Wall clock time and date at job start Wed Apr 1 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36024 * 120.33784 * 2 1 4 4 C 1.40474 * 119.69705 * 179.97438 * 3 2 1 5 5 C 1.34955 * 120.29658 * 0.02562 * 4 3 2 6 6 N 1.36484 * 120.61264 * 359.97438 * 5 4 3 7 7 C 1.36830 * 132.57009 * 180.02562 * 6 5 4 8 8 C 1.35116 * 107.18123 * 179.35421 * 7 6 5 9 9 C 1.50694 * 125.69003 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47082 * 125.58204 * 9 8 7 11 11 O 1.21280 * 119.99965 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00268 * 180.02562 * 10 9 8 13 13 C 1.46511 * 119.99651 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00412 * 180.02562 * 12 10 9 15 15 C 1.52991 * 109.47487 * 89.99811 * 14 12 10 16 16 C 1.52996 * 109.47346 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.46498 * 120.00275 * 269.99946 * 17 16 15 19 19 C 1.36943 * 119.99839 * 90.00549 * 17 16 15 20 20 H 1.08003 * 119.99873 * 22.34047 * 19 17 16 21 21 C 1.38810 * 119.99720 * 202.34790 * 19 17 16 22 22 N 1.31609 * 120.00270 * 11.33708 * 21 19 17 23 23 Si 1.86803 * 119.99500 * 191.34331 * 21 19 17 24 24 H 1.48498 * 109.47389 * 89.99704 * 23 21 19 25 25 H 1.48503 * 109.46733 * 209.99580 * 23 21 19 26 26 H 1.48502 * 109.47154 * 329.99508 * 23 21 19 27 27 N 1.33514 * 108.61986 * 0.55873 * 8 7 6 28 28 C 1.32556 * 109.16097 * 359.50144 * 27 8 7 29 29 H 1.09004 * 109.46878 * 89.99791 * 1 2 3 30 30 H 1.09001 * 109.47093 * 329.99980 * 1 2 3 31 31 H 1.08996 * 109.46904 * 209.99921 * 1 2 3 32 32 H 1.07996 * 120.15446 * 359.96020 * 3 2 1 33 33 H 1.08001 * 119.85257 * 179.97438 * 4 3 2 34 34 H 1.08005 * 119.69416 * 180.02562 * 5 4 3 35 35 H 1.08002 * 126.40808 * 359.97438 * 7 6 5 36 36 H 1.08999 * 109.47077 * 245.58273 * 9 8 7 37 37 H 1.08998 * 109.47046 * 5.58133 * 9 8 7 38 38 H 1.08997 * 109.47179 * 90.00219 * 13 12 10 39 39 H 1.08999 * 109.47036 * 210.00366 * 13 12 10 40 40 H 1.08997 * 109.46947 * 329.99959 * 13 12 10 41 41 H 1.09009 * 109.46910 * 209.99895 * 14 12 10 42 42 H 1.08999 * 109.46917 * 329.99214 * 14 12 10 43 43 H 1.09000 * 109.47071 * 300.00175 * 15 14 12 44 44 H 1.08999 * 109.47530 * 59.99778 * 15 14 12 45 45 H 1.09000 * 109.47170 * 300.00104 * 16 15 14 46 46 H 1.09005 * 109.46915 * 59.99885 * 16 15 14 47 47 H 1.09000 * 109.46926 * 94.21418 * 18 17 16 48 48 H 1.09000 * 109.46925 * 214.21085 * 18 17 16 49 49 H 1.08998 * 109.47060 * 334.21415 * 18 17 16 50 50 H 0.97002 * 119.99934 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5987 1.1583 0.0005 5 6 4.2664 -0.0145 0.0005 6 7 3.5895 -1.1997 0.0005 7 6 4.0055 -2.5032 0.0010 8 6 2.8972 -3.2759 0.0153 9 6 2.8759 -4.7826 0.0215 10 6 2.0539 -5.2686 1.1874 11 8 1.5366 -4.4699 1.9394 12 7 1.8943 -6.5906 1.3949 13 6 2.5196 -7.5554 0.4868 14 6 1.0947 -7.0630 2.5279 15 6 -0.3646 -7.2149 2.0943 16 6 -1.1997 -7.7077 3.2777 17 7 -2.5972 -7.8526 2.8626 18 6 -3.5217 -6.7240 2.9957 19 6 -3.0393 -9.0430 2.3501 20 1 -2.5079 -9.9569 2.5715 21 6 -4.1703 -9.0752 1.5459 22 7 -4.6875 -7.9531 1.0925 23 14 -4.9582 -10.7111 1.1075 24 1 -5.9784 -11.0588 2.1290 25 1 -5.6069 -10.6069 -0.2244 26 1 -3.9159 -11.7681 1.0691 27 7 1.8239 -2.4818 0.0112 28 6 2.2188 -1.2164 0.0054 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6621 2.1138 -0.0006 33 1 4.1467 2.0889 0.0001 34 1 5.3465 -0.0152 0.0014 35 1 5.0285 -2.8497 0.0011 36 1 2.4366 -5.1437 -0.9084 37 1 3.8944 -5.1600 0.1127 38 1 3.5165 -7.8038 0.8509 39 1 1.9127 -8.4598 0.4436 40 1 2.5946 -7.1204 -0.5098 41 1 1.4759 -8.0271 2.8648 42 1 1.1584 -6.3423 3.3431 43 1 -0.7457 -6.2509 1.7574 44 1 -0.4283 -7.9357 1.2791 45 1 -0.8187 -8.6716 3.6150 46 1 -1.1360 -6.9865 4.0926 47 1 -3.5589 -6.1720 2.0565 48 1 -4.5171 -7.0964 3.2380 49 1 -3.1770 -6.0639 3.7917 50 1 -5.4780 -7.9756 0.5309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280864528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:50 Heat of formation + Delta-G solvation = 55.524489 kcal Electronic energy + Delta-G solvation = -29575.350426 eV Core-core repulsion = 25603.941509 eV Total energy + Delta-G solvation = -3971.408917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.74831 -40.82577 -38.52152 -37.89289 -36.59724 -35.45638 -34.20008 -33.10248 -31.93446 -31.13920 -28.92608 -28.09714 -27.91295 -27.78383 -26.44724 -24.09713 -23.72533 -22.96806 -22.04084 -21.63220 -19.98895 -18.77772 -18.47111 -18.17382 -17.70919 -17.24365 -16.83051 -16.65953 -16.50355 -16.18765 -15.80279 -15.34396 -15.07823 -15.05339 -14.79241 -14.70369 -14.27499 -14.16416 -13.98060 -13.93571 -13.54137 -13.29253 -13.21899 -13.16141 -12.98896 -12.75035 -12.71911 -12.57107 -12.53868 -12.46564 -12.41309 -12.26804 -12.03926 -11.87473 -11.54212 -11.42183 -10.97790 -10.76110 -10.65366 -9.61255 -9.59435 -8.80403 -8.69599 -7.82384 -5.32012 -0.14679 0.36259 1.45248 1.47914 1.56766 1.67693 1.73133 1.82933 2.25972 2.51225 2.58724 3.23044 3.31509 3.46088 3.67122 3.70947 3.86294 3.96615 4.03948 4.13020 4.26339 4.30814 4.34599 4.38648 4.40689 4.53386 4.55434 4.62053 4.68074 4.70251 4.75493 4.77700 4.81455 4.83176 4.91582 4.96399 5.00217 5.08403 5.17974 5.24339 5.26574 5.37201 5.43133 5.60805 5.62593 5.65660 5.66944 5.69548 6.21428 6.32173 6.50021 7.01036 7.12914 7.30972 7.84933 8.31853 9.22448 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.002271 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.009040 B =12326.153410 C =13485.817022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.083 4.083 3 C -0.098 4.098 4 C -0.135 4.135 5 C 0.037 3.963 6 N -0.367 5.367 7 C -0.086 4.086 8 C 0.040 3.960 9 C -0.048 4.048 10 C 0.504 3.496 11 O -0.577 6.577 12 N -0.620 5.620 13 C 0.070 3.930 14 C 0.129 3.871 15 C -0.128 4.128 16 C 0.153 3.847 17 N -0.622 5.622 18 C 0.181 3.819 19 C -0.259 4.259 20 H 0.079 0.921 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.976 3.024 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.262 1.262 27 N -0.521 5.521 28 C 0.194 3.806 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.202 0.798 35 H 0.226 0.774 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.011 0.989 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.046 0.954 47 H -0.007 1.007 48 H 0.022 0.978 49 H 0.021 0.979 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.499 15.591 -4.832 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.155 4.155 5 C -0.084 4.084 6 N -0.038 5.038 7 C -0.217 4.217 8 C -0.093 4.093 9 C -0.088 4.088 10 C 0.293 3.707 11 O -0.455 6.455 12 N -0.353 5.353 13 C -0.072 4.072 14 C 0.005 3.995 15 C -0.169 4.169 16 C 0.026 3.974 17 N -0.345 5.345 18 C 0.035 3.965 19 C -0.389 4.389 20 H 0.097 0.903 21 C -0.257 4.257 22 N -0.593 5.593 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.186 1.186 27 N -0.241 5.241 28 C -0.050 4.050 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.188 0.812 33 H 0.210 0.790 34 H 0.218 0.782 35 H 0.242 0.758 36 H 0.134 0.866 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.011 0.989 48 H 0.041 0.959 49 H 0.039 0.961 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 26.366 15.688 -4.516 31.011 hybrid contribution -0.613 -0.531 -0.438 0.921 sum 25.753 15.157 -4.954 30.290 Atomic orbital electron populations 1.20609 0.89397 1.02949 1.02866 1.19337 0.97282 0.89075 1.02813 1.21380 0.94872 0.97603 0.98318 1.21341 0.94176 0.98540 1.01489 1.22412 1.00448 0.82383 1.03155 1.43031 1.08103 1.07204 1.45454 1.22867 1.01658 0.80245 1.16960 1.20616 0.88829 0.96083 1.03778 1.20120 1.03413 0.88090 0.97206 1.21104 0.80992 0.81938 0.86713 1.90714 1.50308 1.55353 1.49172 1.48061 1.51314 1.06052 1.29826 1.22116 0.98895 0.92505 0.93653 1.21349 0.89260 1.00468 0.88415 1.22278 0.95591 0.98690 1.00386 1.20926 0.83183 0.99159 0.94120 1.44273 1.05562 1.11072 1.73633 1.20475 0.92398 0.88419 0.95174 1.19629 1.09777 0.86389 1.23088 0.90321 1.25950 1.01150 1.00367 0.98238 1.70294 1.24093 1.26996 1.37922 0.85125 0.78519 0.79415 0.76540 1.21248 1.22388 1.18626 1.70575 1.31595 0.99428 1.22515 1.21172 0.81812 0.94457 1.07602 0.90436 0.88466 0.94137 0.81202 0.78970 0.78160 0.75775 0.86606 0.82845 0.89294 0.91015 0.89407 0.87593 0.91959 0.97043 0.93657 0.91750 0.93545 0.98865 0.95887 0.96058 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 10.03 71.24 0.71 -1.74 16 2 C -0.08 -2.04 5.90 -19.72 -0.12 -2.16 16 3 C -0.10 -1.48 9.72 22.30 0.22 -1.26 16 4 C -0.14 -1.39 9.99 22.06 0.22 -1.17 16 5 C 0.04 0.47 10.95 83.21 0.91 1.38 16 6 N -0.37 -8.27 2.94 -352.14 -1.04 -9.30 16 7 C -0.09 -1.81 11.63 83.19 0.97 -0.85 16 8 C 0.04 1.15 5.85 41.58 0.24 1.40 16 9 C -0.05 -1.11 4.81 29.10 0.14 -0.97 16 10 C 0.50 16.59 7.66 87.66 0.67 17.26 16 11 O -0.58 -25.73 15.14 -3.03 -0.05 -25.78 16 12 N -0.62 -17.58 2.87 -846.76 -2.43 -20.02 16 13 C 0.07 1.22 10.24 127.77 1.31 2.52 16 14 C 0.13 4.14 5.41 86.38 0.47 4.60 16 15 C -0.13 -5.43 5.86 30.59 0.18 -5.25 16 16 C 0.15 6.77 5.71 86.38 0.49 7.26 16 17 N -0.62 -34.35 2.93 -726.93 -2.13 -36.48 16 18 C 0.18 10.22 9.01 127.77 1.15 11.37 16 19 C -0.26 -14.93 9.67 84.03 0.81 -14.12 16 20 H 0.08 4.28 7.84 -2.91 -0.02 4.25 16 21 C -0.06 -3.72 5.13 84.86 0.44 -3.28 16 22 N -0.95 -60.04 10.58 21.65 0.23 -59.81 16 23 Si 0.98 46.80 29.57 68.60 2.03 48.83 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 N -0.52 -19.32 10.66 -182.39 -1.94 -21.26 16 28 C 0.19 5.93 7.52 134.11 1.01 6.94 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 31 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.19 0.23 8.06 -2.91 -0.02 0.20 16 34 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.12 2.41 7.40 -2.39 -0.02 2.40 16 37 H 0.15 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16 40 H 0.09 1.21 6.44 -2.39 -0.02 1.19 16 41 H 0.11 2.66 8.07 -2.38 -0.02 2.64 16 42 H 0.06 2.20 7.42 -2.39 -0.02 2.19 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.56 8.03 -2.39 -0.02 2.55 16 46 H 0.05 1.95 7.86 -2.38 -0.02 1.93 16 47 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 48 H 0.02 1.35 7.19 -2.39 -0.02 1.33 16 49 H 0.02 1.06 7.84 -2.39 -0.02 1.04 16 50 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -95.31 412.06 5.41 -89.90 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.92 Total: 11.98 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 9.82 Total: 21.94 kcal Atomic # 7 Polarization: -139.56 SS G_CDS: -7.31 Total: -146.87 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -95.31 5.41 -89.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280864528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.427 kcal (2) G-P(sol) polarization free energy of solvation -95.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds