Wall clock time and date at job start Wed Apr 1 2020 03:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34695 * 125.66701 * 2 1 4 4 C 1.40983 * 107.02800 * 180.02562 * 3 2 1 5 5 C 1.35905 * 106.73859 * 0.22562 * 4 3 2 6 6 C 1.47868 * 125.92995 * 179.77214 * 5 4 3 7 7 N 1.31801 * 126.06512 * 320.37039 * 6 5 4 8 8 N 1.40067 * 108.08475 * 179.90489 * 7 6 5 9 9 H 0.96995 * 125.91239 * 180.16214 * 8 7 6 10 10 C 1.35068 * 108.17733 * 0.35416 * 8 7 6 11 11 C 1.35030 * 108.02939 * 359.79121 * 10 8 7 12 12 C 1.50700 * 126.07784 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47133 * 100.48956 * 12 11 10 14 14 C 1.46904 * 111.00011 * 163.85790 * 13 12 11 15 15 C 1.53241 * 109.33702 * 187.25459 * 14 13 12 16 16 H 1.08998 * 109.63174 * 65.88132 * 15 14 13 17 17 C 1.53002 * 109.62584 * 186.46057 * 15 14 13 18 18 N 1.47082 * 108.52050 * 306.16680 * 15 14 13 19 19 C 1.36942 * 120.88066 * 231.20728 * 18 15 14 20 20 H 1.08004 * 119.99886 * 53.11655 * 19 18 15 21 21 C 1.38811 * 120.00234 * 233.11926 * 19 18 15 22 22 N 1.31620 * 119.99808 * 18.15566 * 21 19 18 23 23 Si 1.86793 * 120.00293 * 198.15610 * 21 19 18 24 24 H 1.48503 * 109.47208 * 89.99700 * 23 21 19 25 25 H 1.48491 * 109.47419 * 209.99852 * 23 21 19 26 26 H 1.48500 * 109.47030 * 330.00182 * 23 21 19 27 27 C 1.47073 * 118.23692 * 51.18864 * 18 15 14 28 28 H 1.09005 * 109.62880 * 68.72088 * 27 18 15 29 29 C 1.52999 * 109.62786 * 189.10014 * 27 18 15 30 30 C 1.46904 * 111.00057 * 288.15826 * 13 12 11 31 31 O 1.34335 * 125.66683 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47570 * 89.99354 * 1 2 3 33 33 H 1.08997 * 109.46926 * 209.99815 * 1 2 3 34 34 H 1.09007 * 109.46551 * 329.99845 * 1 2 3 35 35 H 1.08009 * 126.49104 * 0.06193 * 3 2 1 36 36 H 1.07993 * 126.63269 * 179.97438 * 4 3 2 37 37 H 1.08005 * 125.98165 * 179.78911 * 10 8 7 38 38 H 1.08996 * 109.47074 * 220.48792 * 12 11 10 39 39 H 1.09004 * 109.47349 * 340.49306 * 12 11 10 40 40 H 1.08995 * 109.49018 * 307.21297 * 14 13 12 41 41 H 1.08996 * 109.49242 * 67.29718 * 14 13 12 42 42 H 1.08999 * 109.47423 * 59.99439 * 17 15 14 43 43 H 1.08996 * 109.47571 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.46907 * 299.99830 * 17 15 14 45 45 H 0.96999 * 120.00183 * 184.92946 * 22 21 19 46 46 H 1.08999 * 109.46839 * 51.24090 * 29 27 18 47 47 H 1.09006 * 109.47146 * 171.23650 * 29 27 18 48 48 H 1.09002 * 109.47412 * 291.23629 * 29 27 18 49 49 H 1.08997 * 109.49273 * 292.70772 * 30 13 12 50 50 H 1.09003 * 109.49047 * 52.79069 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0943 0.0000 4 6 3.6283 0.6437 -0.0006 5 6 3.5832 -0.7146 -0.0061 6 6 4.7511 -1.6215 -0.0134 7 7 5.8652 -1.4465 -0.6957 8 7 6.7149 -2.5266 -0.4253 9 1 7.6038 -2.6566 -0.7910 10 6 6.0806 -3.3579 0.4297 11 6 4.8683 -2.8301 0.7038 12 6 3.8262 -3.4263 1.6146 13 7 3.8679 -2.7476 2.9168 14 6 2.6487 -3.0176 3.6904 15 6 2.6487 -2.1529 4.9556 16 1 2.5720 -1.1011 4.6803 17 6 1.4662 -2.5431 5.8447 18 7 3.9082 -2.3838 5.6792 19 6 3.9056 -2.7003 7.0116 20 1 3.3097 -3.5271 7.3690 21 6 4.6686 -1.9584 7.9027 22 7 5.1025 -0.7635 7.5615 23 14 5.0798 -2.6558 9.5861 24 1 6.3549 -3.4131 9.5103 25 1 5.2212 -1.5448 10.5611 26 1 3.9901 -3.5640 10.0252 27 6 5.1706 -2.2661 4.9338 28 1 5.3381 -1.2246 4.6594 29 6 6.3286 -2.7612 5.8026 30 6 5.0714 -3.1262 3.6694 31 8 2.2903 -1.0914 -0.0005 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8901 0.5139 35 1 1.9615 2.1224 0.0009 36 1 4.5159 1.2589 -0.0012 37 1 6.4742 -4.2829 0.8248 38 1 2.8393 -3.2989 1.1699 39 1 4.0285 -4.4886 1.7520 40 1 1.7739 -2.7778 3.0860 41 1 2.6208 -4.0708 3.9696 42 1 1.5525 -3.5932 6.1239 43 1 1.4689 -1.9271 6.7439 44 1 0.5351 -2.3873 5.2999 45 1 5.6944 -0.2748 8.1546 46 1 6.0900 -3.7487 6.1976 47 1 7.2353 -2.8201 5.2005 48 1 6.4854 -2.0676 6.6287 49 1 5.0097 -4.1779 3.9489 50 1 5.9536 -2.9651 3.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333719883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:34 Heat of formation + Delta-G solvation = 104.788460 kcal Electronic energy + Delta-G solvation = -31715.589297 eV Core-core repulsion = 27746.316626 eV Total energy + Delta-G solvation = -3969.272671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.46004 -42.11368 -39.90684 -36.63290 -34.50834 -34.13210 -33.89689 -33.30310 -31.83507 -31.52127 -29.38090 -27.65598 -27.44371 -27.25153 -25.91273 -23.53912 -23.13283 -22.25745 -21.95125 -21.34873 -20.78877 -20.60614 -18.70367 -18.05861 -17.38186 -17.13393 -17.00429 -16.30960 -16.08969 -16.05012 -15.54283 -15.47289 -15.33754 -14.90670 -14.70144 -14.55471 -13.93604 -13.80952 -13.74086 -13.68253 -13.61812 -13.44512 -13.31165 -13.16118 -12.95721 -12.67782 -12.59652 -12.55029 -12.34338 -12.27231 -12.06380 -11.92404 -11.74521 -11.51320 -11.46389 -11.15643 -11.02281 -10.63718 -10.11978 -9.66971 -9.09116 -8.94073 -8.32753 -7.62609 -5.55394 0.30472 1.00940 1.38889 1.45340 1.48627 1.55397 1.57324 1.99771 2.32343 2.52042 3.24144 3.29519 3.56413 3.63612 3.85863 4.01500 4.08991 4.13623 4.30929 4.36339 4.38375 4.52614 4.57893 4.62437 4.69182 4.70067 4.76488 4.78765 4.79827 4.87581 4.88874 4.91252 4.92572 4.99332 4.99852 5.04939 5.09004 5.09310 5.25668 5.29620 5.44620 5.51085 5.57416 5.64922 5.72954 5.79774 5.86770 6.14660 6.35817 6.38802 6.40573 6.58427 6.61483 7.30011 7.87034 8.62106 9.20015 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.003751 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.313326 B = 7462.379658 C = 8655.243315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 C -0.224 4.224 4 C -0.187 4.187 5 C 0.046 3.954 6 C 0.146 3.854 7 N -0.300 5.300 8 N -0.453 5.453 9 H 0.459 0.541 10 C 0.084 3.916 11 C -0.225 4.225 12 C 0.137 3.863 13 N -0.542 5.542 14 C 0.066 3.934 15 C 0.166 3.834 16 H -0.005 1.005 17 C -0.117 4.117 18 N -0.592 5.592 19 C -0.257 4.257 20 H 0.048 0.952 21 C -0.005 4.005 22 N -0.911 5.911 23 Si 0.936 3.064 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.267 1.267 27 C 0.200 3.800 28 H -0.015 1.015 29 C -0.131 4.131 30 C 0.066 3.934 31 O -0.174 6.174 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.218 0.782 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.248 0.752 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.056 0.944 49 H 0.029 0.971 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -4.982 -17.965 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.243 4.243 4 C -0.208 4.208 5 C -0.005 4.005 6 C -0.018 4.018 7 N -0.127 5.127 8 N -0.164 5.164 9 H 0.307 0.693 10 C -0.064 4.064 11 C -0.237 4.237 12 C 0.009 3.991 13 N -0.266 5.266 14 C -0.063 4.063 15 C 0.060 3.940 16 H 0.012 0.988 17 C -0.175 4.175 18 N -0.317 5.317 19 C -0.387 4.387 20 H 0.065 0.935 21 C -0.204 4.204 22 N -0.552 5.552 23 Si 0.764 3.236 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.192 1.192 27 C 0.094 3.906 28 H 0.003 0.997 29 C -0.189 4.189 30 C -0.063 4.063 31 O -0.070 6.070 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.833 -3.903 -18.739 19.349 hybrid contribution 0.822 -0.850 1.731 2.096 sum -2.012 -4.753 -17.007 17.773 Atomic orbital electron populations 1.20517 0.81958 1.05307 1.04881 1.23308 0.95541 0.83355 1.03706 1.21773 0.91740 1.00762 1.09975 1.21924 0.99213 0.93255 1.06407 1.18801 0.81093 0.91523 1.09115 1.19134 0.91116 0.94112 0.97408 1.77506 1.02121 1.09523 1.23531 1.46132 1.16962 1.15992 1.37364 0.69269 1.22851 0.92181 0.98034 0.93354 1.20156 0.99013 0.97673 1.06814 1.20243 0.96642 0.94942 0.87256 1.61752 1.02375 1.59140 1.03313 1.22418 0.91959 0.97377 0.94526 1.20653 0.87845 0.94284 0.91208 0.98757 1.21560 0.96311 1.00737 0.98888 1.44291 0.99850 1.81786 1.05801 1.18833 1.28180 1.08249 0.83471 0.93503 1.26082 1.00977 0.93781 0.99564 1.70293 1.34977 1.11053 1.38925 0.85783 0.78856 0.77690 0.81302 1.20505 1.22431 1.19183 1.20154 0.86920 0.93625 0.89894 0.99672 1.21814 0.95891 1.01073 1.00164 1.22461 0.92603 0.96725 0.94536 1.83961 1.15463 1.35814 1.71741 0.88145 0.90022 0.87554 0.81126 0.83627 0.76518 0.90759 0.92718 0.90560 0.95255 0.93132 0.94517 0.91219 0.94239 0.93748 0.93495 0.92489 0.95333 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.41 71.24 0.74 -0.35 16 2 C -0.01 -0.21 7.32 24.87 0.18 -0.03 16 3 C -0.22 -5.95 10.78 22.13 0.24 -5.71 16 4 C -0.19 -5.90 10.85 22.40 0.24 -5.66 16 5 C 0.05 1.53 6.97 24.28 0.17 1.70 16 6 C 0.15 4.66 7.07 42.38 0.30 4.96 16 7 N -0.30 -8.79 12.75 -48.36 -0.62 -9.40 16 8 N -0.45 -9.18 7.35 -57.69 -0.42 -9.60 16 9 H 0.46 5.47 8.96 -213.35 -1.91 3.55 16 10 C 0.08 1.71 11.12 83.46 0.93 2.64 16 11 C -0.22 -6.28 4.95 -19.92 -0.10 -6.38 16 12 C 0.14 3.95 5.25 85.56 0.45 4.40 16 13 N -0.54 -19.49 4.57 -899.81 -4.12 -23.60 16 14 C 0.07 2.42 4.90 86.38 0.42 2.84 16 15 C 0.17 7.39 3.66 44.96 0.16 7.55 16 16 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 17 C -0.12 -4.61 8.19 71.98 0.59 -4.02 16 18 N -0.59 -29.77 2.81 -650.64 -1.83 -31.60 16 19 C -0.26 -13.73 6.74 84.03 0.57 -13.16 16 20 H 0.05 2.53 7.15 -2.91 -0.02 2.51 16 21 C -0.01 -0.28 3.41 84.86 0.29 0.01 16 22 N -0.91 -53.64 11.68 21.65 0.25 -53.39 16 23 Si 0.94 43.54 29.59 68.60 2.03 45.57 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.20 9.54 3.14 44.96 0.14 9.68 16 28 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 29 C -0.13 -6.04 7.95 71.98 0.57 -5.47 16 30 C 0.07 2.49 4.75 86.38 0.41 2.90 16 31 O -0.17 -5.40 10.00 -6.42 -0.06 -5.46 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.22 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.07 2.17 7.16 -2.39 -0.02 2.15 16 39 H 0.05 1.36 8.05 -2.38 -0.02 1.34 16 40 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 43 H 0.04 1.61 7.69 -2.39 -0.02 1.60 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 46 H 0.04 2.02 7.65 -2.39 -0.02 2.00 16 47 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.06 2.98 5.01 -2.39 -0.01 2.97 16 49 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.07 2.44 6.73 -2.39 -0.02 2.42 16 Total: -1.00 -73.41 397.18 0.58 -72.84 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.97 Total: 18.76 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.31 Total: -4.11 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -6.73 Total: -127.60 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.06 Total: -5.46 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.41 0.58 -72.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333719883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.625 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds