Wall clock time and date at job start Wed Apr 1 2020 03:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40566 * 119.82561 * 2 1 4 4 C 1.35902 * 119.73107 * 180.02562 * 3 2 1 5 5 C 1.41181 * 119.34439 * 359.90969 * 4 3 2 6 6 N 1.32239 * 132.04797 * 180.02562 * 5 4 3 7 7 C 1.34580 * 109.02353 * 180.02562 * 6 5 4 8 8 C 1.47591 * 125.91521 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99706 * 186.53694 * 8 7 6 10 10 N 1.34778 * 119.99912 * 6.52684 * 8 7 6 11 11 C 1.46497 * 120.00214 * 4.97240 * 10 8 7 12 12 C 1.46501 * 119.99536 * 185.24338 * 10 8 7 13 13 C 1.53007 * 109.47176 * 269.72548 * 12 10 8 14 14 C 1.53000 * 109.47292 * 300.00284 * 13 12 10 15 15 C 1.53003 * 109.46755 * 60.00623 * 13 12 10 16 16 C 1.52994 * 109.46904 * 180.02562 * 13 12 10 17 17 N 1.46505 * 109.46999 * 180.02562 * 16 13 12 18 18 C 1.36941 * 120.00046 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47487 * 120.00098 * 22 20 18 25 25 H 1.48496 * 109.47022 * 240.00070 * 22 20 18 26 26 C 1.36571 * 108.16308 * 0.26171 * 7 6 5 27 27 N 1.36188 * 107.09826 * 359.58564 * 26 7 6 28 28 C 1.34842 * 119.83081 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47118 * 269.97594 * 1 2 3 30 30 H 1.08995 * 109.47236 * 29.97843 * 1 2 3 31 31 H 1.09006 * 109.46682 * 149.97440 * 1 2 3 32 32 H 1.08005 * 120.13603 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.32617 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47070 * 275.62782 * 11 10 8 35 35 H 1.09002 * 109.46627 * 35.62741 * 11 10 8 36 36 H 1.09002 * 109.46939 * 155.62295 * 11 10 8 37 37 H 1.08994 * 109.47331 * 29.72702 * 12 10 8 38 38 H 1.08997 * 109.46821 * 149.73303 * 12 10 8 39 39 H 1.09006 * 109.47013 * 60.00050 * 14 13 12 40 40 H 1.08997 * 109.46748 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47224 * 300.00153 * 14 13 12 42 42 H 1.09000 * 109.47306 * 59.99572 * 15 13 12 43 43 H 1.08994 * 109.46907 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.46650 * 299.99493 * 15 13 12 45 45 H 1.09000 * 109.47690 * 299.99918 * 16 13 12 46 46 H 1.08998 * 109.47667 * 60.00593 * 16 13 12 47 47 H 0.97004 * 119.99867 * 359.97438 * 17 16 13 48 48 H 0.96997 * 119.99933 * 180.02562 * 21 20 18 49 49 H 1.08007 * 126.45275 * 179.73953 * 26 7 6 50 50 H 1.08004 * 119.68098 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.2195 0.0000 4 6 3.5652 1.2172 -0.0005 5 6 4.2550 -0.0146 0.0009 6 7 5.5445 -0.3075 0.0012 7 6 5.6905 -1.6454 0.0022 8 6 6.9726 -2.3764 0.0033 9 8 6.9826 -3.5864 -0.1158 10 7 8.1323 -1.7027 0.1362 11 6 8.1164 -0.2597 0.3884 12 6 9.4089 -2.4124 0.0224 13 6 9.8418 -2.9080 1.4038 14 6 10.0045 -1.7137 2.3462 15 6 8.7788 -3.8567 1.9614 16 6 11.1752 -3.6486 1.2850 17 7 11.5894 -4.1236 2.6076 18 6 12.7611 -4.8182 2.7496 19 1 13.3799 -5.0154 1.8868 20 6 13.1538 -5.2678 4.0028 21 7 12.4003 -5.0261 5.0547 22 14 14.7523 -6.2146 4.1968 23 1 15.4099 -6.3521 2.8725 24 1 15.6523 -5.4820 5.1233 25 1 14.4651 -7.5630 4.7487 26 6 4.4466 -2.2093 -0.0035 27 7 3.5444 -1.1891 0.0015 28 6 2.1778 -1.1697 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6655 2.1545 0.0004 33 1 4.1120 2.1486 -0.0001 34 1 8.0248 0.2736 -0.5578 35 1 7.2697 -0.0121 1.0286 36 1 9.0430 0.0331 0.8823 37 1 9.2930 -3.2632 -0.6489 38 1 10.1662 -1.7366 -0.3748 39 1 9.0546 -1.1856 2.4309 40 1 10.3124 -2.0668 3.3303 41 1 10.7617 -1.0378 1.9489 42 1 8.6629 -4.7075 1.2900 43 1 9.0869 -4.2093 2.9456 44 1 7.8290 -3.3286 2.0461 45 1 11.0598 -4.4995 0.6136 46 1 11.9324 -2.9725 0.8880 47 1 11.0341 -3.9455 3.3827 48 1 12.6749 -5.3399 5.9304 49 1 4.2209 -3.2655 -0.0083 50 1 1.6298 -2.1005 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485253217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:25 Heat of formation + Delta-G solvation = 75.201457 kcal Electronic energy + Delta-G solvation = -30070.860661 eV Core-core repulsion = 26100.305001 eV Total energy + Delta-G solvation = -3970.555660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.20123 -39.99331 -38.14182 -37.05366 -35.02951 -34.08651 -33.02315 -32.47468 -30.14117 -29.32513 -27.91237 -27.40055 -26.52992 -25.73986 -25.31490 -24.03524 -22.97171 -22.52718 -21.90115 -19.41987 -18.36921 -18.07167 -17.27935 -17.13039 -16.57853 -16.42892 -15.90271 -15.40527 -15.31626 -14.97144 -14.54930 -14.25013 -14.10186 -13.99834 -13.62623 -13.46045 -13.09784 -12.98393 -12.88863 -12.76571 -12.62145 -12.39084 -12.20340 -12.07794 -11.91986 -11.66684 -11.39895 -11.11211 -10.99183 -10.89338 -10.75972 -10.63568 -10.36193 -10.18536 -10.10796 -9.92216 -9.64938 -9.57331 -9.10028 -8.77228 -8.41323 -8.21699 -6.78592 -5.66673 -2.93636 0.22697 0.81997 1.86352 2.10902 2.96733 3.11730 3.47269 3.49709 3.55153 3.57538 3.71475 3.98163 4.17737 4.30226 4.48397 4.68619 4.74283 4.84482 4.98010 4.99827 5.05465 5.29978 5.32385 5.35840 5.37662 5.41060 5.56308 5.56836 5.66406 5.72717 5.76610 5.85709 5.92015 6.02008 6.06803 6.10839 6.20318 6.26392 6.32355 6.44197 6.56142 6.61280 6.70539 6.77843 6.87216 6.91909 7.07977 7.12831 7.31994 7.53911 7.80121 8.28247 8.53077 9.63990 10.24467 10.59322 11.56655 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.001983 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.384064 B =14115.277640 C =14322.640498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.101 4.101 4 C -0.070 4.070 5 C 0.216 3.784 6 N -0.457 5.457 7 C 0.014 3.986 8 C 0.594 3.406 9 O -0.528 6.528 10 N -0.591 5.591 11 C 0.084 3.916 12 C 0.128 3.872 13 C -0.085 4.085 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.165 3.835 17 N -0.728 5.728 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.019 4.019 27 N -0.361 5.361 28 C 0.050 3.950 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.385 0.615 48 H 0.253 0.747 49 H 0.195 0.805 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.207 16.086 -12.831 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.029 4.029 6 N -0.179 5.179 7 C -0.119 4.119 8 C 0.380 3.620 9 O -0.404 6.404 10 N -0.322 5.322 11 C -0.059 4.059 12 C 0.005 3.995 13 C -0.087 4.087 14 C -0.193 4.193 15 C -0.179 4.179 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.364 4.364 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.154 4.154 27 N -0.032 5.032 28 C -0.071 4.071 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.220 0.780 48 H 0.063 0.937 49 H 0.212 0.788 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -26.334 15.844 -12.942 33.347 hybrid contribution 0.093 -0.995 0.505 1.120 sum -26.241 14.849 -12.436 32.615 Atomic orbital electron populations 1.20700 0.88871 1.03583 1.03083 1.19506 0.97355 0.91672 1.02308 1.20995 0.93429 0.98163 0.99875 1.20330 0.93607 0.94710 1.00379 1.21117 0.87571 0.87434 1.06759 1.71117 1.12902 1.13052 1.20857 1.20697 0.93770 0.89890 1.07568 1.16879 0.81877 0.85964 0.77231 1.90834 1.86545 1.12683 1.50315 1.47555 1.05480 1.09489 1.69690 1.22077 1.03138 0.79060 1.01634 1.21617 0.83156 0.96988 0.97691 1.21109 0.96949 0.96240 0.94372 1.21881 0.99983 0.96951 1.00502 1.21714 0.96275 0.98528 1.01358 1.20589 0.91228 0.94885 0.89598 1.42408 1.24971 1.66211 1.03692 1.19303 0.97542 1.26269 0.93303 0.91212 1.24721 0.98919 1.01975 0.95678 1.69678 1.38491 1.51739 0.98517 0.86120 0.83337 0.79427 0.77366 1.20620 1.22021 1.22011 1.22627 0.87304 0.94088 1.11382 1.42699 1.06183 1.08707 1.45649 1.21463 0.80559 1.00648 1.04456 0.90478 0.90607 0.91070 0.83883 0.82834 0.92750 0.89622 0.91199 0.89853 0.90426 0.93529 0.91573 0.93258 0.92465 0.92370 0.94335 0.96264 0.96483 0.77997 0.93713 0.78777 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.23 10.00 36.01 0.36 0.13 16 2 C -0.11 -0.53 5.85 -104.95 -0.61 -1.14 16 3 C -0.10 -0.52 9.73 -39.54 -0.38 -0.90 16 4 C -0.07 -0.51 10.11 -39.30 -0.40 -0.91 16 5 C 0.22 2.30 7.79 -156.03 -1.22 1.09 16 6 N -0.46 -5.80 8.04 -9.35 -0.08 -5.87 16 7 C 0.01 0.19 6.57 -83.45 -0.55 -0.36 16 8 C 0.59 9.32 6.24 -12.44 -0.08 9.24 16 9 O -0.53 -9.55 14.30 5.28 0.08 -9.47 16 10 N -0.59 -8.56 2.39 -182.79 -0.44 -9.00 16 11 C 0.08 1.02 8.01 59.85 0.48 1.49 16 12 C 0.13 1.96 4.57 -4.04 -0.02 1.94 16 13 C -0.09 -1.53 0.60 -154.51 -0.09 -1.63 16 14 C -0.14 -2.35 7.07 37.16 0.26 -2.08 16 15 C -0.12 -2.37 6.90 37.16 0.26 -2.12 16 16 C 0.17 3.54 5.15 -4.04 -0.02 3.52 16 17 N -0.73 -19.20 5.01 -59.91 -0.30 -19.50 16 18 C -0.23 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 21 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 22 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 C -0.02 -0.21 11.47 -16.22 -0.19 -0.40 16 27 N -0.36 -3.54 2.93 -62.37 -0.18 -3.72 16 28 C 0.05 0.32 10.54 -16.59 -0.17 0.15 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 31 H 0.07 0.10 8.07 -51.93 -0.42 -0.32 16 32 H 0.14 0.33 8.06 -52.48 -0.42 -0.10 16 33 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.05 0.62 8.12 -51.93 -0.42 0.19 16 35 H 0.09 1.08 5.91 -51.93 -0.31 0.78 16 36 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 37 H 0.08 1.35 7.49 -51.93 -0.39 0.96 16 38 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 39 H 0.05 0.72 6.07 -51.93 -0.32 0.41 16 40 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 41 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.06 1.17 7.64 -51.93 -0.40 0.78 16 43 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 44 H 0.04 0.72 6.08 -51.93 -0.32 0.40 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.66 5.36 -40.82 -0.22 10.44 16 48 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 50 H 0.16 0.62 8.06 -52.48 -0.42 0.19 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -35.64 394.48 -9.48 -45.12 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.59 Total: 6.31 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.62 Total: 0.51 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.27 Total: -66.56 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.64 -9.48 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485253217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.321 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds