Wall clock time and date at job start Wed Apr 1 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48499 * 109.47040 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99934 * 3 2 1 6 6 H 1.48508 * 109.46696 * 149.99755 * 3 2 1 7 7 C 1.37874 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00053 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20533 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98299 * 139.65691 * 10 9 7 12 12 C 1.34779 * 136.05738 * 152.84755 * 11 10 9 13 13 O 1.21279 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00141 * 179.97438 * 12 11 10 15 15 H 1.08993 * 115.56856 * 34.27371 * 14 12 11 16 16 C 1.53055 * 117.50181 * 248.55954 * 14 12 11 17 17 C 1.52732 * 117.50351 * 179.97438 * 14 12 11 18 18 C 1.53226 * 117.83504 * 359.74316 * 17 14 12 19 19 C 1.53254 * 108.62736 * 163.01935 * 18 17 14 20 20 N 1.46816 * 109.45241 * 55.56268 * 19 18 17 21 21 C 1.46892 * 111.00031 * 170.80069 * 20 19 18 22 22 C 1.50703 * 109.47128 * 170.00074 * 21 20 19 23 23 C 1.34668 * 126.58748 * 95.02663 * 22 21 20 24 24 N 1.34134 * 108.01972 * 179.97438 * 23 22 21 25 25 C 1.30501 * 109.25535 * 0.02562 * 24 23 22 26 26 N 1.35044 * 108.69892 * 359.97438 * 25 24 23 27 27 H 0.96995 * 126.39482 * 179.97438 * 26 25 24 28 28 C 1.46808 * 111.58470 * 295.18695 * 20 19 18 29 29 C 1.53211 * 117.84361 * 215.20958 * 17 14 12 30 30 C 1.47064 * 87.88852 * 333.09888 * 11 10 9 31 31 H 0.96999 * 119.99912 * 0.02562 * 1 2 3 32 32 H 1.08997 * 113.41052 * 46.80012 * 9 7 2 33 33 H 1.08991 * 113.46984 * 24.87529 * 10 9 7 34 34 H 1.09007 * 113.51641 * 254.44097 * 10 9 7 35 35 H 1.09000 * 117.50654 * 145.05894 * 16 14 12 36 36 H 1.09001 * 117.53304 * 359.97420 * 16 14 12 37 37 H 1.09001 * 109.61527 * 43.28091 * 18 17 14 38 38 H 1.08996 * 109.75183 * 282.84231 * 18 17 14 39 39 H 1.08999 * 109.47323 * 295.57396 * 19 18 17 40 40 H 1.08998 * 109.48019 * 175.56529 * 19 18 17 41 41 H 1.09008 * 109.47169 * 50.00602 * 21 20 19 42 42 H 1.08996 * 109.47906 * 290.00640 * 21 20 19 43 43 H 1.08001 * 125.99672 * 359.97438 * 23 22 21 44 44 H 1.07996 * 125.64878 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47417 * 184.80599 * 28 20 19 46 46 H 1.09003 * 109.47631 * 304.81740 * 28 20 19 47 47 H 1.08988 * 109.61387 * 316.72566 * 29 17 14 48 48 H 1.09008 * 109.60757 * 77.06957 * 29 17 14 49 49 H 1.09000 * 113.46990 * 141.68081 * 30 11 10 50 50 H 1.09004 * 113.46866 * 272.12291 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3574 0.9509 12 6 0.8345 -5.6113 1.2724 13 8 1.3281 -6.5583 0.6975 14 6 -0.1985 -5.8367 2.3463 15 1 -0.9823 -5.0821 2.4109 16 6 0.2691 -6.4837 3.6522 17 6 -0.5819 -7.2806 2.6643 18 6 0.1041 -8.3951 1.8673 19 6 -0.0910 -9.7204 2.6117 20 7 -1.5242 -9.9528 2.8290 21 6 -1.7660 -11.3079 3.3419 22 6 -3.2020 -11.4294 3.7827 23 6 -4.2276 -11.9092 3.0536 24 7 -5.3361 -11.8483 3.8065 25 6 -5.0364 -11.3484 4.9741 26 7 -3.7145 -11.0735 5.0010 27 1 -3.2206 -10.6941 5.7446 28 6 -2.1064 -8.9414 3.7197 29 6 -2.0381 -7.5670 3.0449 30 6 0.8561 -3.0001 1.3928 31 1 -0.4850 0.8400 -0.0004 32 1 0.4412 -2.5317 -0.7294 33 1 3.1383 -3.5658 0.4200 34 1 2.1857 -4.2538 -0.9634 35 1 -0.2072 -6.1547 4.5758 36 1 1.3237 -6.7468 3.7348 37 1 1.1687 -8.1790 1.7780 38 1 -0.3397 -8.4645 0.8742 39 1 0.4198 -9.6755 3.5736 40 1 0.3234 -10.5352 2.0180 41 1 -1.1083 -11.4981 4.1901 42 1 -1.5645 -12.0354 2.5557 43 1 -4.1681 -12.2784 2.0404 44 1 -5.7305 -11.1822 5.7846 45 1 -3.1466 -9.1939 3.9255 46 1 -1.5469 -8.9153 4.6548 47 1 -2.3929 -6.8023 3.7357 48 1 -2.6577 -7.5658 2.1481 49 1 -0.2046 -2.8776 1.6120 50 1 1.4979 -2.6214 2.1883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278350660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:01 Heat of formation + Delta-G solvation = 96.743778 kcal Electronic energy + Delta-G solvation = -29772.498351 eV Core-core repulsion = 25802.876837 eV Total energy + Delta-G solvation = -3969.621514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44319 -40.30667 -38.95837 -37.42977 -35.87397 -32.89236 -32.71485 -31.79760 -31.08190 -29.58322 -28.69170 -25.73453 -25.24065 -24.99742 -23.54477 -23.16132 -22.10403 -21.84580 -21.01324 -20.14302 -18.75932 -18.11657 -18.02966 -16.89067 -16.46001 -16.38521 -15.39632 -15.21922 -15.04735 -15.00314 -14.73194 -14.55815 -14.39695 -13.99268 -13.76744 -13.64773 -13.31249 -13.08516 -12.96774 -12.62804 -12.37822 -12.21580 -12.05189 -11.85257 -11.61753 -11.52127 -11.32924 -11.19617 -10.95943 -10.83502 -10.63472 -10.35845 -10.30532 -10.26703 -9.91904 -9.77602 -9.52779 -9.21393 -8.86403 -8.84270 -8.60444 -8.43319 -7.86882 -6.20859 -4.26587 1.65628 2.74910 2.86983 2.94311 3.21848 3.29392 3.31477 3.45874 3.72694 3.96542 4.28879 4.30966 4.49452 4.58231 4.62207 4.70380 4.79830 4.89279 5.01734 5.03834 5.08925 5.17947 5.26407 5.30660 5.32158 5.35050 5.41176 5.47797 5.65274 5.66554 5.75095 5.88864 5.94665 5.96851 6.07805 6.10760 6.17889 6.25551 6.29473 6.42012 6.42351 6.53580 6.62122 6.64622 6.78802 6.81838 6.87758 7.00709 7.52748 7.74720 7.77012 8.15518 8.52548 8.77166 8.78475 9.40348 10.88899 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.001896 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.651001 B =14763.081069 C =15353.530911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.100 3.900 11 N -0.639 5.639 12 C 0.561 3.439 13 O -0.560 6.560 14 C -0.170 4.170 15 H 0.119 0.881 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.072 4.072 19 C 0.058 3.942 20 N -0.533 5.533 21 C 0.130 3.870 22 C -0.021 4.021 23 C -0.005 4.005 24 N -0.495 5.495 25 C 0.185 3.815 26 N -0.570 5.570 27 H 0.417 0.583 28 C 0.059 3.941 29 C -0.078 4.078 30 C 0.100 3.900 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.101 0.899 43 H 0.170 0.830 44 H 0.207 0.793 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -19.964 12.921 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.022 4.022 11 N -0.372 5.372 12 C 0.351 3.649 13 O -0.441 6.441 14 C -0.191 4.191 15 H 0.137 0.863 16 C -0.187 4.187 17 C -0.090 4.090 18 C -0.109 4.109 19 C -0.070 4.070 20 N -0.258 5.258 21 C 0.002 3.998 22 C -0.136 4.136 23 C -0.153 4.153 24 N -0.214 5.214 25 C -0.099 4.099 26 N -0.175 5.175 27 H 0.255 0.745 28 C -0.069 4.069 29 C -0.115 4.115 30 C -0.023 4.023 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.119 0.881 43 H 0.188 0.812 44 H 0.223 0.777 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.258 -20.773 11.931 24.759 hybrid contribution 1.678 1.585 1.648 2.836 sum -4.580 -19.188 13.579 23.949 Atomic orbital electron populations 1.69952 1.06074 1.27149 1.49080 1.25035 0.94877 0.99426 0.94243 0.86530 0.79845 0.82957 0.78323 1.20451 1.21150 1.19711 1.20901 0.93000 0.89540 1.52066 0.91838 1.20307 0.94746 0.91194 0.92296 1.23337 0.94307 0.93141 0.91383 1.49952 1.42169 1.04874 1.40174 1.19077 0.82094 0.81110 0.82607 1.90579 1.58402 1.40295 1.54848 1.22203 1.01534 0.97866 0.97455 0.86318 1.23053 1.00581 1.02761 0.92328 1.21473 0.95471 0.91294 1.00737 1.21386 1.02139 0.89632 0.97758 1.22259 0.86242 0.99287 0.99179 1.61925 1.15418 1.00904 1.47540 1.20531 0.88248 0.92216 0.98808 1.21091 0.97398 1.08067 0.87074 1.22142 0.87594 1.05246 1.00336 1.70326 1.29426 1.18950 1.02682 1.24994 0.83457 1.02704 0.98747 1.43449 1.10234 1.49723 1.14090 0.74539 1.22156 0.99406 0.92010 0.93356 1.21202 0.93942 0.95370 1.01009 1.23540 0.99684 0.76937 1.02090 0.92616 0.91419 0.90954 0.92458 0.88382 0.88581 0.88547 0.90577 0.95086 0.90547 0.94307 0.88116 0.81236 0.77677 0.90566 0.95430 0.91419 0.90332 0.92323 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.26 55.43 0.74 -23.23 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.91 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.52 -13.05 8.83 -34.44 -0.30 -13.36 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.03 0.79 3.77 -91.39 -0.34 0.44 16 10 C 0.10 2.09 8.19 -8.50 -0.07 2.02 16 11 N -0.64 -12.95 3.69 -185.38 -0.68 -13.63 16 12 C 0.56 10.73 7.84 -10.98 -0.09 10.65 16 13 O -0.56 -11.71 13.90 5.56 0.08 -11.63 16 14 C -0.17 -2.57 5.75 -91.88 -0.53 -3.10 16 15 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 16 C -0.15 -1.84 9.63 -26.80 -0.26 -2.10 16 17 C -0.09 -1.13 2.02 -154.51 -0.31 -1.45 16 18 C -0.07 -0.96 4.32 -26.48 -0.11 -1.07 16 19 C 0.06 0.59 5.45 -3.74 -0.02 0.57 16 20 N -0.53 -5.14 4.73 -235.89 -1.12 -6.25 16 21 C 0.13 1.00 5.82 -4.98 -0.03 0.97 16 22 C -0.02 -0.18 5.13 -81.60 -0.42 -0.60 16 23 C 0.00 -0.05 11.79 -17.81 -0.21 -0.26 16 24 N -0.49 -5.35 11.25 -14.66 -0.16 -5.52 16 25 C 0.18 1.36 13.04 -90.37 -1.18 0.18 16 26 N -0.57 -3.60 4.87 -10.30 -0.05 -3.65 16 27 H 0.42 1.54 8.96 -40.82 -0.37 1.18 16 28 C 0.06 0.54 5.02 -3.74 -0.02 0.53 16 29 C -0.08 -0.85 5.87 -26.49 -0.16 -1.00 16 30 C 0.10 2.09 7.98 -8.64 -0.07 2.02 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 33 H 0.07 1.45 8.10 -51.93 -0.42 1.02 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.10 1.49 6.00 -51.93 -0.31 1.18 16 38 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 39 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 41 H 0.04 0.26 8.08 -51.92 -0.42 -0.16 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.08 0.70 5.55 -51.93 -0.29 0.41 16 46 H 0.03 0.24 8.12 -51.93 -0.42 -0.19 16 47 H 0.07 0.66 8.08 -51.94 -0.42 0.24 16 48 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 49 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.07 1.51 8.10 -51.93 -0.42 1.08 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -30.56 401.12 -12.49 -43.06 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.10 Total: 3.84 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.21 Total: -3.91 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -1.28 Total: -52.29 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.56 -12.49 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278350660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.799 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds