Wall clock time and date at job start Wed Apr 1 2020 03:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40158 * 120.29234 * 2 1 4 4 C 1.35191 * 120.31591 * 180.02562 * 3 2 1 5 5 N 1.36238 * 120.70594 * 359.95025 * 4 3 2 6 6 N 1.40017 * 132.01346 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60605 * 180.02562 * 6 5 4 8 8 C 1.40555 * 108.74750 * 359.78372 * 7 6 5 9 9 C 1.46559 * 126.58137 * 180.02562 * 8 7 6 10 10 O 1.21726 * 119.99559 * 128.25622 * 9 8 7 11 11 N 1.34774 * 120.00383 * 308.25899 * 9 8 7 12 12 C 1.46498 * 120.00187 * 184.18928 * 11 9 8 13 13 C 1.53001 * 109.47226 * 89.99762 * 12 11 9 14 14 N 1.46498 * 109.47226 * 179.97438 * 13 12 11 15 15 C 1.46507 * 120.00210 * 270.00667 * 14 13 12 16 16 C 1.36935 * 119.99976 * 90.00090 * 14 13 12 17 17 H 1.07994 * 120.00099 * 24.23738 * 16 14 13 18 18 C 1.38814 * 120.00097 * 204.23325 * 16 14 13 19 19 N 1.31622 * 120.00088 * 8.95094 * 18 16 14 20 20 Si 1.86804 * 120.00013 * 188.94626 * 18 16 14 21 21 H 1.48497 * 109.46926 * 60.00603 * 20 18 16 22 22 H 1.48499 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47253 * 300.00003 * 20 18 16 24 24 C 1.46499 * 119.99670 * 4.19271 * 11 9 8 25 25 C 1.52999 * 109.47308 * 122.30596 * 24 11 9 26 26 C 1.53007 * 109.46574 * 242.30369 * 24 11 9 27 27 C 1.36580 * 120.08203 * 0.02586 * 5 4 3 28 28 C 1.36445 * 120.29377 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47153 * 90.00383 * 1 2 3 30 30 H 1.08997 * 109.47375 * 210.00382 * 1 2 3 31 31 H 1.09000 * 109.47148 * 330.00143 * 1 2 3 32 32 H 1.08004 * 119.84397 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.64663 * 179.97438 * 4 3 2 34 34 H 1.08000 * 125.62620 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47519 * 210.00121 * 12 11 9 36 36 H 1.09004 * 109.46957 * 330.00213 * 12 11 9 37 37 H 1.08999 * 109.47325 * 300.00046 * 13 12 11 38 38 H 1.09004 * 109.46784 * 60.00345 * 13 12 11 39 39 H 1.08994 * 109.47127 * 95.07183 * 15 14 13 40 40 H 1.08998 * 109.47125 * 215.07979 * 15 14 13 41 41 H 1.09006 * 109.46480 * 335.07048 * 15 14 13 42 42 H 0.96994 * 119.99978 * 179.97438 * 19 18 16 43 43 H 1.08990 * 109.47250 * 2.29839 * 24 11 9 44 44 H 1.09000 * 109.47062 * 59.99509 * 25 24 11 45 45 H 1.08997 * 109.47153 * 179.97438 * 25 24 11 46 46 H 1.08999 * 109.46727 * 299.99642 * 25 24 11 47 47 H 1.08998 * 109.47093 * 60.00252 * 26 24 11 48 48 H 1.09003 * 109.46970 * 180.02562 * 26 24 11 49 49 H 1.09004 * 109.46873 * 299.99458 * 26 24 11 50 50 H 1.07995 * 120.37957 * 0.04531 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2621 0.0397 0.0000 6 7 5.6352 -0.2343 0.0001 7 6 5.8244 -1.5279 0.0001 8 6 4.5728 -2.1675 0.0050 9 6 4.3307 -3.6129 0.0071 10 8 3.5892 -4.1045 0.8380 11 7 4.9289 -4.3979 -0.9107 12 6 4.6163 -5.8280 -0.9670 13 6 3.4374 -6.0555 -1.9153 14 7 3.1252 -7.4857 -1.9721 15 6 3.7758 -8.3385 -2.9700 16 6 2.2254 -8.0255 -1.0922 17 1 1.4721 -7.3992 -0.6379 18 6 2.2816 -9.3779 -0.7843 19 7 3.2991 -10.1048 -1.1952 20 14 0.9130 -10.1663 0.2132 21 1 -0.3756 -10.0162 -0.5092 22 1 1.2077 -11.6093 0.4039 23 1 0.8189 -9.5006 1.5373 24 6 5.8918 -3.8209 -1.8520 25 6 7.2341 -4.5424 -1.7149 26 6 5.3687 -3.9840 -3.2806 27 6 3.5960 -1.1527 0.0005 28 6 2.1953 -1.1781 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6762 2.1468 0.0004 33 1 4.0997 2.1496 -0.0009 34 1 6.7841 -2.0233 -0.0003 35 1 5.4858 -6.3760 -1.3302 36 1 4.3541 -6.1821 0.0301 37 1 2.5679 -5.5076 -1.5521 38 1 3.6996 -5.7014 -2.9123 39 1 4.6508 -8.8138 -2.5268 40 1 3.0764 -9.1046 -3.3046 41 1 4.0840 -7.7313 -3.8212 42 1 3.3385 -11.0496 -0.9797 43 1 6.0246 -2.7617 -1.6324 44 1 7.1012 -5.6017 -1.9346 45 1 7.9503 -4.1134 -2.4156 46 1 7.6066 -4.4262 -0.6972 47 1 4.4125 -3.4700 -3.3782 48 1 6.0854 -3.5551 -3.9811 49 1 5.2360 -5.0434 -3.5002 50 1 1.6664 -2.1197 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486369274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:10 Heat of formation + Delta-G solvation = 100.717643 kcal Electronic energy + Delta-G solvation = -31018.973985 eV Core-core repulsion = 27049.524790 eV Total energy + Delta-G solvation = -3969.449195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.34522 -39.53095 -37.78445 -36.48749 -35.31375 -33.78970 -31.87996 -31.58443 -30.95982 -29.88439 -28.22675 -27.25976 -26.96467 -25.77262 -24.23833 -23.43045 -22.58731 -22.09607 -21.14156 -20.34251 -18.75867 -17.85809 -16.94259 -16.76836 -16.48659 -15.95269 -15.59623 -15.18078 -15.01141 -14.83054 -14.33247 -14.05549 -13.83307 -13.77821 -13.59997 -13.36330 -13.16456 -12.89640 -12.78787 -12.59140 -12.18970 -12.16830 -12.06738 -12.01566 -11.73615 -11.61443 -11.38271 -11.05315 -11.01868 -10.82678 -10.74858 -10.63792 -10.51138 -10.39553 -10.05726 -9.86130 -9.59479 -9.52070 -9.41515 -8.51639 -8.25581 -7.72913 -6.63768 -5.63695 -3.10612 0.44764 0.79891 1.95576 2.21699 2.95278 3.19716 3.47464 3.50937 3.52927 3.55970 3.99405 4.24508 4.31812 4.58439 4.60313 4.82253 4.89101 4.94919 5.03363 5.12529 5.17106 5.26411 5.30446 5.36364 5.40081 5.53075 5.60850 5.66959 5.68410 5.73050 5.86298 5.89278 5.90455 5.98113 6.05645 6.13205 6.20304 6.24413 6.30594 6.39955 6.50839 6.58932 6.78195 6.79028 6.97294 7.19938 7.27511 7.44086 7.79744 7.88333 7.91964 8.50126 8.66345 9.34054 9.95662 10.44443 11.41282 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.003294 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.957507 B = 8499.327249 C =10032.630518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 C -0.158 4.158 4 C 0.111 3.889 5 N -0.270 5.270 6 N -0.322 5.322 7 C 0.112 3.888 8 C -0.294 4.294 9 C 0.591 3.409 10 O -0.534 6.534 11 N -0.596 5.596 12 C 0.094 3.906 13 C 0.140 3.860 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.250 4.250 17 H 0.068 0.932 18 C 0.002 3.998 19 N -0.912 5.912 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.124 3.876 25 C -0.165 4.165 26 C -0.164 4.164 27 C 0.155 3.845 28 C -0.110 4.110 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.197 0.803 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.043 0.957 41 H -0.006 1.006 42 H 0.252 0.748 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 24.566 -2.190 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.180 4.180 4 C -0.015 4.015 5 N -0.035 5.035 6 N -0.143 5.143 7 C -0.067 4.067 8 C -0.309 4.309 9 C 0.378 3.622 10 O -0.411 6.411 11 N -0.329 5.329 12 C -0.030 4.030 13 C 0.012 3.988 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.380 4.380 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.557 5.557 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.020 3.980 25 C -0.223 4.223 26 C -0.222 4.222 27 C 0.035 3.965 28 C -0.129 4.129 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.174 0.826 33 H 0.188 0.812 34 H 0.214 0.786 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.013 0.987 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.361 25.180 -1.744 25.463 hybrid contribution -0.779 -1.293 0.590 1.620 sum 2.582 23.887 -1.154 24.054 Atomic orbital electron populations 1.20847 0.89459 1.03772 1.03228 1.19996 0.97353 0.92047 0.95726 1.20796 0.91840 0.99547 1.05796 1.21492 0.91995 0.88299 0.99702 1.45967 1.06220 1.05186 1.46175 1.77528 0.88212 1.16847 1.31728 1.23986 0.98546 0.90189 0.93953 1.19816 0.91566 0.93953 1.25533 1.16994 0.80238 0.84199 0.80793 1.90842 1.37583 1.75095 1.37553 1.48107 1.42423 1.09911 1.32431 1.22554 0.99713 0.77147 1.03577 1.21302 0.94971 0.86632 0.95870 1.43939 1.48861 1.02923 1.36464 1.20816 0.97320 0.92053 0.87822 1.19207 1.06475 0.92670 1.19610 0.91435 1.25059 0.97455 0.97646 0.99379 1.70033 1.29373 1.06702 1.49603 0.86327 0.81667 0.78151 0.80394 1.21131 1.21693 1.20830 1.21269 0.88708 0.98320 0.89721 1.22191 0.96092 1.02092 1.01964 1.22285 1.01127 1.03367 0.95439 1.19196 0.92848 0.85620 0.98835 1.20607 0.89984 1.00090 1.02231 0.90161 0.90456 0.90832 0.82638 0.81227 0.78594 0.91305 0.89705 0.93944 0.94020 0.95200 0.93857 0.98703 0.93815 0.89235 0.91400 0.91666 0.92378 0.92474 0.92125 0.91077 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.03 36.01 0.36 -0.39 16 2 C -0.05 -0.41 5.89 -104.55 -0.62 -1.03 16 3 C -0.16 -1.11 9.67 -39.95 -0.39 -1.49 16 4 C 0.11 0.94 11.17 -16.68 -0.19 0.75 16 5 N -0.27 -3.32 3.86 -10.54 -0.04 -3.36 16 6 N -0.32 -4.16 12.57 30.75 0.39 -3.77 16 7 C 0.11 1.42 9.57 -17.15 -0.16 1.26 16 8 C -0.29 -4.45 5.17 -104.68 -0.54 -4.99 16 9 C 0.59 10.68 7.51 -12.91 -0.10 10.58 16 10 O -0.53 -11.94 16.67 5.17 0.09 -11.86 16 11 N -0.60 -9.87 2.40 -167.68 -0.40 -10.27 16 12 C 0.09 1.89 5.24 -4.04 -0.02 1.87 16 13 C 0.14 3.04 5.76 -4.04 -0.02 3.02 16 14 N -0.60 -15.52 2.92 -181.12 -0.53 -16.05 16 15 C 0.16 4.09 9.00 59.85 0.54 4.63 16 16 C -0.25 -7.17 9.66 -15.06 -0.15 -7.31 16 17 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 18 C 0.00 0.07 5.18 -17.43 -0.09 -0.02 16 19 N -0.91 -27.02 10.57 55.49 0.59 -26.43 16 20 Si 0.90 22.73 29.56 -169.99 -5.03 17.71 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.12 1.57 2.94 -67.93 -0.20 1.37 16 25 C -0.17 -1.85 9.13 37.16 0.34 -1.51 16 26 C -0.16 -2.01 8.28 37.16 0.31 -1.71 16 27 C 0.15 2.17 6.79 -84.07 -0.57 1.60 16 28 C -0.11 -1.36 9.73 -39.53 -0.38 -1.75 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.20 1.90 7.61 -52.49 -0.40 1.50 16 35 H 0.07 1.35 6.31 -51.93 -0.33 1.02 16 36 H 0.08 2.04 7.37 -51.93 -0.38 1.66 16 37 H 0.04 0.98 8.04 -51.93 -0.42 0.56 16 38 H 0.04 0.81 5.14 -51.93 -0.27 0.54 16 39 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 40 H 0.04 1.16 7.31 -51.93 -0.38 0.78 16 41 H -0.01 -0.12 7.83 -51.93 -0.41 -0.53 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.09 1.04 4.13 -51.93 -0.21 0.82 16 44 H 0.07 0.87 6.59 -51.93 -0.34 0.52 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.98 6.09 -51.93 -0.32 0.67 16 50 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -35.43 401.58 -8.37 -43.80 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.60 Total: -0.70 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.88 Total: 4.89 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.00 Total: -59.89 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.43 -8.37 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486369274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.519 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds