Wall clock time and date at job start Wed Apr 1 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48499 * 109.47040 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99934 * 3 2 1 6 6 H 1.48508 * 109.46696 * 149.99755 * 3 2 1 7 7 C 1.37874 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00053 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20533 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98299 * 139.65691 * 10 9 7 12 12 C 1.34779 * 136.05738 * 152.84755 * 11 10 9 13 13 O 1.21279 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00141 * 179.97438 * 12 11 10 15 15 H 1.08993 * 115.56856 * 34.27371 * 14 12 11 16 16 C 1.53055 * 117.50181 * 248.55954 * 14 12 11 17 17 C 1.52732 * 117.50351 * 179.97438 * 14 12 11 18 18 C 1.53226 * 117.83504 * 359.74316 * 17 14 12 19 19 C 1.53254 * 108.62736 * 163.01935 * 18 17 14 20 20 N 1.46816 * 109.45241 * 55.56268 * 19 18 17 21 21 C 1.46892 * 111.00031 * 170.80069 * 20 19 18 22 22 C 1.50703 * 109.47128 * 170.00074 * 21 20 19 23 23 C 1.34668 * 126.58748 * 95.02663 * 22 21 20 24 24 N 1.34134 * 108.01972 * 179.97438 * 23 22 21 25 25 C 1.30501 * 109.25535 * 0.02562 * 24 23 22 26 26 N 1.35044 * 108.69892 * 359.97438 * 25 24 23 27 27 H 0.96995 * 126.39482 * 179.97438 * 26 25 24 28 28 C 1.46808 * 111.58470 * 295.18695 * 20 19 18 29 29 C 1.53211 * 117.84361 * 215.20958 * 17 14 12 30 30 C 1.47064 * 87.88852 * 333.09888 * 11 10 9 31 31 H 0.96999 * 119.99912 * 0.02562 * 1 2 3 32 32 H 1.08997 * 113.41052 * 46.80012 * 9 7 2 33 33 H 1.08991 * 113.46984 * 24.87529 * 10 9 7 34 34 H 1.09007 * 113.51641 * 254.44097 * 10 9 7 35 35 H 1.09000 * 117.50654 * 145.05894 * 16 14 12 36 36 H 1.09001 * 117.53304 * 359.97420 * 16 14 12 37 37 H 1.09001 * 109.61527 * 43.28091 * 18 17 14 38 38 H 1.08996 * 109.75183 * 282.84231 * 18 17 14 39 39 H 1.08999 * 109.47323 * 295.57396 * 19 18 17 40 40 H 1.08998 * 109.48019 * 175.56529 * 19 18 17 41 41 H 1.09008 * 109.47169 * 50.00602 * 21 20 19 42 42 H 1.08996 * 109.47906 * 290.00640 * 21 20 19 43 43 H 1.08001 * 125.99672 * 359.97438 * 23 22 21 44 44 H 1.07996 * 125.64878 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47417 * 184.80599 * 28 20 19 46 46 H 1.09003 * 109.47631 * 304.81740 * 28 20 19 47 47 H 1.08988 * 109.61387 * 316.72566 * 29 17 14 48 48 H 1.09008 * 109.60757 * 77.06957 * 29 17 14 49 49 H 1.09000 * 113.46990 * 141.68081 * 30 11 10 50 50 H 1.09004 * 113.46866 * 272.12291 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3574 0.9509 12 6 0.8345 -5.6113 1.2724 13 8 1.3281 -6.5583 0.6975 14 6 -0.1985 -5.8367 2.3463 15 1 -0.9823 -5.0821 2.4109 16 6 0.2691 -6.4837 3.6522 17 6 -0.5819 -7.2806 2.6643 18 6 0.1041 -8.3951 1.8673 19 6 -0.0910 -9.7204 2.6117 20 7 -1.5242 -9.9528 2.8290 21 6 -1.7660 -11.3079 3.3419 22 6 -3.2020 -11.4294 3.7827 23 6 -4.2276 -11.9092 3.0536 24 7 -5.3361 -11.8483 3.8065 25 6 -5.0364 -11.3484 4.9741 26 7 -3.7145 -11.0735 5.0010 27 1 -3.2206 -10.6941 5.7446 28 6 -2.1064 -8.9414 3.7197 29 6 -2.0381 -7.5670 3.0449 30 6 0.8561 -3.0001 1.3928 31 1 -0.4850 0.8400 -0.0004 32 1 0.4412 -2.5317 -0.7294 33 1 3.1383 -3.5658 0.4200 34 1 2.1857 -4.2538 -0.9634 35 1 -0.2072 -6.1547 4.5758 36 1 1.3237 -6.7468 3.7348 37 1 1.1687 -8.1790 1.7780 38 1 -0.3397 -8.4645 0.8742 39 1 0.4198 -9.6755 3.5736 40 1 0.3234 -10.5352 2.0180 41 1 -1.1083 -11.4981 4.1901 42 1 -1.5645 -12.0354 2.5557 43 1 -4.1681 -12.2784 2.0404 44 1 -5.7305 -11.1822 5.7846 45 1 -3.1466 -9.1939 3.9255 46 1 -1.5469 -8.9153 4.6548 47 1 -2.3929 -6.8023 3.7357 48 1 -2.6577 -7.5658 2.1481 49 1 -0.2046 -2.8776 1.6120 50 1 1.4979 -2.6214 2.1883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278350660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:00 Heat of formation + Delta-G solvation = 79.132951 kcal Electronic energy + Delta-G solvation = -29773.262014 eV Core-core repulsion = 25802.876837 eV Total energy + Delta-G solvation = -3970.385177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.03394 -41.59135 -40.29776 -38.73712 -37.04371 -34.65967 -33.53385 -32.57564 -31.93423 -31.09671 -29.66811 -27.38252 -26.73380 -26.06180 -24.61696 -24.30900 -22.99899 -22.43140 -21.82096 -21.59400 -19.84781 -19.44750 -18.75114 -18.67745 -17.94379 -17.26579 -16.64581 -16.55992 -16.13674 -16.09786 -15.78677 -15.72085 -15.31160 -15.01376 -14.83701 -14.40424 -14.34796 -14.26730 -14.18129 -13.86462 -13.66301 -13.28327 -13.24738 -13.05951 -13.03586 -12.80484 -12.69381 -12.67203 -12.49973 -12.16579 -12.12505 -11.56916 -11.30827 -11.07646 -11.01271 -10.95416 -10.86795 -10.84002 -10.58285 -10.34462 -9.55045 -9.47901 -9.11153 -8.17613 -6.29075 1.07310 1.46799 1.48537 1.52164 1.58372 1.96444 2.21691 2.27863 2.45190 2.75797 3.05796 3.12606 3.41571 3.58247 3.71819 3.82039 3.88613 3.96521 4.04791 4.11503 4.23769 4.24911 4.35924 4.39548 4.43388 4.50881 4.55014 4.57632 4.61062 4.68960 4.70370 4.73232 4.74954 4.81071 4.84864 4.87580 4.91756 4.97487 5.03369 5.12889 5.17152 5.29052 5.32836 5.50166 5.57604 5.78674 5.80080 6.09531 6.11977 6.21899 6.56754 6.79687 6.93036 7.16062 7.21268 7.41196 8.92440 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.001896 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.651001 B =14763.081069 C =15353.530911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.021 3.979 10 C 0.106 3.894 11 N -0.644 5.644 12 C 0.555 3.445 13 O -0.582 6.582 14 C -0.195 4.195 15 H 0.122 0.878 16 C -0.124 4.124 17 C -0.081 4.081 18 C -0.069 4.069 19 C 0.068 3.932 20 N -0.548 5.548 21 C 0.135 3.865 22 C -0.018 4.018 23 C -0.034 4.034 24 N -0.541 5.541 25 C 0.193 3.807 26 N -0.558 5.558 27 H 0.432 0.568 28 C 0.065 3.935 29 C -0.075 4.075 30 C 0.118 3.882 31 H 0.265 0.735 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.167 0.833 44 H 0.241 0.759 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -20.409 15.841 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.002 3.998 10 C -0.016 4.016 11 N -0.377 5.377 12 C 0.347 3.653 13 O -0.465 6.465 14 C -0.216 4.216 15 H 0.140 0.860 16 C -0.161 4.161 17 C -0.081 4.081 18 C -0.107 4.107 19 C -0.059 4.059 20 N -0.274 5.274 21 C 0.007 3.993 22 C -0.134 4.134 23 C -0.182 4.182 24 N -0.261 5.261 25 C -0.091 4.091 26 N -0.164 5.164 27 H 0.273 0.727 28 C -0.062 4.062 29 C -0.113 4.113 30 C -0.005 4.005 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.184 0.816 44 H 0.257 0.743 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.893 -21.233 14.869 26.583 hybrid contribution 1.553 1.650 0.682 2.366 sum -4.339 -19.583 15.551 25.380 Atomic orbital electron populations 1.70064 1.07468 1.27879 1.50328 1.25789 0.95593 1.02650 0.94033 0.85524 0.78832 0.78918 0.78195 1.20401 1.21026 1.18743 1.21200 0.93328 0.90412 1.51572 0.91467 1.20190 0.94562 0.91891 0.93200 1.23198 0.94574 0.92047 0.91811 1.49986 1.42265 1.05230 1.40214 1.19820 0.82306 0.80149 0.83003 1.90578 1.59382 1.40677 1.55817 1.22183 1.01230 0.99915 0.98306 0.86037 1.23173 1.00602 1.00338 0.92003 1.21574 0.96817 0.89404 1.00353 1.21219 1.00319 0.92057 0.97056 1.22094 0.86982 0.97470 0.99402 1.61840 1.14899 1.02066 1.48584 1.20525 0.88113 0.91016 0.99611 1.21067 0.97224 1.07593 0.87503 1.22289 0.88351 1.06671 1.00840 1.70284 1.30426 1.21012 1.04382 1.25657 0.84184 1.00785 0.98483 1.43389 1.10027 1.49057 1.13915 0.72742 1.22097 0.99849 0.90676 0.93625 1.21218 0.92040 0.97222 1.00814 1.23232 0.99613 0.77084 1.00572 0.92638 0.94636 0.89800 0.92760 0.85285 0.88883 0.90925 0.93532 0.93738 0.89817 0.92506 0.87700 0.81611 0.74268 0.90289 0.93567 0.89698 0.92256 0.92518 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 13.26 21.45 0.28 -50.14 16 2 C 0.02 1.01 5.46 84.65 0.46 1.47 16 3 Si 0.96 40.65 29.54 68.60 2.03 42.68 16 4 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.53 -26.76 8.83 25.60 0.23 -26.53 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.02 1.00 3.77 -11.29 -0.04 0.95 16 10 C 0.11 4.48 8.19 83.18 0.68 5.16 16 11 N -0.64 -26.35 3.69 -858.82 -3.17 -29.52 16 12 C 0.56 21.43 7.84 87.66 0.69 22.12 16 13 O -0.58 -24.89 13.90 -3.03 -0.04 -24.93 16 14 C -0.20 -5.78 5.75 -11.61 -0.07 -5.85 16 15 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 16 C -0.12 -2.73 9.63 30.55 0.29 -2.44 16 17 C -0.08 -1.95 2.02 -52.19 -0.11 -2.05 16 18 C -0.07 -1.82 4.32 30.76 0.13 -1.69 16 19 C 0.07 1.27 5.45 86.40 0.47 1.74 16 20 N -0.55 -9.47 4.73 -900.22 -4.26 -13.72 16 21 C 0.14 1.74 5.82 85.56 0.50 2.24 16 22 C -0.02 -0.26 5.13 40.95 0.21 -0.05 16 23 C -0.03 -0.66 11.79 83.52 0.98 0.33 16 24 N -0.54 -11.26 11.25 -200.31 -2.25 -13.51 16 25 C 0.19 2.39 13.04 180.26 2.35 4.74 16 26 N -0.56 -5.45 4.87 -186.49 -0.91 -6.35 16 27 H 0.43 1.56 8.96 -92.71 -0.83 0.73 16 28 C 0.07 1.02 5.02 86.41 0.43 1.45 16 29 C -0.08 -1.49 5.87 30.75 0.18 -1.31 16 30 C 0.12 4.94 7.98 83.10 0.66 5.61 16 31 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 33 H 0.08 3.33 8.10 -2.39 -0.02 3.31 16 34 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.27 6.00 -2.39 -0.01 2.26 16 38 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 39 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 40 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 41 H 0.06 0.56 8.08 -2.38 -0.02 0.54 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 44 H 0.24 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.08 1.22 5.55 -2.38 -0.01 1.21 16 46 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 47 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 48 H 0.06 1.41 8.14 -2.38 -0.02 1.40 16 49 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.08 3.26 8.10 -2.38 -0.02 3.24 16 Total: -1.00 -67.71 401.12 -0.15 -67.85 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.11 Total: 21.75 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 8.06 Total: 5.90 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -10.30 Total: -113.25 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -67.71 -0.15 -67.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278350660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.985 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds