Wall clock time and date at job start Wed Apr 1 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40566 * 119.82561 * 2 1 4 4 C 1.35902 * 119.73107 * 180.02562 * 3 2 1 5 5 C 1.41181 * 119.34439 * 359.90969 * 4 3 2 6 6 N 1.32239 * 132.04797 * 180.02562 * 5 4 3 7 7 C 1.34580 * 109.02353 * 180.02562 * 6 5 4 8 8 C 1.47591 * 125.91521 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99706 * 186.53694 * 8 7 6 10 10 N 1.34778 * 119.99912 * 6.52684 * 8 7 6 11 11 C 1.46497 * 120.00214 * 4.97240 * 10 8 7 12 12 C 1.46501 * 119.99536 * 185.24338 * 10 8 7 13 13 C 1.53007 * 109.47176 * 269.72548 * 12 10 8 14 14 C 1.53000 * 109.47292 * 300.00284 * 13 12 10 15 15 C 1.53003 * 109.46755 * 60.00623 * 13 12 10 16 16 C 1.52994 * 109.46904 * 180.02562 * 13 12 10 17 17 N 1.46505 * 109.46999 * 180.02562 * 16 13 12 18 18 C 1.36941 * 120.00046 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47487 * 120.00098 * 22 20 18 25 25 H 1.48496 * 109.47022 * 240.00070 * 22 20 18 26 26 C 1.36571 * 108.16308 * 0.26171 * 7 6 5 27 27 N 1.36188 * 107.09826 * 359.58564 * 26 7 6 28 28 C 1.34842 * 119.83081 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47118 * 269.97594 * 1 2 3 30 30 H 1.08995 * 109.47236 * 29.97843 * 1 2 3 31 31 H 1.09006 * 109.46682 * 149.97440 * 1 2 3 32 32 H 1.08005 * 120.13603 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.32617 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47070 * 275.62782 * 11 10 8 35 35 H 1.09002 * 109.46627 * 35.62741 * 11 10 8 36 36 H 1.09002 * 109.46939 * 155.62295 * 11 10 8 37 37 H 1.08994 * 109.47331 * 29.72702 * 12 10 8 38 38 H 1.08997 * 109.46821 * 149.73303 * 12 10 8 39 39 H 1.09006 * 109.47013 * 60.00050 * 14 13 12 40 40 H 1.08997 * 109.46748 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47224 * 300.00153 * 14 13 12 42 42 H 1.09000 * 109.47306 * 59.99572 * 15 13 12 43 43 H 1.08994 * 109.46907 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.46650 * 299.99493 * 15 13 12 45 45 H 1.09000 * 109.47690 * 299.99918 * 16 13 12 46 46 H 1.08998 * 109.47667 * 60.00593 * 16 13 12 47 47 H 0.97004 * 119.99867 * 359.97438 * 17 16 13 48 48 H 0.96997 * 119.99933 * 180.02562 * 21 20 18 49 49 H 1.08007 * 126.45275 * 179.73953 * 26 7 6 50 50 H 1.08004 * 119.68098 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.2195 0.0000 4 6 3.5652 1.2172 -0.0005 5 6 4.2550 -0.0146 0.0009 6 7 5.5445 -0.3075 0.0012 7 6 5.6905 -1.6454 0.0022 8 6 6.9726 -2.3764 0.0033 9 8 6.9826 -3.5864 -0.1158 10 7 8.1323 -1.7027 0.1362 11 6 8.1164 -0.2597 0.3884 12 6 9.4089 -2.4124 0.0224 13 6 9.8418 -2.9080 1.4038 14 6 10.0045 -1.7137 2.3462 15 6 8.7788 -3.8567 1.9614 16 6 11.1752 -3.6486 1.2850 17 7 11.5894 -4.1236 2.6076 18 6 12.7611 -4.8182 2.7496 19 1 13.3799 -5.0154 1.8868 20 6 13.1538 -5.2678 4.0028 21 7 12.4003 -5.0261 5.0547 22 14 14.7523 -6.2146 4.1968 23 1 15.4099 -6.3521 2.8725 24 1 15.6523 -5.4820 5.1233 25 1 14.4651 -7.5630 4.7487 26 6 4.4466 -2.2093 -0.0035 27 7 3.5444 -1.1891 0.0015 28 6 2.1778 -1.1697 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6655 2.1545 0.0004 33 1 4.1120 2.1486 -0.0001 34 1 8.0248 0.2736 -0.5578 35 1 7.2697 -0.0121 1.0286 36 1 9.0430 0.0331 0.8823 37 1 9.2930 -3.2632 -0.6489 38 1 10.1662 -1.7366 -0.3748 39 1 9.0546 -1.1856 2.4309 40 1 10.3124 -2.0668 3.3303 41 1 10.7617 -1.0378 1.9489 42 1 8.6629 -4.7075 1.2900 43 1 9.0869 -4.2093 2.9456 44 1 7.8290 -3.3286 2.0461 45 1 11.0598 -4.4995 0.6136 46 1 11.9324 -2.9725 0.8880 47 1 11.0341 -3.9455 3.3827 48 1 12.6749 -5.3399 5.9304 49 1 4.2209 -3.2655 -0.0083 50 1 1.6298 -2.1005 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485253217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:23 Heat of formation + Delta-G solvation = 54.826138 kcal Electronic energy + Delta-G solvation = -30071.744201 eV Core-core repulsion = 26100.305001 eV Total energy + Delta-G solvation = -3971.439200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.92137 -41.18626 -38.96180 -38.33565 -36.45548 -35.05273 -34.55952 -33.08393 -32.14963 -30.07343 -29.00005 -28.42266 -27.76048 -27.26746 -26.69776 -24.93626 -24.35185 -23.28265 -22.97728 -20.49153 -19.84653 -19.17397 -18.91542 -17.96997 -17.46471 -17.28288 -17.03304 -16.66687 -16.44867 -15.98697 -15.57119 -15.50432 -15.37949 -15.20802 -14.85449 -14.44998 -14.38929 -14.19494 -14.09914 -13.82993 -13.71802 -13.30061 -13.23451 -13.12247 -12.93474 -12.82011 -12.57932 -12.49343 -12.44014 -12.40422 -12.20842 -12.05950 -11.90747 -11.67646 -11.64474 -11.51441 -11.36446 -10.93889 -10.88021 -9.84848 -9.54562 -8.95903 -8.90409 -7.93198 -5.21087 -0.34797 0.18302 0.98454 1.42704 1.46586 1.48126 1.58287 2.03836 2.27636 2.53740 2.57558 2.98824 3.36106 3.39985 3.68037 3.81020 3.83742 3.92293 3.97750 3.99532 4.10860 4.23911 4.27930 4.45306 4.45624 4.48125 4.56517 4.67814 4.72088 4.79072 4.83412 4.85874 4.89041 4.92393 4.95175 5.02751 5.08535 5.16412 5.17748 5.20302 5.24419 5.32508 5.34426 5.44942 5.49868 5.53436 5.56585 5.60982 5.93811 6.29212 6.34725 6.58285 7.12818 7.35376 8.12665 8.36736 9.30992 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.001983 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.384064 B =14115.277640 C =14322.640498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C -0.081 4.081 4 C -0.093 4.093 5 C 0.206 3.794 6 N -0.480 5.480 7 C -0.016 4.016 8 C 0.589 3.411 9 O -0.564 6.564 10 N -0.591 5.591 11 C 0.089 3.911 12 C 0.135 3.865 13 C -0.076 4.076 14 C -0.126 4.126 15 C -0.106 4.106 16 C 0.164 3.836 17 N -0.739 5.739 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.295 1.295 26 C -0.025 4.025 27 N -0.362 5.362 28 C 0.027 3.973 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.031 0.969 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.204 0.796 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.023 18.241 -14.047 37.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.113 4.113 5 C -0.040 4.040 6 N -0.203 5.203 7 C -0.149 4.149 8 C 0.377 3.623 9 O -0.443 6.443 10 N -0.321 5.321 11 C -0.053 4.053 12 C 0.012 3.988 13 C -0.077 4.077 14 C -0.183 4.183 15 C -0.163 4.163 16 C 0.037 3.963 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.223 1.223 26 C -0.162 4.162 27 N -0.032 5.032 28 C -0.093 4.093 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.197 0.803 33 H 0.187 0.813 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.049 0.951 47 H 0.209 0.791 48 H 0.059 0.941 49 H 0.221 0.779 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -28.164 18.036 -14.201 36.334 hybrid contribution 0.401 -1.554 0.830 1.807 sum -27.762 16.482 -13.370 34.945 Atomic orbital electron populations 1.20809 0.86361 1.04916 1.04026 1.20007 0.99001 0.91070 0.99758 1.21510 0.92721 0.99722 0.96485 1.20654 0.94633 0.94023 1.01984 1.21678 0.87382 0.88783 1.06150 1.70999 1.14395 1.12374 1.22492 1.20462 0.93420 0.90728 1.10264 1.17244 0.82850 0.85746 0.76429 1.90798 1.87209 1.14181 1.52076 1.47616 1.04831 1.10340 1.69289 1.22129 1.03442 0.77542 1.02220 1.21472 0.84372 0.97517 0.95397 1.21006 0.94552 0.95809 0.96365 1.21781 1.01334 0.96759 0.98449 1.21538 0.97067 0.98436 0.99273 1.20728 0.93235 0.95091 0.87237 1.42598 1.24315 1.66195 1.05167 1.19717 0.98227 1.25779 0.93548 0.90600 1.25585 1.02516 1.03581 0.95472 1.69846 1.40407 1.53246 0.98809 0.85033 0.79257 0.77497 0.77741 1.18982 1.21898 1.22273 1.22720 0.87254 0.94845 1.11365 1.42797 1.07231 1.07928 1.45260 1.22090 0.79332 1.02642 1.05265 0.89528 0.88997 0.90135 0.80294 0.81286 0.91752 0.90067 0.90111 0.90916 0.87651 0.91829 0.94826 0.91527 0.93989 0.95290 0.93827 0.96874 0.95115 0.79148 0.94121 0.77950 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 10.00 71.24 0.71 0.68 16 2 C -0.10 -0.66 5.85 -20.08 -0.12 -0.77 16 3 C -0.08 -0.54 9.73 22.30 0.22 -0.33 16 4 C -0.09 -1.16 10.11 22.45 0.23 -0.94 16 5 C 0.21 4.26 7.79 134.20 1.05 5.30 16 6 N -0.48 -12.25 8.04 -183.49 -1.47 -13.72 16 7 C -0.02 -0.46 6.57 40.80 0.27 -0.20 16 8 C 0.59 19.09 6.24 86.71 0.54 19.63 16 9 O -0.56 -21.38 14.30 -4.01 -0.06 -21.44 16 10 N -0.59 -17.06 2.39 -850.47 -2.04 -19.10 16 11 C 0.09 2.07 8.01 127.77 1.02 3.09 16 12 C 0.14 4.09 4.57 86.38 0.39 4.48 16 13 C -0.08 -2.76 0.60 -52.18 -0.03 -2.79 16 14 C -0.13 -4.32 7.07 71.98 0.51 -3.82 16 15 C -0.11 -4.33 6.90 71.98 0.50 -3.83 16 16 C 0.16 7.09 5.15 86.38 0.44 7.54 16 17 N -0.74 -39.90 5.01 -343.45 -1.72 -41.62 16 18 C -0.24 -14.12 9.99 84.03 0.84 -13.28 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 21 N -0.97 -62.11 13.06 21.65 0.28 -61.82 16 22 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 C -0.03 -0.60 11.47 83.63 0.96 0.36 16 27 N -0.36 -6.89 2.93 -351.25 -1.03 -7.92 16 28 C 0.03 0.30 10.54 83.16 0.88 1.17 16 29 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.09 -0.20 8.09 -2.39 -0.02 -0.22 16 31 H 0.08 -0.07 8.07 -2.38 -0.02 -0.09 16 32 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 35 H 0.08 2.03 5.91 -2.39 -0.01 2.01 16 36 H 0.08 1.68 6.29 -2.39 -0.02 1.67 16 37 H 0.07 2.38 7.49 -2.39 -0.02 2.36 16 38 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 39 H 0.06 1.95 6.07 -2.38 -0.01 1.93 16 40 H 0.03 1.37 6.86 -2.39 -0.02 1.35 16 41 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 42 H 0.04 1.81 7.64 -2.39 -0.02 1.79 16 43 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 44 H 0.04 1.71 6.08 -2.39 -0.01 1.69 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.38 21.60 5.36 -92.71 -0.50 21.10 16 48 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 50 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -79.88 394.48 5.32 -74.55 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.45 Total: 28.93 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 8.87 Total: 11.99 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -5.98 Total: -144.17 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -79.88 5.32 -74.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485253217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.379 kcal (2) G-P(sol) polarization free energy of solvation -79.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds