Wall clock time and date at job start Wed Apr 1 2020 03:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34695 * 125.66701 * 2 1 4 4 C 1.40983 * 107.02800 * 180.02562 * 3 2 1 5 5 C 1.35905 * 106.73859 * 0.22562 * 4 3 2 6 6 C 1.47868 * 125.92995 * 179.77214 * 5 4 3 7 7 N 1.31801 * 126.06512 * 320.37039 * 6 5 4 8 8 N 1.40067 * 108.08475 * 179.90489 * 7 6 5 9 9 H 0.96995 * 125.91239 * 180.16214 * 8 7 6 10 10 C 1.35068 * 108.17733 * 0.35416 * 8 7 6 11 11 C 1.35030 * 108.02939 * 359.79121 * 10 8 7 12 12 C 1.50700 * 126.07784 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47133 * 100.48956 * 12 11 10 14 14 C 1.46904 * 111.00011 * 163.85790 * 13 12 11 15 15 C 1.53241 * 109.33702 * 187.25459 * 14 13 12 16 16 H 1.08998 * 109.63174 * 65.88132 * 15 14 13 17 17 C 1.53002 * 109.62584 * 186.46057 * 15 14 13 18 18 N 1.47082 * 108.52050 * 306.16680 * 15 14 13 19 19 C 1.36942 * 120.88066 * 231.20728 * 18 15 14 20 20 H 1.08004 * 119.99886 * 53.11655 * 19 18 15 21 21 C 1.38811 * 120.00234 * 233.11926 * 19 18 15 22 22 N 1.31620 * 119.99808 * 18.15566 * 21 19 18 23 23 Si 1.86793 * 120.00293 * 198.15610 * 21 19 18 24 24 H 1.48503 * 109.47208 * 89.99700 * 23 21 19 25 25 H 1.48491 * 109.47419 * 209.99852 * 23 21 19 26 26 H 1.48500 * 109.47030 * 330.00182 * 23 21 19 27 27 C 1.47073 * 118.23692 * 51.18864 * 18 15 14 28 28 H 1.09005 * 109.62880 * 68.72088 * 27 18 15 29 29 C 1.52999 * 109.62786 * 189.10014 * 27 18 15 30 30 C 1.46904 * 111.00057 * 288.15826 * 13 12 11 31 31 O 1.34335 * 125.66683 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47570 * 89.99354 * 1 2 3 33 33 H 1.08997 * 109.46926 * 209.99815 * 1 2 3 34 34 H 1.09007 * 109.46551 * 329.99845 * 1 2 3 35 35 H 1.08009 * 126.49104 * 0.06193 * 3 2 1 36 36 H 1.07993 * 126.63269 * 179.97438 * 4 3 2 37 37 H 1.08005 * 125.98165 * 179.78911 * 10 8 7 38 38 H 1.08996 * 109.47074 * 220.48792 * 12 11 10 39 39 H 1.09004 * 109.47349 * 340.49306 * 12 11 10 40 40 H 1.08995 * 109.49018 * 307.21297 * 14 13 12 41 41 H 1.08996 * 109.49242 * 67.29718 * 14 13 12 42 42 H 1.08999 * 109.47423 * 59.99439 * 17 15 14 43 43 H 1.08996 * 109.47571 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.46907 * 299.99830 * 17 15 14 45 45 H 0.96999 * 120.00183 * 184.92946 * 22 21 19 46 46 H 1.08999 * 109.46839 * 51.24090 * 29 27 18 47 47 H 1.09006 * 109.47146 * 171.23650 * 29 27 18 48 48 H 1.09002 * 109.47412 * 291.23629 * 29 27 18 49 49 H 1.08997 * 109.49273 * 292.70772 * 30 13 12 50 50 H 1.09003 * 109.49047 * 52.79069 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6283 0.6437 -0.0006 5 6 3.5832 -0.7146 -0.0061 6 6 4.7511 -1.6215 -0.0134 7 7 5.8652 -1.4465 -0.6957 8 7 6.7149 -2.5266 -0.4253 9 1 7.6038 -2.6566 -0.7910 10 6 6.0806 -3.3579 0.4297 11 6 4.8683 -2.8301 0.7038 12 6 3.8262 -3.4263 1.6146 13 7 3.8679 -2.7476 2.9168 14 6 2.6487 -3.0176 3.6904 15 6 2.6487 -2.1529 4.9556 16 1 2.5720 -1.1011 4.6803 17 6 1.4662 -2.5431 5.8447 18 7 3.9082 -2.3838 5.6792 19 6 3.9056 -2.7003 7.0116 20 1 3.3097 -3.5271 7.3690 21 6 4.6686 -1.9584 7.9027 22 7 5.1025 -0.7635 7.5615 23 14 5.0798 -2.6558 9.5861 24 1 6.3549 -3.4131 9.5103 25 1 5.2212 -1.5448 10.5611 26 1 3.9901 -3.5640 10.0252 27 6 5.1706 -2.2661 4.9338 28 1 5.3381 -1.2246 4.6594 29 6 6.3286 -2.7612 5.8026 30 6 5.0714 -3.1262 3.6694 31 8 2.2903 -1.0914 -0.0005 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8901 0.5139 35 1 1.9615 2.1224 0.0009 36 1 4.5159 1.2589 -0.0012 37 1 6.4742 -4.2829 0.8248 38 1 2.8393 -3.2989 1.1699 39 1 4.0285 -4.4886 1.7520 40 1 1.7739 -2.7778 3.0860 41 1 2.6208 -4.0708 3.9696 42 1 1.5525 -3.5932 6.1239 43 1 1.4689 -1.9271 6.7439 44 1 0.5351 -2.3873 5.2999 45 1 5.6944 -0.2748 8.1546 46 1 6.0900 -3.7487 6.1976 47 1 7.2353 -2.8201 5.2005 48 1 6.4854 -2.0676 6.6287 49 1 5.0097 -4.1779 3.9489 50 1 5.9536 -2.9651 3.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333719883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:35 Heat of formation + Delta-G solvation = 125.474411 kcal Electronic energy + Delta-G solvation = -31714.692287 eV Core-core repulsion = 27746.316626 eV Total energy + Delta-G solvation = -3968.375661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.39316 -41.09319 -38.26828 -34.99179 -33.06940 -32.92846 -32.70105 -31.55926 -30.75092 -30.29886 -27.57299 -26.59205 -26.02353 -25.69087 -24.16371 -22.47560 -21.61424 -21.19719 -20.28800 -20.19651 -19.53111 -18.96973 -17.68296 -16.37011 -16.17349 -16.01109 -15.30485 -14.76847 -14.60019 -14.53006 -14.21578 -14.17720 -13.95747 -13.53896 -13.26645 -13.15662 -12.98990 -12.76100 -12.69883 -12.50345 -12.34465 -11.88743 -11.79420 -11.62436 -11.47370 -11.29371 -10.96532 -10.75089 -10.72760 -10.56330 -10.40847 -10.30715 -10.08183 -9.96759 -9.73949 -9.64984 -9.59767 -9.34163 -8.61960 -8.07035 -7.93573 -7.62418 -6.28017 -5.61322 -3.46311 1.37437 2.00036 2.38140 2.59524 3.06523 3.28379 3.35789 3.44501 3.45390 4.48814 4.52252 4.61774 4.84790 4.96823 5.16181 5.22219 5.28540 5.33202 5.37707 5.40812 5.42377 5.66237 5.72220 5.78018 5.93126 5.94337 5.99256 6.09960 6.10748 6.19317 6.28575 6.30073 6.33487 6.46471 6.50719 6.51517 6.57557 6.66159 6.68351 6.81357 6.91153 7.03349 7.13431 7.23663 7.27557 7.32317 7.56358 7.64647 7.67960 7.82754 7.86863 7.95983 8.69309 9.30806 9.83578 10.63383 11.26363 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.003751 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.313326 B = 7462.379658 C = 8655.243315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.006 4.006 3 C -0.210 4.210 4 C -0.168 4.168 5 C 0.072 3.928 6 C 0.167 3.833 7 N -0.273 5.273 8 N -0.471 5.471 9 H 0.442 0.558 10 C 0.061 3.939 11 C -0.192 4.192 12 C 0.128 3.872 13 N -0.525 5.525 14 C 0.052 3.948 15 C 0.174 3.826 16 H 0.031 0.969 17 C -0.129 4.129 18 N -0.578 5.578 19 C -0.257 4.257 20 H 0.051 0.949 21 C 0.034 3.966 22 N -0.874 5.874 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.201 3.799 28 H 0.033 0.967 29 C -0.141 4.141 30 C 0.047 3.953 31 O -0.161 6.161 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.018 0.982 48 H 0.086 0.914 49 H 0.023 0.977 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -2.821 -16.936 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.229 4.229 4 C -0.189 4.189 5 C 0.020 3.980 6 C 0.002 3.998 7 N -0.099 5.099 8 N -0.180 5.180 9 H 0.286 0.714 10 C -0.086 4.086 11 C -0.204 4.204 12 C -0.001 4.001 13 N -0.249 5.249 14 C -0.077 4.077 15 C 0.067 3.933 16 H 0.048 0.952 17 C -0.187 4.187 18 N -0.303 5.303 19 C -0.388 4.388 20 H 0.068 0.932 21 C -0.167 4.167 22 N -0.514 5.514 23 Si 0.708 3.292 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.201 1.201 27 C 0.095 3.905 28 H 0.051 0.949 29 C -0.199 4.199 30 C -0.082 4.082 31 O -0.057 6.057 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.195 0.805 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.037 0.963 48 H 0.105 0.895 49 H 0.041 0.959 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.464 -1.729 -17.676 17.931 hybrid contribution 0.713 -1.587 1.484 2.287 sum -1.751 -3.316 -16.192 16.621 Atomic orbital electron populations 1.20297 0.85090 1.04287 1.03146 1.22430 0.93819 0.83977 1.05467 1.21448 0.92494 0.99357 1.09619 1.21690 0.98194 0.93034 1.06011 1.18511 0.80528 0.90982 1.07980 1.18939 0.90861 0.93381 0.96604 1.77575 1.01720 1.07903 1.22689 1.46076 1.16629 1.17155 1.38167 0.71394 1.22318 0.93535 0.97647 0.95137 1.20072 0.97580 0.97188 1.05557 1.20328 0.96229 0.94264 0.89309 1.61828 1.03062 1.57790 1.02215 1.22663 0.90874 0.98234 0.95936 1.20518 0.88033 0.95387 0.89320 0.95179 1.21686 0.95495 1.01459 1.00039 1.44016 0.98575 1.81897 1.05824 1.18681 1.28741 1.08819 0.82514 0.93199 1.25521 1.00772 0.93752 0.96702 1.70168 1.33888 1.09630 1.37698 0.86682 0.78842 0.78546 0.85108 1.21062 1.21683 1.20071 1.20233 0.87043 0.95298 0.87918 0.94933 1.21965 0.94761 1.02403 1.00732 1.22807 0.91299 0.97796 0.96313 1.83972 1.15473 1.34770 1.71457 0.90358 0.90421 0.89278 0.83399 0.83416 0.80506 0.90493 0.94754 0.92392 0.95709 0.93354 0.91729 0.94711 0.93736 0.93493 0.96274 0.89541 0.95894 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.41 36.01 0.37 -0.25 16 2 C -0.01 -0.07 7.32 -35.56 -0.26 -0.33 16 3 C -0.21 -2.80 10.78 -39.80 -0.43 -3.23 16 4 C -0.17 -2.56 10.85 -39.38 -0.43 -2.99 16 5 C 0.07 1.17 6.97 -36.48 -0.25 0.91 16 6 C 0.17 2.68 7.07 -82.88 -0.59 2.09 16 7 N -0.27 -4.07 12.75 33.36 0.43 -3.65 16 8 N -0.47 -5.30 7.35 30.41 0.22 -5.08 16 9 H 0.44 3.22 8.96 -182.63 -1.64 1.58 16 10 C 0.06 0.71 11.12 -17.27 -0.19 0.52 16 11 C -0.19 -2.86 4.95 -104.70 -0.52 -3.38 16 12 C 0.13 1.97 5.25 -4.98 -0.03 1.95 16 13 N -0.53 -9.76 4.57 -235.76 -1.08 -10.84 16 14 C 0.05 0.99 4.90 -3.70 -0.02 0.97 16 15 C 0.17 3.84 3.66 -67.49 -0.25 3.59 16 16 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 17 C -0.13 -2.57 8.19 37.16 0.30 -2.27 16 18 N -0.58 -14.36 2.81 -157.00 -0.44 -14.80 16 19 C -0.26 -6.83 6.74 -15.06 -0.10 -6.93 16 20 H 0.05 1.35 7.15 -52.48 -0.38 0.97 16 21 C 0.03 0.93 3.41 -17.43 -0.06 0.87 16 22 N -0.87 -24.93 11.68 55.49 0.65 -24.28 16 23 Si 0.88 21.00 29.59 -169.99 -5.03 15.97 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.20 4.75 3.14 -67.50 -0.21 4.54 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 C -0.14 -3.24 7.95 37.16 0.30 -2.95 16 30 C 0.05 0.93 4.75 -3.70 -0.02 0.91 16 31 O -0.16 -2.50 10.00 4.61 0.05 -2.46 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.08 1.19 7.16 -51.93 -0.37 0.81 16 39 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 40 H 0.06 1.00 7.93 -51.93 -0.41 0.59 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 43 H 0.06 1.42 7.69 -51.93 -0.40 1.02 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 46 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 2.23 5.01 -51.93 -0.26 1.97 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -32.33 397.18 -10.82 -43.15 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -9.22 Total: 1.98 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.37 Total: -5.98 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.22 Total: -58.65 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.05 Total: -2.46 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.33 -10.82 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333719883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.625 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds