Wall clock time and date at job start Wed Apr 1 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37999 * 119.50240 * 2 1 4 4 C 1.39974 * 119.17546 * 180.02562 * 3 2 1 5 5 C 1.48165 * 120.87972 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99872 * 213.19328 * 5 4 3 7 7 N 1.34773 * 119.99900 * 33.18816 * 5 4 3 8 8 C 1.47078 * 120.87686 * 185.97018 * 7 5 4 9 9 C 1.53242 * 108.51739 * 128.84256 * 8 7 5 10 10 N 1.46899 * 109.34249 * 53.83110 * 9 8 7 11 11 C 1.46896 * 110.99940 * 172.74697 * 10 9 8 12 12 C 1.50702 * 109.47500 * 64.56764 * 11 10 9 13 13 H 1.07999 * 119.99731 * 4.79570 * 12 11 10 14 14 C 1.37872 * 120.00140 * 184.79550 * 12 11 10 15 15 N 1.31509 * 120.00517 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47465 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47143 * 120.00051 * 16 14 12 19 19 H 1.48501 * 109.47086 * 239.99987 * 16 14 12 20 20 C 1.46905 * 111.26731 * 296.89471 * 10 9 8 21 21 C 1.47079 * 120.88495 * 6.00039 * 7 5 4 22 22 C 1.39542 * 118.23838 * 0.25146 * 4 3 2 23 23 C 1.39082 * 118.92891 * 359.50598 * 22 4 3 24 24 N 1.39024 * 119.64467 * 180.22489 * 23 22 4 25 25 C 1.46509 * 119.99792 * 355.02680 * 24 23 22 26 26 C 1.52999 * 117.49606 * 228.76852 * 25 24 23 27 27 C 1.52999 * 117.49678 * 160.11056 * 25 24 23 28 28 N 1.31890 * 119.50402 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47187 * 90.00134 * 1 2 3 30 30 H 1.08995 * 109.46740 * 209.99757 * 1 2 3 31 31 H 1.08998 * 109.47141 * 329.99389 * 1 2 3 32 32 H 1.08004 * 120.40941 * 0.04950 * 3 2 1 33 33 H 1.08994 * 109.63251 * 9.13007 * 8 7 5 34 34 H 1.08998 * 109.63052 * 248.54615 * 8 7 5 35 35 H 1.09000 * 109.49151 * 173.78742 * 9 8 7 36 36 H 1.08994 * 109.49258 * 293.86487 * 9 8 7 37 37 H 1.08996 * 109.47244 * 184.56711 * 11 10 9 38 38 H 1.08996 * 109.47217 * 304.56663 * 11 10 9 39 39 H 0.96994 * 120.00765 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.49138 * 183.06682 * 20 10 9 41 41 H 1.09001 * 109.48788 * 303.14413 * 20 10 9 42 42 H 1.08996 * 109.63300 * 111.45134 * 21 7 5 43 43 H 1.09003 * 109.78848 * 350.95921 * 21 7 5 44 44 H 1.07992 * 120.53025 * 179.74789 * 22 4 3 45 45 H 0.97003 * 120.00456 * 175.02236 * 24 23 22 46 46 H 1.08999 * 115.54868 * 14.43237 * 25 24 23 47 47 H 1.09006 * 117.50077 * 359.97438 * 26 25 24 48 48 H 1.08991 * 117.50104 * 145.02032 * 26 25 24 49 49 H 1.09000 * 117.49094 * 214.97803 * 27 25 24 50 50 H 1.08998 * 117.50207 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.2011 0.0000 4 6 3.5863 1.1931 -0.0005 5 6 4.3540 2.4603 -0.0011 6 8 5.4217 2.5236 -0.5777 7 7 3.8679 3.5429 0.6377 8 6 4.5467 4.8441 0.5415 9 6 3.5146 5.9029 0.1390 10 7 2.3833 5.8602 1.0752 11 6 1.4540 6.9708 0.8289 12 6 0.8357 6.8152 -0.5366 13 1 1.0462 5.9361 -1.1276 14 6 0.0015 7.7950 -1.0314 15 7 -0.2545 8.8657 -0.3120 16 14 -0.7643 7.6023 -2.7243 17 1 -0.3199 6.3193 -3.3256 18 1 -2.2442 7.6056 -2.6015 19 1 -0.3371 8.7292 -3.5920 20 6 1.6878 4.5678 1.0118 21 6 2.6451 3.4544 1.4501 22 6 4.2395 -0.0400 -0.0065 23 6 3.4788 -1.2044 -0.0011 24 7 4.1142 -2.4409 -0.0021 25 6 5.5728 -2.5148 -0.1188 26 6 6.1505 -3.4852 -1.1511 27 6 6.2538 -3.8050 0.3423 28 7 2.1565 -1.1479 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6451 2.1356 0.0008 33 1 5.3318 4.7927 -0.2128 34 1 4.9797 5.1036 1.5075 35 1 3.9753 6.8903 0.1701 36 1 3.1590 5.6988 -0.8709 37 1 0.6697 6.9630 1.5858 38 1 1.9958 7.9154 0.8769 39 1 -0.8417 9.5549 -0.6599 40 1 0.8237 4.5869 1.6759 41 1 1.3576 4.3823 -0.0102 42 1 2.8953 3.5802 2.5035 43 1 2.1715 2.4842 1.2996 44 1 5.3183 -0.0893 -0.0112 45 1 3.5919 -3.2547 0.0745 46 1 6.1056 -1.5781 0.0448 47 1 5.4454 -4.0688 -1.7431 48 1 7.0636 -3.1871 -1.6662 49 1 7.2349 -3.7170 0.8090 50 1 5.6168 -4.5986 0.7328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471237215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:20 Heat of formation + Delta-G solvation = 63.762517 kcal Electronic energy + Delta-G solvation = -30369.326170 eV Core-core repulsion = 26398.274481 eV Total energy + Delta-G solvation = -3971.051689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00328 -39.55958 -38.10695 -37.54660 -34.77920 -34.22633 -33.12433 -32.28825 -31.00249 -30.31646 -28.30806 -27.38632 -25.70472 -24.14250 -23.60582 -23.08213 -22.80947 -22.16797 -21.23151 -20.33819 -18.99206 -17.85509 -17.35885 -16.65107 -16.46118 -16.24106 -15.75803 -15.28379 -14.92544 -14.85176 -14.77036 -14.57571 -14.30311 -13.90667 -13.63427 -13.53313 -13.34102 -13.26261 -13.07917 -12.75777 -12.33938 -12.25321 -12.01601 -11.92539 -11.85112 -11.62145 -11.20404 -11.07497 -11.00606 -10.90377 -10.72817 -10.65469 -10.33030 -10.21964 -10.02355 -9.90728 -9.71139 -9.64215 -9.36575 -8.50853 -8.48289 -7.83159 -7.31028 -6.10126 -4.19736 0.78692 1.11007 2.62590 2.85316 3.06565 3.21963 3.30931 3.34061 3.40163 3.77217 4.24982 4.30392 4.34876 4.37513 4.50907 4.53277 4.76016 4.85458 4.98299 5.02926 5.20243 5.20432 5.25768 5.33069 5.40331 5.42412 5.44435 5.50512 5.51403 5.56922 5.65310 5.71883 5.75404 5.85960 5.89956 5.95921 6.03192 6.09671 6.30870 6.35914 6.53645 6.66044 6.69691 6.74359 7.15514 7.25581 7.43974 7.49200 7.81579 7.91480 7.95370 8.12979 8.17617 8.20028 8.90191 9.48061 10.95030 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002653 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.533489 B =10551.030841 C =11368.462981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.176 3.824 3 C -0.211 4.211 4 C -0.033 4.033 5 C 0.557 3.443 6 O -0.540 6.540 7 N -0.593 5.593 8 C 0.116 3.884 9 C 0.050 3.950 10 N -0.540 5.540 11 C 0.187 3.813 12 C -0.551 4.551 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.048 3.952 21 C 0.076 3.924 22 C -0.191 4.191 23 C 0.407 3.593 24 N -0.696 5.696 25 C 0.087 3.913 26 C -0.196 4.196 27 C -0.187 4.187 28 N -0.534 5.534 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.406 0.594 46 H 0.134 0.866 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -22.346 3.341 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.039 3.961 3 C -0.233 4.233 4 C -0.044 4.044 5 C 0.345 3.655 6 O -0.418 6.418 7 N -0.325 5.325 8 C -0.006 4.006 9 C -0.079 4.079 10 N -0.264 5.264 11 C 0.062 3.938 12 C -0.590 4.590 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.081 4.081 21 C -0.047 4.047 22 C -0.216 4.216 23 C 0.171 3.829 24 N -0.327 5.327 25 C -0.020 4.020 26 C -0.236 4.236 27 C -0.226 4.226 28 N -0.252 5.252 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.172 0.828 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.158 0.842 45 H 0.242 0.758 46 H 0.151 0.849 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.418 -22.761 3.520 24.522 hybrid contribution -0.608 0.415 -1.818 1.962 sum 7.810 -22.346 1.702 23.732 Atomic orbital electron populations 1.20779 0.88185 1.03848 1.03543 1.20875 0.96609 0.86730 0.91904 1.22220 0.93496 1.00208 1.07356 1.20055 0.93717 0.93463 0.97124 1.18218 0.84943 0.83232 0.79126 1.90744 1.21703 1.84167 1.45220 1.48029 1.27263 1.09157 1.48037 1.21902 0.95517 0.80977 1.02237 1.22255 0.92266 0.97818 0.95594 1.62497 1.10740 1.03416 1.49743 1.19778 0.90427 0.88394 0.95226 1.21754 1.28974 1.05395 1.02911 0.92522 1.24950 0.96297 0.95082 0.97341 1.69938 1.36648 1.08840 1.37304 0.86610 0.79143 0.78173 0.84536 1.19851 1.20868 1.20920 1.22246 0.95523 0.89583 1.00742 1.22810 0.85192 1.01439 0.95213 1.21394 1.01085 0.90339 1.08820 1.18022 0.88017 0.85744 0.91076 1.43710 1.04507 1.04891 1.79606 1.21605 0.80445 0.96070 1.03858 1.23520 1.03625 1.04003 0.92415 1.23393 1.02651 0.98959 0.97590 1.66776 1.07567 1.30484 1.20391 0.90031 0.90395 0.89917 0.82765 0.89421 0.91065 0.90151 0.93845 0.95147 0.94619 0.92781 0.90103 0.93750 0.90995 0.87551 0.84247 0.75793 0.84891 0.88437 0.87870 0.87704 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.16 36.01 0.37 -0.61 16 2 C 0.18 2.13 6.77 -82.65 -0.56 1.57 16 3 C -0.21 -2.72 7.19 -39.02 -0.28 -3.00 16 4 C -0.03 -0.47 5.49 -104.68 -0.58 -1.04 16 5 C 0.56 9.14 7.46 -12.18 -0.09 9.05 16 6 O -0.54 -10.21 16.33 5.36 0.09 -10.12 16 7 N -0.59 -9.36 3.01 -173.46 -0.52 -9.88 16 8 C 0.12 1.86 6.58 -3.60 -0.02 1.84 16 9 C 0.05 0.93 5.24 -3.70 -0.02 0.91 16 10 N -0.54 -10.73 4.83 -235.77 -1.14 -11.87 16 11 C 0.19 4.54 5.11 -4.98 -0.03 4.52 16 12 C -0.55 -14.45 7.76 -34.44 -0.27 -14.72 16 13 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.05 0.84 4.90 -3.70 -0.02 0.82 16 21 C 0.08 1.07 5.74 -3.60 -0.02 1.05 16 22 C -0.19 -2.49 8.95 -38.78 -0.35 -2.84 16 23 C 0.41 4.93 7.64 -155.06 -1.18 3.75 16 24 N -0.70 -6.50 5.75 -53.95 -0.31 -6.81 16 25 C 0.09 0.67 6.29 -67.93 -0.43 0.25 16 26 C -0.20 -1.26 10.46 -26.69 -0.28 -1.54 16 27 C -0.19 -1.07 10.45 -26.69 -0.28 -1.35 16 28 N -0.53 -6.76 10.28 -8.71 -0.09 -6.85 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.16 1.96 5.32 -52.48 -0.28 1.68 16 33 H 0.09 1.42 7.11 -51.93 -0.37 1.05 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 36 H 0.04 0.91 7.09 -51.93 -0.37 0.54 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 41 H 0.04 0.85 6.36 -51.93 -0.33 0.52 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.11 1.33 3.40 -51.93 -0.18 1.15 16 44 H 0.14 1.70 5.85 -52.49 -0.31 1.39 16 45 H 0.41 3.33 8.94 -40.82 -0.36 2.96 16 46 H 0.13 1.05 5.90 -51.93 -0.31 0.74 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -31.19 395.74 -11.85 -43.04 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.43 Total: 4.84 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -4.13 Total: 0.37 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.32 Total: -60.02 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.19 -11.85 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.806 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds