Wall clock time and date at job start Wed Apr 1 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37999 * 119.50240 * 2 1 4 4 C 1.39974 * 119.17546 * 180.02562 * 3 2 1 5 5 C 1.48165 * 120.87972 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99872 * 213.19328 * 5 4 3 7 7 N 1.34773 * 119.99900 * 33.18816 * 5 4 3 8 8 C 1.47078 * 120.87686 * 185.97018 * 7 5 4 9 9 C 1.53242 * 108.51739 * 128.84256 * 8 7 5 10 10 N 1.46899 * 109.34249 * 53.83110 * 9 8 7 11 11 C 1.46896 * 110.99940 * 172.74697 * 10 9 8 12 12 C 1.50702 * 109.47500 * 64.56764 * 11 10 9 13 13 H 1.07999 * 119.99731 * 4.79570 * 12 11 10 14 14 C 1.37872 * 120.00140 * 184.79550 * 12 11 10 15 15 N 1.31509 * 120.00517 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47465 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47143 * 120.00051 * 16 14 12 19 19 H 1.48501 * 109.47086 * 239.99987 * 16 14 12 20 20 C 1.46905 * 111.26731 * 296.89471 * 10 9 8 21 21 C 1.47079 * 120.88495 * 6.00039 * 7 5 4 22 22 C 1.39542 * 118.23838 * 0.25146 * 4 3 2 23 23 C 1.39082 * 118.92891 * 359.50598 * 22 4 3 24 24 N 1.39024 * 119.64467 * 180.22489 * 23 22 4 25 25 C 1.46509 * 119.99792 * 355.02680 * 24 23 22 26 26 C 1.52999 * 117.49606 * 228.76852 * 25 24 23 27 27 C 1.52999 * 117.49678 * 160.11056 * 25 24 23 28 28 N 1.31890 * 119.50402 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47187 * 90.00134 * 1 2 3 30 30 H 1.08995 * 109.46740 * 209.99757 * 1 2 3 31 31 H 1.08998 * 109.47141 * 329.99389 * 1 2 3 32 32 H 1.08004 * 120.40941 * 0.04950 * 3 2 1 33 33 H 1.08994 * 109.63251 * 9.13007 * 8 7 5 34 34 H 1.08998 * 109.63052 * 248.54615 * 8 7 5 35 35 H 1.09000 * 109.49151 * 173.78742 * 9 8 7 36 36 H 1.08994 * 109.49258 * 293.86487 * 9 8 7 37 37 H 1.08996 * 109.47244 * 184.56711 * 11 10 9 38 38 H 1.08996 * 109.47217 * 304.56663 * 11 10 9 39 39 H 0.96994 * 120.00765 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.49138 * 183.06682 * 20 10 9 41 41 H 1.09001 * 109.48788 * 303.14413 * 20 10 9 42 42 H 1.08996 * 109.63300 * 111.45134 * 21 7 5 43 43 H 1.09003 * 109.78848 * 350.95921 * 21 7 5 44 44 H 1.07992 * 120.53025 * 179.74789 * 22 4 3 45 45 H 0.97003 * 120.00456 * 175.02236 * 24 23 22 46 46 H 1.08999 * 115.54868 * 14.43237 * 25 24 23 47 47 H 1.09006 * 117.50077 * 359.97438 * 26 25 24 48 48 H 1.08991 * 117.50104 * 145.02032 * 26 25 24 49 49 H 1.09000 * 117.49094 * 214.97803 * 27 25 24 50 50 H 1.08998 * 117.50207 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.2011 0.0000 4 6 3.5863 1.1931 -0.0005 5 6 4.3540 2.4603 -0.0011 6 8 5.4217 2.5236 -0.5777 7 7 3.8679 3.5429 0.6377 8 6 4.5467 4.8441 0.5415 9 6 3.5146 5.9029 0.1390 10 7 2.3833 5.8602 1.0752 11 6 1.4540 6.9708 0.8289 12 6 0.8357 6.8152 -0.5366 13 1 1.0462 5.9361 -1.1276 14 6 0.0015 7.7950 -1.0314 15 7 -0.2545 8.8657 -0.3120 16 14 -0.7643 7.6023 -2.7243 17 1 -0.3199 6.3193 -3.3256 18 1 -2.2442 7.6056 -2.6015 19 1 -0.3371 8.7292 -3.5920 20 6 1.6878 4.5678 1.0118 21 6 2.6451 3.4544 1.4501 22 6 4.2395 -0.0400 -0.0065 23 6 3.4788 -1.2044 -0.0011 24 7 4.1142 -2.4409 -0.0021 25 6 5.5728 -2.5148 -0.1188 26 6 6.1505 -3.4852 -1.1511 27 6 6.2538 -3.8050 0.3423 28 7 2.1565 -1.1479 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6451 2.1356 0.0008 33 1 5.3318 4.7927 -0.2128 34 1 4.9797 5.1036 1.5075 35 1 3.9753 6.8903 0.1701 36 1 3.1590 5.6988 -0.8709 37 1 0.6697 6.9630 1.5858 38 1 1.9958 7.9154 0.8769 39 1 -0.8417 9.5549 -0.6599 40 1 0.8237 4.5869 1.6759 41 1 1.3576 4.3823 -0.0102 42 1 2.8953 3.5802 2.5035 43 1 2.1715 2.4842 1.2996 44 1 5.3183 -0.0893 -0.0112 45 1 3.5919 -3.2547 0.0745 46 1 6.1056 -1.5781 0.0448 47 1 5.4454 -4.0688 -1.7431 48 1 7.0636 -3.1871 -1.6662 49 1 7.2349 -3.7170 0.8090 50 1 5.6168 -4.5986 0.7328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471237215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:19 Heat of formation + Delta-G solvation = 44.135714 kcal Electronic energy + Delta-G solvation = -30370.177252 eV Core-core repulsion = 26398.274481 eV Total energy + Delta-G solvation = -3971.902771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08000 -40.71414 -39.04995 -38.75393 -36.20569 -35.16434 -34.45588 -33.95357 -32.16239 -31.28748 -29.98000 -28.28038 -27.42082 -25.47101 -24.68753 -24.17945 -23.75373 -23.27158 -22.26930 -21.48355 -20.28541 -18.97951 -18.45030 -18.25124 -17.64160 -17.25239 -16.97724 -16.72434 -16.29476 -15.97351 -15.81697 -15.61284 -15.53616 -15.36307 -15.13243 -14.75267 -14.50481 -14.28631 -13.98871 -13.78501 -13.59516 -13.55857 -13.02098 -12.99940 -12.95252 -12.77937 -12.60049 -12.52621 -12.42494 -12.35000 -12.17934 -11.93910 -11.79393 -11.65845 -11.45894 -11.36531 -10.95509 -10.60996 -10.48128 -10.44388 -9.83655 -9.05004 -8.65718 -8.16130 -6.34728 -0.26649 0.16762 1.34757 1.37936 1.47781 1.61824 1.76721 1.96799 2.36517 2.66539 3.00059 3.09709 3.17154 3.30512 3.45020 3.74461 3.89201 3.93194 3.97012 4.02436 4.02876 4.06567 4.11951 4.28109 4.34142 4.46314 4.51364 4.52878 4.60727 4.73524 4.75125 4.76818 4.83696 4.88253 4.94915 5.01359 5.03705 5.08160 5.13039 5.17930 5.20590 5.22122 5.34735 5.40165 5.49807 5.74477 5.95096 5.99837 6.15358 6.30041 6.45542 6.48655 6.85442 6.89511 7.05852 7.36960 8.86446 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002653 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.533489 B =10551.030841 C =11368.462981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.179 3.821 3 C -0.219 4.219 4 C -0.045 4.045 5 C 0.557 3.443 6 O -0.571 6.571 7 N -0.595 5.595 8 C 0.125 3.875 9 C 0.055 3.945 10 N -0.536 5.536 11 C 0.200 3.800 12 C -0.553 4.553 13 H 0.054 0.946 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.951 3.049 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.282 1.282 20 C 0.050 3.950 21 C 0.087 3.913 22 C -0.199 4.199 23 C 0.406 3.594 24 N -0.686 5.686 25 C 0.062 3.938 26 C -0.193 4.193 27 C -0.169 4.169 28 N -0.543 5.543 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.009 0.991 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.412 0.588 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -24.792 3.369 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.041 3.959 3 C -0.242 4.242 4 C -0.055 4.055 5 C 0.346 3.654 6 O -0.451 6.451 7 N -0.327 5.327 8 C 0.003 3.997 9 C -0.074 4.074 10 N -0.260 5.260 11 C 0.074 3.926 12 C -0.592 4.592 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.208 1.208 20 C -0.079 4.079 21 C -0.035 4.035 22 C -0.225 4.225 23 C 0.170 3.830 24 N -0.317 5.317 25 C -0.044 4.044 26 C -0.232 4.232 27 C -0.207 4.207 28 N -0.263 5.263 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.160 0.840 45 H 0.249 0.751 46 H 0.146 0.854 47 H 0.116 0.884 48 H 0.128 0.872 49 H 0.135 0.865 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.331 -25.253 3.560 26.829 hybrid contribution -0.526 1.089 -1.818 2.184 sum 7.805 -24.164 1.742 25.453 Atomic orbital electron populations 1.20875 0.86151 1.04965 1.04263 1.21305 0.97915 0.86216 0.90493 1.22196 0.92884 1.00680 1.08428 1.19955 0.94209 0.92749 0.98629 1.18549 0.84672 0.83904 0.78278 1.90719 1.23150 1.84792 1.46441 1.48109 1.27594 1.08914 1.48042 1.21764 0.94468 0.80435 1.03053 1.22212 0.92393 0.98830 0.93958 1.62428 1.10276 1.03518 1.49793 1.19442 0.90239 0.88964 0.93967 1.21967 1.28619 1.05072 1.03558 0.92834 1.25723 0.96957 0.94879 1.00869 1.70044 1.37541 1.09651 1.39035 0.85614 0.78490 0.78028 0.80183 1.19502 1.20075 1.20806 1.22300 0.96528 0.89049 1.00025 1.22828 0.83988 1.01165 0.95496 1.21456 1.01394 0.90339 1.09292 1.18189 0.87997 0.86456 0.90362 1.43791 1.05272 1.04180 1.78466 1.21774 0.79565 0.96959 1.06094 1.23561 1.03634 1.03120 0.92931 1.23469 1.02913 0.97398 0.96951 1.66906 1.07714 1.30675 1.20971 0.89367 0.89463 0.88647 0.82709 0.89488 0.89320 0.90417 0.96449 0.96892 0.97290 0.92612 0.89410 0.95546 0.89502 0.85297 0.83962 0.75072 0.85410 0.88417 0.87239 0.86456 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.16 71.24 0.72 -0.98 16 2 C 0.18 4.01 6.77 42.49 0.29 4.30 16 3 C -0.22 -5.41 7.19 22.63 0.16 -5.25 16 4 C -0.04 -1.25 5.49 -19.90 -0.11 -1.35 16 5 C 0.56 18.05 7.46 86.88 0.65 18.70 16 6 O -0.57 -21.60 16.33 -3.75 -0.06 -21.66 16 7 N -0.60 -18.33 3.01 -821.01 -2.47 -20.80 16 8 C 0.13 3.97 6.58 86.35 0.57 4.53 16 9 C 0.06 2.10 5.24 86.38 0.45 2.55 16 10 N -0.54 -21.46 4.83 -899.84 -4.35 -25.80 16 11 C 0.20 9.97 5.11 85.56 0.44 10.41 16 12 C -0.55 -29.40 7.76 25.60 0.20 -29.21 16 13 H 0.05 2.84 5.88 -2.91 -0.02 2.83 16 14 C 0.02 0.85 5.46 84.65 0.46 1.31 16 15 N -0.92 -53.36 13.29 21.44 0.28 -53.08 16 16 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C 0.05 1.70 4.90 86.38 0.42 2.13 16 21 C 0.09 2.34 5.74 86.35 0.50 2.83 16 22 C -0.20 -5.06 8.95 22.79 0.20 -4.85 16 23 C 0.41 9.36 7.64 133.06 1.02 10.38 16 24 N -0.69 -11.78 5.75 -324.59 -1.87 -13.64 16 25 C 0.06 0.87 6.29 44.99 0.28 1.15 16 26 C -0.19 -2.12 10.46 30.62 0.32 -1.80 16 27 C -0.17 -1.53 10.45 30.62 0.32 -1.21 16 28 N -0.54 -12.90 10.28 -181.46 -1.86 -14.76 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.16 3.74 5.32 -2.91 -0.02 3.72 16 33 H 0.09 2.81 7.11 -2.39 -0.02 2.79 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 36 H 0.02 0.74 7.09 -2.39 -0.02 0.72 16 37 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.09 2.87 8.11 -2.39 -0.02 2.85 16 41 H 0.03 1.00 6.36 -2.39 -0.02 0.99 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.13 2.99 3.40 -2.39 -0.01 2.98 16 44 H 0.14 3.44 5.85 -2.91 -0.02 3.42 16 45 H 0.41 6.01 8.94 -92.71 -0.83 5.18 16 46 H 0.13 1.91 5.90 -2.39 -0.01 1.90 16 47 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.10 395.74 -1.25 -68.35 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.15 Total: 22.61 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.89 Total: 13.64 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -10.26 Total: -128.09 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.10 -1.25 -68.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.491 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds