 H 1.08995 * 109.46818 * 60.00257 * 21 20 19 42 42 H 1.09006 * 109.46976 * 299.99996 * 22 21 20 43 43 H 1.08998 * 109.46760 * 59.99980 * 22 21 20 44 44 H 1.07998 * 126.12533 * 359.96151 * 24 23 22 45 45 H 1.08002 * 126.04566 * 180.02562 * 25 24 23 46 46 H 1.08004 * 125.89791 * 179.97438 * 26 25 24 47 47 H 1.08995 * 113.80326 * 221.59755 * 28 19 18 48 48 H 1.09007 * 113.90335 * 90.11518 * 28 19 18 49 49 H 1.08998 * 113.77108 * 221.06070 * 29 11 10 50 50 H 1.08991 * 113.87349 * 89.66683 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9607 -5.0368 2.4609 16 6 0.3244 -6.3413 3.7733 17 6 -0.4888 -7.2037 2.8166 18 6 -0.0825 -8.5040 2.1139 19 7 -1.1665 -9.1414 2.8963 20 6 -1.9409 -10.0707 2.0629 21 6 -1.3221 -11.4675 2.1465 22 6 -2.1283 -12.4353 1.2779 23 7 -1.5361 -13.7729 1.3584 24 6 -2.1789 -14.9057 1.7116 25 6 -1.2848 -15.9200 1.6613 26 6 -0.0533 -15.3888 1.2643 27 7 -0.2041 -14.1027 1.0773 28 6 -1.8652 -7.8428 3.0331 29 6 2.1616 -3.7405 0.0012 30 1 -0.4850 -0.8401 -0.0004 31 1 0.4618 -2.5341 -0.7504 32 1 1.3949 -2.5362 2.2115 33 1 -0.2743 -2.8598 1.5671 34 1 1.3861 -6.5662 3.8749 35 1 -0.1708 -5.9884 4.6779 36 1 -0.2615 -8.4975 1.0387 37 1 0.9154 -8.8538 2.3786 38 1 -2.9701 -10.1073 2.4197 39 1 -1.9270 -9.7286 1.0280 40 1 -0.2928 -11.4309 1.7897 41 1 -1.3360 -11.8097 3.1812 42 1 -3.1578 -12.4720 1.6344 43 1 -2.1140 -12.0929 0.2432 44 1 -3.2204 -14.9878 1.9856 45 1 -1.4863 -16.9567 1.8876 46 1 0.8629 -15.9450 1.1310 47 1 -2.2797 -7.6688 4.0261 48 1 -2.5763 -7.6374 2.2330 49 1 2.1766 -4.2747 -0.9488 50 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278018560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:18 Heat of formation + Delta-G solvation = 120.151425 kcal Electronic energy + Delta-G solvation = -28630.747762 eV Core-core repulsion = 24662.141280 eV Total energy + Delta-G solvation = -3968.606483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02301 -41.77939 -40.70502 -38.81978 -36.77671 -35.27283 -34.85573 -32.17449 -30.95382 -30.73055 -28.00672 -27.29772 -27.11696 -26.82862 -24.65930 -24.53786 -22.57799 -22.10377 -21.83168 -21.40438 -20.15285 -19.37145 -19.03852 -18.18159 -18.17109 -17.11965 -16.87689 -16.64457 -16.44673 -16.20970 -15.72301 -15.59023 -15.44914 -15.30466 -14.94045 -14.55530 -14.39631 -14.19596 -13.91664 -13.70876 -13.61050 -13.50204 -13.32734 -13.18581 -13.00631 -12.91858 -12.79149 -12.45932 -12.42270 -11.90893 -11.88367 -11.75052 -11.50595 -11.50221 -11.34444 -11.26077 -11.04286 -10.56704 -10.46171 -10.39847 -9.87654 -9.64474 -9.50744 -8.61865 -6.35355 1.00437 1.40791 1.61220 1.63762 1.66537 1.80739 1.86212 1.95978 2.52420 2.61180 2.98409 3.07272 3.16953 3.43061 3.53779 3.65233 3.80389 3.90210 3.96236 4.00572 4.06182 4.10663 4.24399 4.26678 4.31898 4.36401 4.40815 4.42126 4.43010 4.49916 4.55906 4.59976 4.65736 4.67956 4.70748 4.73257 4.78244 4.87132 4.89301 4.93185 4.96769 5.01993 5.12859 5.15479 5.32062 5.37140 5.75020 5.98284 5.99500 6.18381 6.18470 6.57651 6.78611 6.78652 7.08742 7.44122 8.78583 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.001574 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.245066 B =17782.338645 C =18192.952067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.019 4.019 3 Si 1.113 2.887 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.606 4.606 8 H 0.054 0.946 9 C 0.001 3.999 10 C 0.116 3.884 11 N -0.638 5.638 12 C 0.548 3.452 13 O -0.590 6.590 14 C -0.180 4.180 15 H 0.136 0.864 16 C -0.097 4.097 17 C -0.138 4.138 18 C 0.060 3.940 19 N -0.483 5.483 20 C 0.025 3.975 21 C -0.109 4.109 22 C 0.132 3.868 23 N -0.380 5.380 24 C 0.054 3.946 25 C -0.289 4.289 26 C 0.029 3.971 27 N -0.348 5.348 28 C 0.057 3.943 29 C 0.114 3.886 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.211 0.789 45 H 0.168 0.832 46 H 0.198 0.802 47 H 0.116 0.884 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -24.659 8.900 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.219 4.219 3 Si 0.935 3.065 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.212 1.212 7 C -0.643 4.643 8 H 0.073 0.927 9 C -0.019 4.019 10 C -0.006 4.006 11 N -0.371 5.371 12 C 0.340 3.660 13 O -0.472 6.472 14 C -0.201 4.201 15 H 0.154 0.846 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.068 4.068 19 N -0.205 5.205 20 C -0.104 4.104 21 C -0.147 4.147 22 C 0.011 3.989 23 N -0.163 5.163 24 C -0.092 4.092 25 C -0.319 4.319 26 C -0.156 4.156 27 N -0.170 5.170 28 C -0.070 4.070 29 C -0.008 4.008 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.158 0.842 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.228 0.772 45 H 0.185 0.815 46 H 0.214 0.786 47 H 0.134 0.866 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.244 -22.894 8.906 26.247 hybrid contribution 0.047 -1.949 -1.048 2.213 sum -9.197 -24.842 7.858 27.631 Atomic orbital electron populations 1.70927 1.07747 1.30252 1.47480 1.27128 0.96506 1.06012 0.92248 0.82959 0.74148 0.71567 0.77824 1.20071 1.19450 1.21222 1.22104 0.94440 0.91812 1.55989 0.92731 1.20602 0.94881 0.93227 0.93162 1.23548 0.99565 0.77312 1.00222 1.50338 1.41878 1.05022 1.39910 1.20009 0.82682 0.80745 0.82607 1.90612 1.57724 1.40962 1.57895 1.22082 1.01060 0.99663 0.97337 0.84641 1.22855 1.00233 0.98270 0.92036 1.22744 0.99448 0.89037 1.02707 1.23255 0.96895 0.90841 0.95805 1.68480 1.07248 1.08046 1.36765 1.22614 0.98976 0.92453 0.96388 1.21534 0.99182 0.93868 1.00152 1.21885 0.97968 0.77360 1.01643 1.48958 1.06957 1.08388 1.52007 1.23283 1.00983 0.85522 0.99373 1.21892 0.92790 1.01671 1.15511 1.24386 1.00732 0.91511 0.98941 1.77345 0.97213 1.17217 1.25265 1.23588 0.92505 0.86904 1.04037 1.23223 0.94438 0.92024 0.91101 0.92958 0.95018 0.90082 0.91195 0.89200 0.84196 0.92095 0.91406 0.87723 0.93693 0.93836 0.91364 0.84723 0.90035 0.77219 0.81464 0.78562 0.86576 0.89574 0.92191 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.86 13.65 21.45 0.29 -51.57 16 2 C -0.02 -0.99 5.46 84.66 0.46 -0.53 16 3 Si 1.11 46.38 29.90 68.60 2.05 48.43 16 4 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.61 -31.11 8.77 25.60 0.22 -30.89 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.00 0.03 3.09 -10.88 -0.03 -0.01 16 10 C 0.12 4.72 8.12 86.48 0.70 5.42 16 11 N -0.64 -25.75 3.61 -836.80 -3.02 -28.77 16 12 C 0.55 21.04 7.84 87.66 0.69 21.73 16 13 O -0.59 -25.98 15.86 -3.03 -0.05 -26.03 16 14 C -0.18 -5.13 5.94 -11.71 -0.07 -5.20 16 15 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 16 C -0.10 -2.26 10.24 30.42 0.31 -1.95 16 17 C -0.14 -3.39 3.03 -52.40 -0.16 -3.55 16 18 C 0.06 1.66 6.39 86.17 0.55 2.21 16 19 N -0.48 -10.12 6.15 -918.36 -5.65 -15.77 16 20 C 0.02 0.39 4.80 86.30 0.41 0.81 16 21 C -0.11 -1.90 5.71 30.60 0.17 -1.72 16 22 C 0.13 1.73 6.51 86.38 0.56 2.29 16 23 N -0.38 -6.87 3.68 -348.05 -1.28 -8.15 16 24 C 0.05 0.70 11.45 83.54 0.96 1.65 16 25 C -0.29 -4.12 10.80 21.99 0.24 -3.88 16 26 C 0.03 0.55 12.03 85.24 1.02 1.58 16 27 N -0.35 -8.43 12.42 -57.02 -0.71 -9.14 16 28 C 0.06 1.03 7.96 86.17 0.69 1.71 16 29 C 0.11 4.87 8.39 86.48 0.73 5.60 16 30 H 0.26 14.52 7.04 -92.70 -0.65 13.86 16 31 H 0.03 1.62 7.61 -2.39 -0.02 1.60 16 32 H 0.08 3.28 8.09 -2.39 -0.02 3.26 16 33 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 1.87 7.35 -2.39 -0.02 1.85 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16 39 H 0.04 0.77 7.38 -2.38 -0.02 0.75 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.13 0.68 8.07 -2.38 -0.02 0.66 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.37 7.93 -2.38 -0.02 1.35 16 49 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.08 3.33 8.09 -2.39 -0.02 3.31 16 Total: -1.00 -71.56 416.18 0.13 -71.43 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 1.03 Total: 24.29 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 7.46 Total: -4.73 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -10.36 Total: -113.39 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.05 Total: 48.43 kcal Total: -71.56 0.13 -71.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278018560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.584 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds