Wall clock time and date at job start Wed Apr 1 2020 03:29:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53005 * 109.50082 * 2 1
4 4 N 1.46507 * 109.46844 * 60.00025 * 3 2 1
5 5 C 1.34771 * 119.99628 * 180.02562 * 4 3 2
6 6 O 1.21550 * 120.00496 * 359.97438 * 5 4 3
7 7 C 1.47838 * 119.99546 * 179.97438 * 5 4 3
8 8 C 1.39969 * 120.94058 * 3.79937 * 7 5 4
9 9 N 1.32132 * 118.91944 * 179.97438 * 8 7 5
10 10 C 1.31875 * 120.97238 * 359.97438 * 9 8 7
11 11 N 1.31856 * 122.09376 * 359.74159 * 10 9 8
12 12 C 1.32160 * 120.96665 * 0.52617 * 11 10 9
13 13 C 1.50701 * 120.53719 * 179.76861 * 12 11 10
14 14 C 1.53007 * 117.50097 * 357.01957 * 13 12 11
15 15 C 1.53006 * 60.00006 * 252.51358 * 14 13 12
16 16 C 1.53041 * 109.50223 * 239.93496 * 2 1 3
17 17 C 1.53036 * 109.53763 * 301.35300 * 16 2 1
18 18 C 1.53194 * 109.34038 * 298.67888 * 17 16 2
19 19 N 1.46927 * 108.77209 * 54.61897 * 18 17 16
20 20 C 1.36942 * 120.63182 * 126.41431 * 19 18 17
21 21 H 1.07995 * 119.99773 * 329.17358 * 20 19 18
22 22 C 1.38813 * 119.99922 * 149.16498 * 20 19 18
23 23 N 1.31609 * 120.00337 * 348.73734 * 22 20 19
24 24 Si 1.86803 * 119.99535 * 168.73800 * 22 20 19
25 25 H 1.48501 * 109.47247 * 90.00326 * 24 22 20
26 26 H 1.48504 * 109.46831 * 210.00026 * 24 22 20
27 27 H 1.48498 * 109.47415 * 329.99697 * 24 22 20
28 28 C 1.46930 * 118.74257 * 306.39199 * 19 18 17
29 29 H 1.09007 * 109.46868 * 59.99844 * 1 2 3
30 30 H 1.08992 * 109.47240 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47470 * 300.00628 * 1 2 3
32 32 H 1.08997 * 109.46960 * 300.00236 * 3 2 1
33 33 H 1.08999 * 109.47085 * 179.97438 * 3 2 1
34 34 H 0.97004 * 119.99842 * 359.97438 * 4 3 2
35 35 H 1.08001 * 120.53837 * 359.97438 * 8 7 5
36 36 H 1.08001 * 118.95789 * 179.97438 * 10 9 8
37 37 H 1.08994 * 115.55589 * 142.73319 * 13 12 11
38 38 H 1.09003 * 117.49248 * 0.02562 * 14 13 12
39 39 H 1.08997 * 117.49738 * 145.02513 * 14 13 12
40 40 H 1.08993 * 117.49922 * 252.50938 * 15 14 13
41 41 H 1.09002 * 117.49616 * 107.48734 * 15 14 13
42 42 H 1.09002 * 109.45535 * 61.40026 * 16 2 1
43 43 H 1.09002 * 109.46189 * 181.36127 * 16 2 1
44 44 H 1.09001 * 109.50061 * 178.71114 * 17 16 2
45 45 H 1.08999 * 109.47291 * 58.62814 * 17 16 2
46 46 H 1.08997 * 109.58774 * 294.83676 * 18 17 16
47 47 H 1.08997 * 109.70660 * 174.47406 * 18 17 16
48 48 H 0.97001 * 120.00620 * 180.02562 * 23 22 20
49 49 H 1.08997 * 109.58515 * 293.82479 * 28 19 18
50 50 H 1.08993 * 109.70644 * 173.46734 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0407 1.4423 0.0000
4 7 1.5527 2.1331 1.1962
5 6 1.8785 3.4234 1.4092
6 8 2.5776 4.0138 0.6092
7 6 1.3856 4.1206 2.6161
8 6 0.6456 3.4390 3.5892
9 7 0.2252 4.1013 4.6524
10 6 0.4938 5.3836 4.8033
11 7 1.1919 6.0624 3.9143
12 6 1.6469 5.4803 2.8185
13 6 2.4394 6.2667 1.8063
14 6 2.6299 7.7626 2.0657
15 6 1.6832 7.2924 0.9594
16 6 2.0409 -0.7227 -1.2485
17 6 1.5044 -2.1559 -1.2658
18 6 2.0153 -2.9038 -0.0304
19 7 1.6521 -2.1380 1.1698
20 6 0.9644 -2.7314 2.1946
21 1 0.2707 -3.5326 1.9866
22 6 1.1591 -2.3033 3.5006
23 7 2.1542 -1.4904 3.7852
24 14 0.0086 -2.8811 4.8541
25 1 0.5354 -4.1353 5.4498
26 1 -0.0846 -1.8353 5.9043
27 1 -1.3396 -3.1319 4.2843
28 6 2.0412 -0.7234 1.2498
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 1.6776 1.9563 -0.8899
33 1 3.1307 1.4417 0.0005
34 1 0.9944 1.6620 1.8345
35 1 0.4220 2.3888 3.4729
36 1 0.1337 5.8931 5.6849
37 1 3.2603 5.7295 1.3316
38 1 2.1823 8.1777 2.9688
39 1 3.5764 8.2095 1.7618
40 1 2.0069 7.4301 -0.0722
41 1 0.6125 7.3984 1.1345
42 1 1.6983 -0.1955 -2.1389
43 1 3.1306 -0.7435 -1.2357
44 1 1.8499 -2.6629 -2.1667
45 1 0.4146 -2.1361 -1.2542
46 1 3.0993 -3.0036 -0.0860
47 1 1.5592 -3.8927 0.0153
48 1 2.2906 -1.1915 4.6979
49 1 3.1273 -0.6454 1.2986
50 1 1.6022 -0.2712 2.1391
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484176282.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:29:33
Heat of formation + Delta-G solvation = 57.119784 kcal
Electronic energy + Delta-G solvation = -31246.730393 eV
Core-core repulsion = 27275.390654 eV
Total energy + Delta-G solvation = -3971.339740 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.44161 -39.53657 -38.30120 -37.29872 -34.88100 -33.64132 -33.22409 -32.38097
-31.20125 -29.92038 -26.80314 -26.17406 -25.38878 -25.37174 -24.53841 -22.43784
-22.24775 -21.41172 -20.89357 -20.38578 -18.30071 -17.88611 -17.50094 -17.01613
-16.68758 -15.69285 -15.49940 -15.26543 -15.00858 -14.52942 -14.35019 -14.15175
-14.00132 -13.95396 -13.58152 -13.47400 -13.16162 -12.80174 -12.37231 -12.24358
-12.15256 -11.74864 -11.68240 -11.61535 -11.42475 -11.36661 -10.97967 -10.91629
-10.73937 -10.64456 -10.45694 -10.36565 -10.24961 -10.13193 -9.87698 -9.69976
-9.59015 -9.48764 -9.44083 -9.40292 -8.81856 -8.55892 -6.67469 -5.85859
-3.32789 0.34087 0.86291 2.88472 3.23015 3.31705 3.40363 3.40534
3.53559 3.76293 3.90378 3.95725 4.21169 4.42139 4.63931 4.76092
4.91370 4.96098 4.99829 5.10072 5.21785 5.24863 5.37838 5.46264
5.53965 5.55582 5.63880 5.72332 5.76888 5.90382 5.98244 6.02687
6.04221 6.09785 6.12144 6.18224 6.21163 6.36061 6.39091 6.49014
6.54612 6.66763 6.77116 6.78402 6.82882 6.91456 7.00011 7.23266
7.52426 7.61926 7.71788 7.87093 8.26647 8.39078 9.15102 9.76483
10.35091 11.21625
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.011440 B = 0.003686 C = 0.002931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2446.998339 B = 7595.189845 C = 9550.275813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.105 4.105
3 C 0.137 3.863
4 N -0.708 5.708
5 C 0.568 3.432
6 O -0.534 6.534
7 C -0.235 4.235
8 C 0.191 3.809
9 N -0.524 5.524
10 C 0.314 3.686
11 N -0.526 5.526
12 C 0.262 3.738
13 C -0.119 4.119
14 C -0.164 4.164
15 C -0.150 4.150
16 C -0.094 4.094
17 C -0.135 4.135
18 C 0.143 3.857
19 N -0.589 5.589
20 C -0.249 4.249
21 H 0.064 0.936
22 C 0.006 3.994
23 N -0.905 5.905
24 Si 0.898 3.102
25 H -0.287 1.287
26 H -0.288 1.288
27 H -0.279 1.279
28 C 0.187 3.813
29 H 0.036 0.964
30 H 0.072 0.928
31 H 0.043 0.957
32 H 0.062 0.938
33 H 0.067 0.933
34 H 0.404 0.596
35 H 0.175 0.825
36 H 0.200 0.800
37 H 0.152 0.848
38 H 0.106 0.894
39 H 0.097 0.903
40 H 0.102 0.898
41 H 0.090 0.910
42 H 0.048 0.952
43 H 0.056 0.944
44 H 0.049 0.951
45 H 0.062 0.938
46 H 0.016 0.984
47 H 0.052 0.948
48 H 0.254 0.746
49 H 0.018 0.982
50 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.170 13.188 -5.280 14.371
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.107 4.107
3 C 0.014 3.986
4 N -0.359 5.359
5 C 0.353 3.647
6 O -0.412 6.412
7 C -0.242 4.242
8 C 0.024 3.976
9 N -0.237 5.237
10 C 0.027 3.973
11 N -0.239 5.239
12 C 0.115 3.885
13 C -0.138 4.138
14 C -0.201 4.201
15 C -0.188 4.188
16 C -0.132 4.132
17 C -0.174 4.174
18 C 0.017 3.983
19 N -0.311 5.311
20 C -0.379 4.379
21 H 0.081 0.919
22 C -0.193 4.193
23 N -0.549 5.549
24 Si 0.728 3.272
25 H -0.214 1.214
26 H -0.214 1.214
27 H -0.205 1.205
28 C 0.060 3.940
29 H 0.055 0.945
30 H 0.091 0.909
31 H 0.062 0.938
32 H 0.081 0.919
33 H 0.085 0.915
34 H 0.241 0.759
35 H 0.192 0.808
36 H 0.217 0.783
37 H 0.169 0.831
38 H 0.124 0.876
39 H 0.116 0.884
40 H 0.120 0.880
41 H 0.108 0.892
42 H 0.066 0.934
43 H 0.075 0.925
44 H 0.068 0.932
45 H 0.080 0.920
46 H 0.034 0.966
47 H 0.071 0.929
48 H 0.064 0.936
49 H 0.036 0.964
50 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -1.969 14.081 -4.842 15.020
hybrid contribution -0.535 -1.141 0.560 1.379
sum -2.505 12.940 -4.282 13.858
Atomic orbital electron populations
1.21723 0.94505 1.02712 0.99382 1.21586 0.96489 0.92624 1.00028
1.21443 0.99056 0.92074 0.86058 1.45998 1.52758 1.11070 1.26122
1.17666 0.80488 0.81888 0.84676 1.90681 1.38214 1.65974 1.46368
1.21616 1.06055 0.96831 0.99706 1.23624 0.87019 1.00361 0.86612
1.68463 1.22532 1.10084 1.22654 1.25198 0.88550 0.87224 0.96328
1.68247 1.12396 1.40258 1.03044 1.20963 0.87938 0.89219 0.90358
1.21365 1.02655 0.90940 0.98812 1.23011 1.01207 0.95223 1.00687
1.22867 0.98065 1.01132 0.96764 1.21335 0.99973 0.96009 0.95930
1.22044 1.00975 0.95690 0.98710 1.20941 0.96389 0.94255 0.86761
1.43943 1.65286 1.05511 1.16336 1.19158 1.16281 1.17163 0.85304
0.91868 1.25103 0.96996 1.00021 0.97171 1.69965 1.29202 1.37057
1.18714 0.86364 0.80668 0.78172 0.82000 1.21389 1.21439 1.20463
1.20794 0.96225 0.83882 0.93076 0.94469 0.90883 0.93828 0.91942
0.91498 0.75854 0.80800 0.78313 0.83063 0.87593 0.88434 0.87976
0.89174 0.93369 0.92532 0.93203 0.91973 0.96574 0.92932 0.93603
0.96428 0.89408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.02 7.81 37.15 0.29 -1.73 16
2 C -0.11 -1.74 0.53 -154.39 -0.08 -1.82 16
3 C 0.14 2.11 4.57 -4.04 -0.02 2.10 16
4 N -0.71 -10.72 4.95 -61.25 -0.30 -11.02 16
5 C 0.57 8.81 7.76 -12.34 -0.10 8.71 16
6 O -0.53 -9.08 13.52 5.32 0.07 -9.00 16
7 C -0.23 -3.39 5.91 -104.69 -0.62 -4.00 16
8 C 0.19 2.66 10.81 -16.77 -0.18 2.48 16
9 N -0.52 -7.23 10.42 -14.24 -0.15 -7.38 16
10 C 0.31 3.76 12.27 -92.03 -1.13 2.63 16
11 N -0.53 -6.82 9.45 -10.48 -0.10 -6.92 16
12 C 0.26 3.64 6.53 -81.82 -0.53 3.10 16
13 C -0.12 -1.52 4.81 -91.76 -0.44 -1.96 16
14 C -0.16 -1.69 10.04 -26.72 -0.27 -1.96 16
15 C -0.15 -1.61 10.23 -26.72 -0.27 -1.88 16
16 C -0.09 -1.45 4.71 -26.69 -0.13 -1.58 16
17 C -0.14 -2.16 5.74 -26.61 -0.15 -2.31 16
18 C 0.14 2.81 6.52 -3.71 -0.02 2.78 16
19 N -0.59 -13.47 2.43 -172.32 -0.42 -13.89 16
20 C -0.25 -6.34 9.59 -15.06 -0.14 -6.48 16
21 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16
22 C 0.01 0.14 5.04 -17.43 -0.09 0.06 16
23 N -0.90 -24.33 11.04 55.49 0.61 -23.72 16
24 Si 0.90 20.58 29.57 -169.99 -5.03 15.55 16
25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
26 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16
27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
28 C 0.19 3.94 3.68 -3.71 -0.01 3.93 16
29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16
31 H 0.04 0.69 6.86 -51.93 -0.36 0.33 16
32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
34 H 0.40 6.08 4.37 -40.82 -0.18 5.90 16
35 H 0.18 2.28 6.56 -52.49 -0.34 1.94 16
36 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16
37 H 0.15 2.14 6.05 -51.93 -0.31 1.82 16
38 H 0.11 1.11 7.58 -51.93 -0.39 0.71 16
39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16
41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
45 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16
46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16
48 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16
49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
50 H 0.09 2.02 4.98 -51.93 -0.26 1.76 16
LS Contribution 389.67 15.07 5.87 5.87
Total: -1.00 -28.88 389.67 -10.86 -39.74
By element:
Atomic # 1 Polarization: 16.21 SS G_CDS: -7.52 Total: 8.69 kcal
Atomic # 6 Polarization: 5.97 SS G_CDS: -3.90 Total: 2.07 kcal
Atomic # 7 Polarization: -62.57 SS G_CDS: -0.36 Total: -62.92 kcal
Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.00 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -28.88 -10.86 -39.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484176282.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal
(2) G-P(sol) polarization free energy of solvation -28.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds