Wall clock time and date at job start Wed Apr 1 2020 02:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99824 * 3 2 1 5 5 H 1.48496 * 109.47744 * 29.99853 * 3 2 1 6 6 H 1.48500 * 109.46784 * 150.00325 * 3 2 1 7 7 C 1.37874 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 174.68779 * 7 2 1 9 9 C 1.50698 * 120.00215 * 354.69011 * 7 2 1 10 10 C 1.53499 * 114.20768 * 184.47556 * 9 7 2 11 11 N 1.47065 * 87.98356 * 139.85370 * 10 9 7 12 12 C 1.34775 * 136.05408 * 152.85182 * 11 10 9 13 13 O 1.21280 * 120.00477 * 4.11391 * 12 11 10 14 14 C 1.50704 * 119.99484 * 184.11617 * 12 11 10 15 15 C 1.53064 * 119.25119 * 142.95743 * 14 12 11 16 16 C 1.52939 * 60.42810 * 248.81310 * 15 14 12 17 17 H 1.09007 * 119.49164 * 111.71613 * 16 15 14 18 18 C 1.54559 * 118.19683 * 266.78232 * 16 15 14 19 19 C 1.58349 * 101.37521 * 86.38255 * 18 16 15 20 20 N 1.47942 * 117.67878 * 297.63878 * 14 12 11 21 21 C 1.46896 * 111.00002 * 354.98749 * 20 14 12 22 22 C 1.53004 * 109.47440 * 195.36748 * 21 20 14 23 23 C 1.52991 * 109.47197 * 184.66202 * 22 21 20 24 24 N 1.46502 * 109.47314 * 184.94770 * 23 22 21 25 25 C 1.34946 * 126.03789 * 124.71066 * 24 23 22 26 26 C 1.35322 * 107.74664 * 179.84685 * 25 24 23 27 27 C 1.39877 * 107.91975 * 0.42151 * 26 25 24 28 28 N 1.30846 * 108.19644 * 359.73997 * 27 26 25 29 29 C 1.47069 * 87.88460 * 333.10054 * 11 10 9 30 30 H 0.97000 * 120.00303 * 0.02562 * 1 2 3 31 31 H 1.09004 * 113.28160 * 51.41118 * 9 7 2 32 32 H 1.09003 * 113.46213 * 25.07154 * 10 9 7 33 33 H 1.08999 * 113.52369 * 254.64480 * 10 9 7 34 34 H 1.08996 * 117.45868 * 141.19518 * 15 14 12 35 35 H 1.09011 * 117.42667 * 356.43421 * 15 14 12 36 36 H 1.09008 * 110.71543 * 205.80529 * 18 16 15 37 37 H 1.09002 * 110.72116 * 329.07410 * 18 16 15 38 38 H 1.09005 * 110.38618 * 203.97336 * 19 18 16 39 39 H 1.09001 * 110.94003 * 81.02069 * 19 18 16 40 40 H 1.09002 * 109.47359 * 315.36814 * 21 20 14 41 41 H 1.09004 * 109.47093 * 75.36922 * 21 20 14 42 42 H 1.09001 * 109.46815 * 304.65945 * 22 21 20 43 43 H 1.08995 * 109.46852 * 64.66047 * 22 21 20 44 44 H 1.09001 * 109.47111 * 304.94559 * 23 22 21 45 45 H 1.08999 * 109.47710 * 64.94558 * 23 22 21 46 46 H 1.07994 * 126.13092 * 0.02562 * 25 24 23 47 47 H 1.07994 * 126.04635 * 180.16732 * 26 25 24 48 48 H 1.07992 * 125.89961 * 179.72025 * 27 26 25 49 49 H 1.09001 * 113.46305 * 141.68028 * 29 11 10 50 50 H 1.09005 * 113.46793 * 272.11811 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0810 -1.1961 -0.0861 9 6 1.2558 -2.4963 0.1219 10 6 2.1581 -3.7345 0.2171 11 7 1.2306 -4.2685 1.2258 12 6 0.8631 -5.4922 1.6547 13 8 1.4082 -6.4799 1.2097 14 6 -0.2255 -5.6330 2.6874 15 6 -1.2072 -6.8028 2.5845 16 6 -1.7018 -5.3779 2.3314 17 1 -2.0070 -5.0864 1.3263 18 6 -2.3041 -4.5923 3.5183 19 6 -1.0046 -3.9605 4.1662 20 7 0.0100 -5.0353 4.0200 21 6 1.3710 -4.4917 4.1201 22 6 1.7113 -4.2358 5.5897 23 6 3.0817 -3.5625 5.6861 24 7 3.4600 -3.4245 7.0947 25 6 4.5956 -3.8843 7.6604 26 6 4.5668 -3.5523 8.9720 27 6 3.3682 -2.8746 9.2182 28 7 2.7040 -2.7975 8.0935 29 6 0.8763 -2.8799 1.5560 30 1 -0.4850 0.8400 -0.0004 31 1 0.4394 -2.5922 -0.5939 32 1 3.1511 -3.5186 0.6114 33 1 2.1877 -4.3227 -0.7001 34 1 -1.5147 -7.2841 3.5128 35 1 -1.1133 -7.4628 1.7220 36 1 -3.0021 -3.8336 3.1641 37 1 -2.7916 -5.2684 4.2207 38 1 -1.1766 -3.7342 5.2185 39 1 -0.6966 -3.0647 3.6269 40 1 2.0796 -5.2069 3.7023 41 1 1.4300 -3.5553 3.5652 42 1 0.9552 -3.5856 6.0298 43 1 1.7334 -5.1834 6.1278 44 1 3.8230 -4.1716 5.1688 45 1 3.0354 -2.5763 5.2241 46 1 5.3871 -4.4187 7.1562 47 1 5.3319 -3.7751 9.7009 48 1 3.0466 -2.4830 10.1718 49 1 -0.1827 -2.7425 1.7747 50 1 1.5244 -2.4342 2.3107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278021594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:29 Heat of formation + Delta-G solvation = 130.233729 kcal Electronic energy + Delta-G solvation = -31083.997949 eV Core-core repulsion = 27115.828668 eV Total energy + Delta-G solvation = -3968.169281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18426 -40.72526 -38.64608 -37.07402 -35.72063 -33.27875 -32.77212 -30.86686 -30.28084 -29.58337 -28.90830 -25.60075 -25.42594 -25.12406 -23.41271 -22.42804 -21.63344 -21.10691 -20.59592 -20.41098 -19.96384 -17.90714 -17.40708 -17.07998 -16.49091 -15.84054 -15.76490 -15.18282 -14.91884 -14.73980 -14.54508 -14.37308 -14.28377 -13.78544 -13.57123 -13.36469 -13.03184 -12.85157 -12.78036 -12.52776 -12.40020 -12.25602 -12.05662 -11.69312 -11.58462 -11.44938 -11.29246 -11.09241 -11.05211 -10.92996 -10.78758 -10.60837 -10.51886 -10.38401 -10.25072 -9.61714 -9.50779 -9.33538 -9.06343 -8.68570 -8.68216 -8.27542 -8.03042 -6.28408 -4.34162 1.83453 2.41884 2.75016 2.77074 3.16626 3.23965 3.25716 3.30597 3.72360 3.81987 4.24631 4.41662 4.59974 4.71773 4.72167 4.77886 4.84014 4.97647 5.01277 5.06391 5.11282 5.15866 5.29004 5.35909 5.45871 5.47083 5.62067 5.63235 5.67081 5.78777 5.85126 5.87851 5.88573 5.92146 5.93843 6.02636 6.07559 6.09775 6.13819 6.25491 6.31088 6.36355 6.47897 6.56338 6.68464 6.81030 6.90913 7.00417 7.44044 7.63618 7.68659 8.05615 8.32754 8.60132 8.69166 9.33200 10.81118 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006955 B = 0.004149 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.180477 B = 6746.450287 C = 9219.042933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.100 3.900 11 N -0.638 5.638 12 C 0.565 3.435 13 O -0.555 6.555 14 C -0.005 4.005 15 C -0.104 4.104 16 C -0.159 4.159 17 H 0.116 0.884 18 C -0.090 4.090 19 C 0.027 3.973 20 N -0.467 5.467 21 C 0.032 3.968 22 C -0.117 4.117 23 C 0.131 3.869 24 N -0.365 5.365 25 C 0.053 3.947 26 C -0.280 4.280 27 C 0.038 3.962 28 N -0.292 5.292 29 C 0.098 3.902 30 H 0.265 0.735 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.172 0.828 47 H 0.145 0.855 48 H 0.180 0.820 49 H 0.061 0.939 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -7.169 13.035 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.018 3.982 10 C -0.022 4.022 11 N -0.372 5.372 12 C 0.352 3.648 13 O -0.433 6.433 14 C -0.098 4.098 15 C -0.142 4.142 16 C -0.178 4.178 17 H 0.134 0.866 18 C -0.128 4.128 19 C -0.100 4.100 20 N -0.191 5.191 21 C -0.097 4.097 22 C -0.155 4.155 23 C 0.010 3.990 24 N -0.147 5.147 25 C -0.094 4.094 26 C -0.310 4.310 27 C -0.147 4.147 28 N -0.114 5.114 29 C -0.024 4.024 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.189 0.811 47 H 0.162 0.838 48 H 0.197 0.803 49 H 0.080 0.920 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.191 -7.743 12.561 14.757 hybrid contribution 1.446 1.232 -0.113 1.903 sum 1.636 -6.511 12.447 14.142 Atomic orbital electron populations 1.69945 1.06056 1.27242 1.48723 1.24997 0.94826 0.99345 0.94097 0.86578 0.79948 0.83059 0.78408 1.20412 1.21029 1.19682 1.20862 0.93369 0.89566 1.52107 0.91800 1.20266 0.94738 0.91480 0.91678 1.23366 0.94564 0.94394 0.89870 1.50041 1.42781 1.05042 1.39290 1.19005 0.82808 0.81755 0.81235 1.90644 1.56220 1.37250 1.59207 1.22662 0.91297 1.06323 0.89534 1.23120 0.97182 0.90403 1.03544 1.23769 0.94495 0.98915 1.00671 0.86605 1.22681 0.96344 0.98727 0.95074 1.24295 0.90638 0.93682 1.01350 1.64404 1.03098 1.27429 1.24190 1.22510 0.90474 1.00592 0.96096 1.21702 0.95511 1.01496 0.96827 1.21766 0.98403 1.02843 0.76023 1.48783 1.14510 1.42854 1.08590 1.22607 0.91642 1.00384 0.94725 1.21484 1.01814 1.11638 0.96068 1.23877 0.93889 0.99655 0.97326 1.77373 1.19185 1.18395 0.96428 1.23636 0.99640 0.76535 1.02571 0.92551 0.91580 0.90811 0.92364 0.87794 0.87661 0.89819 0.90498 0.89615 0.92031 0.90858 0.91620 0.90285 0.90889 0.88538 0.89214 0.81105 0.83764 0.80263 0.92034 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.09 13.29 55.43 0.74 -22.35 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 3 Si 0.89 19.47 29.54 -169.99 -5.02 14.45 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.52 -12.66 8.83 -34.44 -0.30 -12.96 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.04 0.83 3.75 -91.39 -0.34 0.49 16 10 C 0.10 1.98 8.19 -8.51 -0.07 1.91 16 11 N -0.64 -12.24 3.23 -185.39 -0.60 -12.84 16 12 C 0.56 10.87 5.77 -10.98 -0.06 10.81 16 13 O -0.55 -12.33 17.73 5.56 0.10 -12.24 16 14 C -0.01 -0.08 2.65 -131.63 -0.35 -0.43 16 15 C -0.10 -1.44 9.88 -26.73 -0.26 -1.71 16 16 C -0.16 -2.22 6.82 -89.32 -0.61 -2.83 16 17 H 0.12 1.69 8.14 -51.92 -0.42 1.26 16 18 C -0.09 -1.09 7.10 -22.96 -0.16 -1.25 16 19 C 0.03 0.36 6.19 0.03 0.00 0.36 16 20 N -0.47 -6.77 5.17 -213.92 -1.11 -7.88 16 21 C 0.03 0.45 3.77 -3.82 -0.01 0.44 16 22 C -0.12 -1.45 5.59 -26.73 -0.15 -1.60 16 23 C 0.13 1.50 6.51 -4.05 -0.03 1.47 16 24 N -0.37 -4.53 3.68 -61.37 -0.23 -4.76 16 25 C 0.05 0.55 11.45 -17.22 -0.20 0.35 16 26 C -0.28 -2.83 10.80 -40.01 -0.43 -3.26 16 27 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 28 N -0.29 -4.03 12.42 30.63 0.38 -3.65 16 29 C 0.10 1.93 5.69 -8.64 -0.05 1.88 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.11 1.47 8.14 -51.92 -0.42 1.04 16 36 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.03 7.83 -51.93 -0.41 0.63 16 39 H 0.06 0.91 5.61 -51.93 -0.29 0.62 16 40 H 0.07 1.15 7.05 -51.93 -0.37 0.79 16 41 H 0.07 1.01 3.81 -51.93 -0.20 0.81 16 42 H 0.08 1.05 7.48 -51.93 -0.39 0.66 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 48 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.06 1.24 6.75 -51.93 -0.35 0.89 16 50 H 0.07 1.44 6.55 -51.93 -0.34 1.10 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -29.73 401.71 -10.82 -40.55 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.80 Total: 7.08 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.34 Total: -4.42 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.81 Total: -51.48 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.10 Total: -12.24 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.73 -10.82 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278021594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.784 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds