Wall clock time and date at job start Wed Apr 1 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99824 * 3 2 1 5 5 H 1.48496 * 109.47744 * 29.99853 * 3 2 1 6 6 H 1.48500 * 109.46784 * 150.00325 * 3 2 1 7 7 C 1.37874 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 174.68779 * 7 2 1 9 9 C 1.50698 * 120.00215 * 354.69011 * 7 2 1 10 10 C 1.53499 * 114.20768 * 184.47556 * 9 7 2 11 11 N 1.47065 * 87.98356 * 139.85370 * 10 9 7 12 12 C 1.34775 * 136.05408 * 152.85182 * 11 10 9 13 13 O 1.21280 * 120.00477 * 4.11391 * 12 11 10 14 14 C 1.50704 * 119.99484 * 184.11617 * 12 11 10 15 15 C 1.53064 * 119.25119 * 142.95743 * 14 12 11 16 16 C 1.52939 * 60.42810 * 248.81310 * 15 14 12 17 17 H 1.09007 * 119.49164 * 111.71613 * 16 15 14 18 18 C 1.54559 * 118.19683 * 266.78232 * 16 15 14 19 19 C 1.58349 * 101.37521 * 86.38255 * 18 16 15 20 20 N 1.47942 * 117.67878 * 297.63878 * 14 12 11 21 21 C 1.46896 * 111.00002 * 354.98749 * 20 14 12 22 22 C 1.53004 * 109.47440 * 195.36748 * 21 20 14 23 23 C 1.52991 * 109.47197 * 184.66202 * 22 21 20 24 24 N 1.46502 * 109.47314 * 184.94770 * 23 22 21 25 25 C 1.34946 * 126.03789 * 124.71066 * 24 23 22 26 26 C 1.35322 * 107.74664 * 179.84685 * 25 24 23 27 27 C 1.39877 * 107.91975 * 0.42151 * 26 25 24 28 28 N 1.30846 * 108.19644 * 359.73997 * 27 26 25 29 29 C 1.47069 * 87.88460 * 333.10054 * 11 10 9 30 30 H 0.97000 * 120.00303 * 0.02562 * 1 2 3 31 31 H 1.09004 * 113.28160 * 51.41118 * 9 7 2 32 32 H 1.09003 * 113.46213 * 25.07154 * 10 9 7 33 33 H 1.08999 * 113.52369 * 254.64480 * 10 9 7 34 34 H 1.08996 * 117.45868 * 141.19518 * 15 14 12 35 35 H 1.09011 * 117.42667 * 356.43421 * 15 14 12 36 36 H 1.09008 * 110.71543 * 205.80529 * 18 16 15 37 37 H 1.09002 * 110.72116 * 329.07410 * 18 16 15 38 38 H 1.09005 * 110.38618 * 203.97336 * 19 18 16 39 39 H 1.09001 * 110.94003 * 81.02069 * 19 18 16 40 40 H 1.09002 * 109.47359 * 315.36814 * 21 20 14 41 41 H 1.09004 * 109.47093 * 75.36922 * 21 20 14 42 42 H 1.09001 * 109.46815 * 304.65945 * 22 21 20 43 43 H 1.08995 * 109.46852 * 64.66047 * 22 21 20 44 44 H 1.09001 * 109.47111 * 304.94559 * 23 22 21 45 45 H 1.08999 * 109.47710 * 64.94558 * 23 22 21 46 46 H 1.07994 * 126.13092 * 0.02562 * 25 24 23 47 47 H 1.07994 * 126.04635 * 180.16732 * 26 25 24 48 48 H 1.07992 * 125.89961 * 179.72025 * 27 26 25 49 49 H 1.09001 * 113.46305 * 141.68028 * 29 11 10 50 50 H 1.09005 * 113.46793 * 272.11811 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0810 -1.1961 -0.0861 9 6 1.2558 -2.4963 0.1219 10 6 2.1581 -3.7345 0.2171 11 7 1.2306 -4.2685 1.2258 12 6 0.8631 -5.4922 1.6547 13 8 1.4082 -6.4799 1.2097 14 6 -0.2255 -5.6330 2.6874 15 6 -1.2072 -6.8028 2.5845 16 6 -1.7018 -5.3779 2.3314 17 1 -2.0070 -5.0864 1.3263 18 6 -2.3041 -4.5923 3.5183 19 6 -1.0046 -3.9605 4.1662 20 7 0.0100 -5.0353 4.0200 21 6 1.3710 -4.4917 4.1201 22 6 1.7113 -4.2358 5.5897 23 6 3.0817 -3.5625 5.6861 24 7 3.4600 -3.4245 7.0947 25 6 4.5956 -3.8843 7.6604 26 6 4.5668 -3.5523 8.9720 27 6 3.3682 -2.8746 9.2182 28 7 2.7040 -2.7975 8.0935 29 6 0.8763 -2.8799 1.5560 30 1 -0.4850 0.8400 -0.0004 31 1 0.4394 -2.5922 -0.5939 32 1 3.1511 -3.5186 0.6114 33 1 2.1877 -4.3227 -0.7001 34 1 -1.5147 -7.2841 3.5128 35 1 -1.1133 -7.4628 1.7220 36 1 -3.0021 -3.8336 3.1641 37 1 -2.7916 -5.2684 4.2207 38 1 -1.1766 -3.7342 5.2185 39 1 -0.6966 -3.0647 3.6269 40 1 2.0796 -5.2069 3.7023 41 1 1.4300 -3.5553 3.5652 42 1 0.9552 -3.5856 6.0298 43 1 1.7334 -5.1834 6.1278 44 1 3.8230 -4.1716 5.1688 45 1 3.0354 -2.5763 5.2241 46 1 5.3871 -4.4187 7.1562 47 1 5.3319 -3.7751 9.7009 48 1 3.0466 -2.4830 10.1718 49 1 -0.1827 -2.7425 1.7747 50 1 1.5244 -2.4342 2.3107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278021594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:28 Heat of formation + Delta-G solvation = 112.952325 kcal Electronic energy + Delta-G solvation = -31084.747327 eV Core-core repulsion = 27115.828668 eV Total energy + Delta-G solvation = -3968.918659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14366 -41.94491 -40.11159 -38.67174 -36.77513 -34.69477 -34.25305 -31.96496 -31.34324 -30.82147 -30.09643 -27.33146 -26.96184 -26.26908 -24.56450 -23.77635 -22.76151 -21.92095 -21.70108 -21.59089 -21.28183 -19.29327 -18.94283 -18.31647 -17.88763 -17.27684 -16.81129 -16.62747 -16.38176 -16.05644 -15.95902 -15.44423 -15.20721 -15.11504 -14.59779 -14.53744 -14.28411 -14.12995 -13.98035 -13.86122 -13.61612 -13.38906 -13.31242 -13.19306 -12.89969 -12.82680 -12.72567 -12.59729 -12.39749 -12.24849 -12.12115 -11.91971 -11.67480 -11.52028 -11.47059 -11.27222 -11.05995 -10.64259 -10.54876 -10.38687 -9.70357 -9.50904 -9.44273 -8.20069 -6.30641 1.01551 1.28952 1.43801 1.47433 1.55301 1.59592 1.78195 1.99017 2.42597 2.47633 2.69734 3.10649 3.30482 3.51502 3.56817 3.59924 3.76876 3.94947 4.00836 4.04046 4.12160 4.13550 4.22010 4.23131 4.29817 4.33267 4.42175 4.45348 4.49019 4.53085 4.64073 4.67979 4.70666 4.73668 4.79477 4.86249 4.88264 4.93429 4.98518 5.00508 5.05889 5.09048 5.17740 5.20785 5.56028 5.66110 5.76947 5.78201 5.81779 6.14576 6.18064 6.74575 6.77082 6.80780 7.02599 7.39458 8.89598 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006955 B = 0.004149 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.180477 B = 6746.450287 C = 9219.042933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.027 3.973 10 C 0.105 3.895 11 N -0.635 5.635 12 C 0.563 3.437 13 O -0.588 6.588 14 C -0.031 4.031 15 C -0.090 4.090 16 C -0.151 4.151 17 H 0.106 0.894 18 C -0.081 4.081 19 C 0.026 3.974 20 N -0.461 5.461 21 C 0.040 3.960 22 C -0.098 4.098 23 C 0.133 3.867 24 N -0.379 5.379 25 C 0.048 3.952 26 C -0.285 4.285 27 C 0.034 3.966 28 N -0.339 5.339 29 C 0.122 3.878 30 H 0.265 0.735 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.201 0.799 47 H 0.170 0.830 48 H 0.205 0.795 49 H 0.056 0.944 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -7.420 14.816 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.008 3.992 10 C -0.017 4.017 11 N -0.368 5.368 12 C 0.353 3.647 13 O -0.468 6.468 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.171 4.171 17 H 0.124 0.876 18 C -0.119 4.119 19 C -0.101 4.101 20 N -0.185 5.185 21 C -0.089 4.089 22 C -0.137 4.137 23 C 0.011 3.989 24 N -0.161 5.161 25 C -0.098 4.098 26 C -0.314 4.314 27 C -0.151 4.151 28 N -0.161 5.161 29 C 0.000 4.000 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.099 0.901 46 H 0.218 0.782 47 H 0.187 0.813 48 H 0.221 0.779 49 H 0.074 0.926 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.699 -7.994 14.350 16.441 hybrid contribution 1.323 1.271 -0.683 1.958 sum 2.021 -6.722 13.666 15.364 Atomic orbital electron populations 1.70047 1.07297 1.27831 1.49978 1.25661 0.95452 1.02200 0.93968 0.85663 0.78983 0.79470 0.78235 1.20368 1.21135 1.18884 1.21151 0.93667 0.90426 1.51517 0.91499 1.20134 0.94508 0.92000 0.92605 1.23268 0.94861 0.93281 0.90325 1.50011 1.42579 1.05162 1.39062 1.19596 0.82984 0.80880 0.81274 1.90616 1.57539 1.38055 1.60624 1.22723 0.91198 1.08930 0.89511 1.23216 0.95117 0.90056 1.04376 1.23880 0.92719 0.99353 1.01118 0.87550 1.22728 0.95780 0.98962 0.94426 1.24348 0.90936 0.92695 1.02146 1.64546 1.03355 1.27784 1.22791 1.22393 0.90241 0.99217 0.97010 1.21486 0.96004 1.01047 0.95120 1.21738 0.98311 1.02560 0.76302 1.48847 1.15213 1.43554 1.08536 1.23227 0.91544 0.99873 0.95172 1.21870 1.01959 1.11038 0.96548 1.24432 0.94088 0.98997 0.97630 1.77317 1.20903 1.20268 0.97597 1.23297 0.99306 0.76566 1.00876 0.92633 0.94576 0.89529 0.92460 0.85649 0.88023 0.88837 0.88316 0.88065 0.93936 0.92428 0.92979 0.91209 0.91271 0.86699 0.90088 0.78194 0.81301 0.77881 0.92608 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.38 13.29 21.45 0.29 -48.09 16 2 C 0.03 1.41 5.45 84.65 0.46 1.87 16 3 Si 0.95 39.76 29.54 68.60 2.03 41.79 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.53 -25.87 8.83 25.60 0.23 -25.64 16 8 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.03 1.22 3.75 -11.29 -0.04 1.17 16 10 C 0.10 4.19 8.19 83.18 0.68 4.87 16 11 N -0.64 -24.67 3.23 -858.84 -2.78 -27.45 16 12 C 0.56 21.81 5.77 87.66 0.51 22.31 16 13 O -0.59 -26.33 17.73 -3.03 -0.05 -26.39 16 14 C -0.03 -0.96 2.65 2.94 0.01 -0.95 16 15 C -0.09 -2.33 9.88 30.60 0.30 -2.03 16 16 C -0.15 -4.04 6.82 -9.95 -0.07 -4.11 16 17 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 18 C -0.08 -1.79 7.10 33.04 0.23 -1.55 16 19 C 0.03 0.65 6.19 87.90 0.54 1.19 16 20 N -0.46 -12.92 5.17 -830.73 -4.29 -17.22 16 21 C 0.04 1.13 3.77 86.31 0.33 1.46 16 22 C -0.10 -2.38 5.59 30.59 0.17 -2.21 16 23 C 0.13 2.95 6.51 86.38 0.56 3.51 16 24 N -0.38 -9.02 3.68 -348.07 -1.28 -10.30 16 25 C 0.05 0.90 11.45 83.54 0.96 1.85 16 26 C -0.28 -5.12 10.80 21.99 0.24 -4.88 16 27 C 0.03 0.71 12.03 85.24 1.03 1.73 16 28 N -0.34 -9.11 12.42 -57.02 -0.71 -9.82 16 29 C 0.12 4.85 5.69 83.09 0.47 5.32 16 30 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.09 3.24 8.10 -2.39 -0.02 3.22 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 2.27 7.83 -2.38 -0.02 2.25 16 39 H 0.04 1.25 5.61 -2.39 -0.01 1.24 16 40 H 0.06 1.81 7.05 -2.39 -0.02 1.79 16 41 H 0.05 1.61 3.81 -2.38 -0.01 1.60 16 42 H 0.07 1.83 7.48 -2.39 -0.02 1.82 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 47 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 48 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 49 H 0.06 2.29 6.75 -2.39 -0.02 2.27 16 50 H 0.08 3.12 6.55 -2.38 -0.02 3.10 16 Total: -1.00 -64.17 401.71 0.74 -63.43 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.94 Total: 30.13 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.60 Total: 3.91 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -8.77 Total: -112.88 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -64.17 0.74 -63.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278021594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.387 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds