Wall clock time and date at job start Wed Apr 1 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00174 * 2 1 4 4 H 1.48498 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47461 * 300.00151 * 3 2 1 6 6 H 1.48499 * 109.47245 * 60.00575 * 3 2 1 7 7 C 1.37881 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00014 * 359.71764 * 7 2 1 10 10 C 1.53938 * 113.74378 * 276.95348 * 9 7 2 11 11 N 1.47579 * 86.11745 * 222.04795 * 10 9 7 12 12 C 1.34776 * 134.48984 * 204.63956 * 11 10 9 13 13 O 1.21289 * 119.99666 * 180.02562 * 12 11 10 14 14 C 1.50694 * 120.00457 * 359.97438 * 12 11 10 15 15 C 1.53005 * 119.52569 * 109.30448 * 14 12 11 16 16 C 1.52997 * 60.54470 * 111.74183 * 15 14 12 17 17 H 1.09006 * 120.23218 * 248.54853 * 16 15 14 18 18 C 1.54379 * 118.13057 * 91.67274 * 16 15 14 19 19 N 1.48561 * 104.59133 * 272.76819 * 18 16 15 20 20 C 1.46901 * 111.00181 * 159.03693 * 19 18 16 21 21 C 1.52997 * 109.47507 * 184.33495 * 20 19 18 22 22 C 1.53002 * 109.47192 * 185.13044 * 21 20 19 23 23 N 1.46502 * 109.46999 * 180.02562 * 22 21 20 24 24 C 1.34944 * 126.03724 * 124.99959 * 23 22 21 25 25 C 1.35308 * 107.74762 * 179.97438 * 24 23 22 26 26 C 1.39871 * 107.92033 * 359.97438 * 25 24 23 27 27 N 1.30836 * 108.20057 * 359.74460 * 26 25 24 28 28 C 1.47693 * 104.66571 * 38.77099 * 19 18 16 29 29 C 1.47583 * 91.01337 * 24.63863 * 11 10 9 30 30 H 0.97006 * 119.99542 * 359.97438 * 1 2 3 31 31 H 1.09004 * 112.94385 * 48.69100 * 9 7 2 32 32 H 1.09000 * 113.76752 * 336.34820 * 10 9 7 33 33 H 1.09000 * 113.77476 * 107.74570 * 10 9 7 34 34 H 1.08999 * 117.44274 * 219.38836 * 15 14 12 35 35 H 1.09002 * 117.44087 * 4.09825 * 15 14 12 36 36 H 1.09003 * 110.41100 * 31.54315 * 18 16 15 37 37 H 1.08997 * 110.41397 * 153.87448 * 18 16 15 38 38 H 1.09004 * 109.47216 * 304.33910 * 20 19 18 39 39 H 1.09005 * 109.46833 * 64.33285 * 20 19 18 40 40 H 1.09001 * 109.47120 * 305.12851 * 21 20 19 41 41 H 1.08992 * 109.46850 * 65.13229 * 21 20 19 42 42 H 1.09001 * 109.46930 * 299.99923 * 22 21 20 43 43 H 1.09004 * 109.47293 * 59.99637 * 22 21 20 44 44 H 1.08007 * 126.12679 * 359.97438 * 24 23 22 45 45 H 1.07998 * 126.04454 * 180.02562 * 25 24 23 46 46 H 1.08004 * 125.90134 * 179.97438 * 26 25 24 47 47 H 1.08995 * 111.28026 * 202.24344 * 28 19 18 48 48 H 1.08992 * 109.12489 * 80.08684 * 28 19 18 49 49 H 1.09001 * 113.76436 * 221.05636 * 29 11 10 50 50 H 1.09006 * 113.86664 * 89.67650 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 0.0053 10 6 0.7992 -2.9478 1.4069 11 7 1.2206 -4.3022 0.9994 12 6 0.8821 -5.5506 1.3781 13 8 1.4097 -6.5078 0.8523 14 6 -0.1509 -5.7572 2.4556 15 6 -1.5263 -6.3155 2.0845 16 6 -0.5693 -7.1673 2.9207 17 1 -0.1231 -8.0673 2.4975 18 6 -0.6637 -7.0709 4.4586 19 7 0.2206 -5.9323 4.8172 20 6 -0.1249 -5.3936 6.1395 21 6 0.7318 -4.1589 6.4270 22 6 0.4645 -3.6735 7.8532 23 7 1.2844 -2.4910 8.1282 24 6 0.8320 -1.2925 8.5525 25 6 1.8999 -0.4727 8.6871 26 6 3.0443 -1.1950 8.3336 27 7 2.6771 -2.4067 8.0040 28 6 -0.0058 -4.9334 3.7531 29 6 2.1613 -3.7405 0.0107 30 1 -0.4850 0.8401 0.0004 31 1 0.4614 -2.5373 -0.7453 32 1 1.3958 -2.5271 2.2163 33 1 -0.2737 -2.8532 1.5740 34 1 -2.3937 -5.8913 2.5902 35 1 -1.6855 -6.6104 1.0473 36 1 -1.6897 -6.8664 4.7644 37 1 -0.3067 -7.9917 4.9198 38 1 -1.1789 -5.1160 6.1548 39 1 0.0624 -6.1511 6.9007 40 1 1.7859 -4.4157 6.3223 41 1 0.4784 -3.3685 5.7207 42 1 -0.5896 -3.4167 7.9579 43 1 0.7178 -4.4641 8.5596 44 1 -0.1981 -1.0340 8.7493 45 1 1.8736 0.5572 9.0112 46 1 4.0567 -0.8187 8.3362 47 1 0.8340 -4.2432 3.6733 48 1 -0.9270 -4.3901 3.9635 49 1 2.1759 -4.2789 -0.9370 50 1 3.1587 -3.5522 0.4083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278020339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:32 Heat of formation + Delta-G solvation = 120.587216 kcal Electronic energy + Delta-G solvation = -30189.581168 eV Core-core repulsion = 26220.993582 eV Total energy + Delta-G solvation = -3968.587585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20067 -40.60058 -38.77701 -36.96861 -35.82995 -33.70055 -32.67871 -30.75787 -29.89871 -29.66073 -28.22572 -26.43106 -25.32007 -25.11105 -23.69988 -22.52111 -21.36861 -21.00137 -20.76827 -20.48219 -19.55104 -18.08729 -17.39157 -16.84434 -16.50473 -16.16121 -15.60267 -15.35058 -14.93039 -14.75423 -14.54412 -14.37357 -14.18442 -14.06494 -13.52472 -13.44385 -13.21674 -12.92401 -12.83887 -12.50591 -12.36408 -12.26063 -12.13691 -11.75963 -11.56992 -11.53135 -11.28060 -11.22378 -11.02980 -10.96717 -10.78265 -10.67913 -10.48633 -10.38530 -10.01914 -9.54408 -9.52248 -9.28143 -8.92202 -8.69893 -8.59689 -8.56557 -7.84104 -6.19105 -4.24126 1.80361 2.37516 2.78503 2.95771 3.22479 3.31403 3.35254 3.49493 3.69185 3.71702 4.28534 4.32882 4.36638 4.50770 4.66384 4.69293 4.85408 4.86122 4.93388 4.97563 5.03956 5.10259 5.12281 5.15119 5.31185 5.36992 5.40974 5.47091 5.62264 5.64748 5.67767 5.81001 5.82966 5.91203 5.96963 6.04328 6.09445 6.16023 6.21803 6.30533 6.39694 6.55382 6.56818 6.61005 6.67075 6.83163 6.83776 6.91058 7.54899 7.61753 7.78856 8.16573 8.52068 8.79201 8.79874 9.42810 10.90567 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.005964 B = 0.004208 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4694.037844 B = 6652.829784 C =10502.059177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.107 3.893 11 N -0.633 5.633 12 C 0.571 3.429 13 O -0.564 6.564 14 C -0.162 4.162 15 C -0.117 4.117 16 C -0.134 4.134 17 H 0.126 0.874 18 C 0.065 3.935 19 N -0.513 5.513 20 C 0.052 3.948 21 C -0.133 4.133 22 C 0.138 3.862 23 N -0.372 5.372 24 C 0.051 3.949 25 C -0.275 4.275 26 C 0.043 3.957 27 N -0.291 5.291 28 C 0.080 3.920 29 C 0.103 3.897 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.172 0.828 45 H 0.146 0.854 46 H 0.182 0.818 47 H 0.093 0.907 48 H 0.048 0.952 49 H 0.061 0.939 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -6.541 17.305 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.015 4.015 11 N -0.365 5.365 12 C 0.360 3.640 13 O -0.445 6.445 14 C -0.166 4.166 15 C -0.155 4.155 16 C -0.153 4.153 17 H 0.144 0.856 18 C -0.063 4.063 19 N -0.237 5.237 20 C -0.077 4.077 21 C -0.172 4.172 22 C 0.016 3.984 23 N -0.154 5.154 24 C -0.095 4.095 25 C -0.305 4.305 26 C -0.143 4.143 27 N -0.112 5.112 28 C -0.048 4.048 29 C -0.018 4.018 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.189 0.811 45 H 0.164 0.836 46 H 0.199 0.801 47 H 0.112 0.888 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.446 -8.528 16.726 19.294 hybrid contribution -0.752 2.177 0.378 2.334 sum -5.198 -6.351 17.104 18.971 Atomic orbital electron populations 1.69965 1.06042 1.26936 1.49464 1.25011 0.94852 0.99343 0.94288 0.86509 0.80313 0.83396 0.77698 1.19518 1.20867 1.20898 1.21019 0.93109 0.89674 1.51757 0.91821 1.20504 0.94349 0.91361 0.92314 1.23682 0.99144 0.76740 1.01962 1.50328 1.41785 1.04594 1.39827 1.18723 0.81843 0.81952 0.81480 1.90627 1.56172 1.40489 1.57198 1.22364 0.98268 0.98705 0.97266 1.23085 0.91165 1.00011 1.01194 1.23509 1.03492 0.94840 0.93506 0.85564 1.22639 0.95045 0.95449 0.93119 1.65020 1.50707 1.06680 1.01291 1.22151 0.97011 0.96547 0.91948 1.21889 1.03007 0.97512 0.94746 1.21654 0.93305 0.85388 0.98073 1.48719 1.05314 1.10069 1.51310 1.22568 1.00359 0.86220 1.00356 1.21519 0.91751 1.01918 1.15305 1.23916 1.00185 0.91326 0.98885 1.77384 0.89510 1.20725 1.23623 1.22357 1.01292 0.93553 0.87558 1.23509 0.94396 0.93549 0.90383 0.92762 0.91715 0.90953 0.91942 0.88346 0.87377 0.93337 0.89286 0.94391 0.90092 0.89156 0.90940 0.88802 0.89718 0.81118 0.83639 0.80111 0.88832 0.93349 0.92084 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.28 55.43 0.74 -23.23 16 2 C 0.07 1.77 5.46 -17.81 -0.10 1.68 16 3 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.23 8.77 -34.44 -0.30 -13.53 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.03 0.80 3.62 -90.85 -0.33 0.47 16 10 C 0.11 2.27 6.66 -2.98 -0.02 2.25 16 11 N -0.63 -13.26 3.55 -178.45 -0.63 -13.89 16 12 C 0.57 11.72 7.64 -10.99 -0.08 11.64 16 13 O -0.56 -13.20 17.54 5.55 0.10 -13.10 16 14 C -0.16 -2.61 2.67 -154.28 -0.41 -3.02 16 15 C -0.12 -1.53 9.89 -26.73 -0.26 -1.79 16 16 C -0.13 -1.79 6.77 -89.24 -0.60 -2.39 16 17 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 18 C 0.06 0.71 6.31 -2.18 -0.01 0.69 16 19 N -0.51 -6.45 5.39 -230.73 -1.24 -7.69 16 20 C 0.05 0.49 4.91 -3.82 -0.02 0.47 16 21 C -0.13 -1.40 5.13 -26.73 -0.14 -1.54 16 22 C 0.14 1.16 6.51 -4.04 -0.03 1.14 16 23 N -0.37 -4.21 3.68 -61.36 -0.23 -4.44 16 24 C 0.05 0.50 11.45 -17.23 -0.20 0.31 16 25 C -0.28 -2.86 10.80 -40.02 -0.43 -3.29 16 26 C 0.04 0.50 12.03 -17.37 -0.21 0.30 16 27 N -0.29 -3.99 12.42 30.63 0.38 -3.61 16 28 C 0.08 1.15 4.39 -2.67 -0.01 1.14 16 29 C 0.10 2.21 8.39 -2.98 -0.02 2.19 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.06 1.65 8.13 -51.93 -0.42 1.23 16 32 H 0.07 1.54 7.98 -51.93 -0.41 1.13 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.05 0.45 7.91 -51.93 -0.41 0.04 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.31 7.96 -51.93 -0.41 -0.10 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.89 7.25 -51.93 -0.38 0.51 16 42 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 45 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 47 H 0.09 1.55 6.55 -51.93 -0.34 1.21 16 48 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.07 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -32.28 411.54 -11.14 -43.41 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.25 Total: 4.51 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.18 Total: -3.30 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.99 Total: -52.87 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.10 Total: -13.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.28 -11.14 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278020339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.999 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds