Wall clock time and date at job start Wed Apr 1 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.50082 * 2 1 4 4 N 1.46507 * 109.46844 * 60.00025 * 3 2 1 5 5 C 1.34771 * 119.99628 * 180.02562 * 4 3 2 6 6 O 1.21550 * 120.00496 * 359.97438 * 5 4 3 7 7 C 1.47838 * 119.99546 * 179.97438 * 5 4 3 8 8 C 1.39969 * 120.94058 * 3.79937 * 7 5 4 9 9 N 1.32132 * 118.91944 * 179.97438 * 8 7 5 10 10 C 1.31875 * 120.97238 * 359.97438 * 9 8 7 11 11 N 1.31856 * 122.09376 * 359.74159 * 10 9 8 12 12 C 1.32160 * 120.96665 * 0.52617 * 11 10 9 13 13 C 1.50701 * 120.53719 * 179.76861 * 12 11 10 14 14 C 1.53007 * 117.50097 * 357.01957 * 13 12 11 15 15 C 1.53006 * 60.00006 * 252.51358 * 14 13 12 16 16 C 1.53041 * 109.50223 * 239.93496 * 2 1 3 17 17 C 1.53036 * 109.53763 * 301.35300 * 16 2 1 18 18 C 1.53194 * 109.34038 * 298.67888 * 17 16 2 19 19 N 1.46927 * 108.77209 * 54.61897 * 18 17 16 20 20 C 1.36942 * 120.63182 * 126.41431 * 19 18 17 21 21 H 1.07995 * 119.99773 * 329.17358 * 20 19 18 22 22 C 1.38813 * 119.99922 * 149.16498 * 20 19 18 23 23 N 1.31609 * 120.00337 * 348.73734 * 22 20 19 24 24 Si 1.86803 * 119.99535 * 168.73800 * 22 20 19 25 25 H 1.48501 * 109.47247 * 90.00326 * 24 22 20 26 26 H 1.48504 * 109.46831 * 210.00026 * 24 22 20 27 27 H 1.48498 * 109.47415 * 329.99697 * 24 22 20 28 28 C 1.46930 * 118.74257 * 306.39199 * 19 18 17 29 29 H 1.09007 * 109.46868 * 59.99844 * 1 2 3 30 30 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47470 * 300.00628 * 1 2 3 32 32 H 1.08997 * 109.46960 * 300.00236 * 3 2 1 33 33 H 1.08999 * 109.47085 * 179.97438 * 3 2 1 34 34 H 0.97004 * 119.99842 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.53837 * 359.97438 * 8 7 5 36 36 H 1.08001 * 118.95789 * 179.97438 * 10 9 8 37 37 H 1.08994 * 115.55589 * 142.73319 * 13 12 11 38 38 H 1.09003 * 117.49248 * 0.02562 * 14 13 12 39 39 H 1.08997 * 117.49738 * 145.02513 * 14 13 12 40 40 H 1.08993 * 117.49922 * 252.50938 * 15 14 13 41 41 H 1.09002 * 117.49616 * 107.48734 * 15 14 13 42 42 H 1.09002 * 109.45535 * 61.40026 * 16 2 1 43 43 H 1.09002 * 109.46189 * 181.36127 * 16 2 1 44 44 H 1.09001 * 109.50061 * 178.71114 * 17 16 2 45 45 H 1.08999 * 109.47291 * 58.62814 * 17 16 2 46 46 H 1.08997 * 109.58774 * 294.83676 * 18 17 16 47 47 H 1.08997 * 109.70660 * 174.47406 * 18 17 16 48 48 H 0.97001 * 120.00620 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58515 * 293.82479 * 28 19 18 50 50 H 1.08993 * 109.70644 * 173.46734 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5527 2.1331 1.1962 5 6 1.8785 3.4234 1.4092 6 8 2.5776 4.0138 0.6092 7 6 1.3856 4.1206 2.6161 8 6 0.6456 3.4390 3.5892 9 7 0.2252 4.1013 4.6524 10 6 0.4938 5.3836 4.8033 11 7 1.1919 6.0624 3.9143 12 6 1.6469 5.4803 2.8185 13 6 2.4394 6.2667 1.8063 14 6 2.6299 7.7626 2.0657 15 6 1.6832 7.2924 0.9594 16 6 2.0409 -0.7227 -1.2485 17 6 1.5044 -2.1559 -1.2658 18 6 2.0153 -2.9038 -0.0304 19 7 1.6521 -2.1380 1.1698 20 6 0.9644 -2.7314 2.1946 21 1 0.2707 -3.5326 1.9866 22 6 1.1591 -2.3033 3.5006 23 7 2.1542 -1.4904 3.7852 24 14 0.0086 -2.8811 4.8541 25 1 0.5354 -4.1353 5.4498 26 1 -0.0846 -1.8353 5.9043 27 1 -1.3396 -3.1319 4.2843 28 6 2.0412 -0.7234 1.2498 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6776 1.9563 -0.8899 33 1 3.1307 1.4417 0.0005 34 1 0.9944 1.6620 1.8345 35 1 0.4220 2.3888 3.4729 36 1 0.1337 5.8931 5.6849 37 1 3.2603 5.7295 1.3316 38 1 2.1823 8.1777 2.9688 39 1 3.5764 8.2095 1.7618 40 1 2.0069 7.4301 -0.0722 41 1 0.6125 7.3984 1.1345 42 1 1.6983 -0.1955 -2.1389 43 1 3.1306 -0.7435 -1.2357 44 1 1.8499 -2.6629 -2.1667 45 1 0.4146 -2.1361 -1.2542 46 1 3.0993 -3.0036 -0.0860 47 1 1.5592 -3.8927 0.0153 48 1 2.2906 -1.1915 4.6979 49 1 3.1273 -0.6454 1.2986 50 1 1.6022 -0.2712 2.1391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484176282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:33 Heat of formation + Delta-G solvation = 57.119784 kcal Electronic energy + Delta-G solvation = -31246.730393 eV Core-core repulsion = 27275.390654 eV Total energy + Delta-G solvation = -3971.339740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44161 -39.53657 -38.30120 -37.29872 -34.88100 -33.64132 -33.22409 -32.38097 -31.20125 -29.92038 -26.80314 -26.17406 -25.38878 -25.37174 -24.53841 -22.43784 -22.24775 -21.41172 -20.89357 -20.38578 -18.30071 -17.88611 -17.50094 -17.01613 -16.68758 -15.69285 -15.49940 -15.26543 -15.00858 -14.52942 -14.35019 -14.15175 -14.00132 -13.95396 -13.58152 -13.47400 -13.16162 -12.80174 -12.37231 -12.24358 -12.15256 -11.74864 -11.68240 -11.61535 -11.42475 -11.36661 -10.97967 -10.91629 -10.73937 -10.64456 -10.45694 -10.36565 -10.24961 -10.13193 -9.87698 -9.69976 -9.59015 -9.48764 -9.44083 -9.40292 -8.81856 -8.55892 -6.67469 -5.85859 -3.32789 0.34087 0.86291 2.88472 3.23015 3.31705 3.40363 3.40534 3.53559 3.76293 3.90378 3.95725 4.21169 4.42139 4.63931 4.76092 4.91370 4.96098 4.99829 5.10072 5.21785 5.24863 5.37838 5.46264 5.53965 5.55582 5.63880 5.72332 5.76888 5.90382 5.98244 6.02687 6.04221 6.09785 6.12144 6.18224 6.21163 6.36061 6.39091 6.49014 6.54612 6.66763 6.77116 6.78402 6.82882 6.91456 7.00011 7.23266 7.52426 7.61926 7.71788 7.87093 8.26647 8.39078 9.15102 9.76483 10.35091 11.21625 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.003686 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.998339 B = 7595.189845 C = 9550.275813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.137 3.863 4 N -0.708 5.708 5 C 0.568 3.432 6 O -0.534 6.534 7 C -0.235 4.235 8 C 0.191 3.809 9 N -0.524 5.524 10 C 0.314 3.686 11 N -0.526 5.526 12 C 0.262 3.738 13 C -0.119 4.119 14 C -0.164 4.164 15 C -0.150 4.150 16 C -0.094 4.094 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.249 4.249 21 H 0.064 0.936 22 C 0.006 3.994 23 N -0.905 5.905 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.288 1.288 27 H -0.279 1.279 28 C 0.187 3.813 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.404 0.596 35 H 0.175 0.825 36 H 0.200 0.800 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.018 0.982 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 13.188 -5.280 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C 0.014 3.986 4 N -0.359 5.359 5 C 0.353 3.647 6 O -0.412 6.412 7 C -0.242 4.242 8 C 0.024 3.976 9 N -0.237 5.237 10 C 0.027 3.973 11 N -0.239 5.239 12 C 0.115 3.885 13 C -0.138 4.138 14 C -0.201 4.201 15 C -0.188 4.188 16 C -0.132 4.132 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.311 5.311 20 C -0.379 4.379 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.214 1.214 27 H -0.205 1.205 28 C 0.060 3.940 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.192 0.808 36 H 0.217 0.783 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.969 14.081 -4.842 15.020 hybrid contribution -0.535 -1.141 0.560 1.379 sum -2.505 12.940 -4.282 13.858 Atomic orbital electron populations 1.21723 0.94505 1.02712 0.99382 1.21586 0.96489 0.92624 1.00028 1.21443 0.99056 0.92074 0.86058 1.45998 1.52758 1.11070 1.26122 1.17666 0.80488 0.81888 0.84676 1.90681 1.38214 1.65974 1.46368 1.21616 1.06055 0.96831 0.99706 1.23624 0.87019 1.00361 0.86612 1.68463 1.22532 1.10084 1.22654 1.25198 0.88550 0.87224 0.96328 1.68247 1.12396 1.40258 1.03044 1.20963 0.87938 0.89219 0.90358 1.21365 1.02655 0.90940 0.98812 1.23011 1.01207 0.95223 1.00687 1.22867 0.98065 1.01132 0.96764 1.21335 0.99973 0.96009 0.95930 1.22044 1.00975 0.95690 0.98710 1.20941 0.96389 0.94255 0.86761 1.43943 1.65286 1.05511 1.16336 1.19158 1.16281 1.17163 0.85304 0.91868 1.25103 0.96996 1.00021 0.97171 1.69965 1.29202 1.37057 1.18714 0.86364 0.80668 0.78172 0.82000 1.21389 1.21439 1.20463 1.20794 0.96225 0.83882 0.93076 0.94469 0.90883 0.93828 0.91942 0.91498 0.75854 0.80800 0.78313 0.83063 0.87593 0.88434 0.87976 0.89174 0.93369 0.92532 0.93203 0.91973 0.96574 0.92932 0.93603 0.96428 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.81 37.15 0.29 -1.73 16 2 C -0.11 -1.74 0.53 -154.39 -0.08 -1.82 16 3 C 0.14 2.11 4.57 -4.04 -0.02 2.10 16 4 N -0.71 -10.72 4.95 -61.25 -0.30 -11.02 16 5 C 0.57 8.81 7.76 -12.34 -0.10 8.71 16 6 O -0.53 -9.08 13.52 5.32 0.07 -9.00 16 7 C -0.23 -3.39 5.91 -104.69 -0.62 -4.00 16 8 C 0.19 2.66 10.81 -16.77 -0.18 2.48 16 9 N -0.52 -7.23 10.42 -14.24 -0.15 -7.38 16 10 C 0.31 3.76 12.27 -92.03 -1.13 2.63 16 11 N -0.53 -6.82 9.45 -10.48 -0.10 -6.92 16 12 C 0.26 3.64 6.53 -81.82 -0.53 3.10 16 13 C -0.12 -1.52 4.81 -91.76 -0.44 -1.96 16 14 C -0.16 -1.69 10.04 -26.72 -0.27 -1.96 16 15 C -0.15 -1.61 10.23 -26.72 -0.27 -1.88 16 16 C -0.09 -1.45 4.71 -26.69 -0.13 -1.58 16 17 C -0.14 -2.16 5.74 -26.61 -0.15 -2.31 16 18 C 0.14 2.81 6.52 -3.71 -0.02 2.78 16 19 N -0.59 -13.47 2.43 -172.32 -0.42 -13.89 16 20 C -0.25 -6.34 9.59 -15.06 -0.14 -6.48 16 21 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 22 C 0.01 0.14 5.04 -17.43 -0.09 0.06 16 23 N -0.90 -24.33 11.04 55.49 0.61 -23.72 16 24 Si 0.90 20.58 29.57 -169.99 -5.03 15.55 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 C 0.19 3.94 3.68 -3.71 -0.01 3.93 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 31 H 0.04 0.69 6.86 -51.93 -0.36 0.33 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.40 6.08 4.37 -40.82 -0.18 5.90 16 35 H 0.18 2.28 6.56 -52.49 -0.34 1.94 16 36 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.15 2.14 6.05 -51.93 -0.31 1.82 16 38 H 0.11 1.11 7.58 -51.93 -0.39 0.71 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 48 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.02 4.98 -51.93 -0.26 1.76 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -28.88 389.67 -10.86 -39.74 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.52 Total: 8.69 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.90 Total: 2.07 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.36 Total: -62.92 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.88 -10.86 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484176282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds