Wall clock time and date at job start Wed Apr 1 2020 03:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40158 * 120.29234 * 2 1 4 4 C 1.35191 * 120.31591 * 180.02562 * 3 2 1 5 5 N 1.36238 * 120.70594 * 359.95025 * 4 3 2 6 6 N 1.40017 * 132.01346 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60605 * 180.02562 * 6 5 4 8 8 C 1.40555 * 108.74750 * 359.78372 * 7 6 5 9 9 C 1.46559 * 126.58137 * 180.02562 * 8 7 6 10 10 O 1.21726 * 119.99559 * 128.25622 * 9 8 7 11 11 N 1.34774 * 120.00383 * 308.25899 * 9 8 7 12 12 C 1.46498 * 120.00187 * 184.18928 * 11 9 8 13 13 C 1.53001 * 109.47226 * 89.99762 * 12 11 9 14 14 N 1.46498 * 109.47226 * 179.97438 * 13 12 11 15 15 C 1.46507 * 120.00210 * 270.00667 * 14 13 12 16 16 C 1.36935 * 119.99976 * 90.00090 * 14 13 12 17 17 H 1.07994 * 120.00099 * 24.23738 * 16 14 13 18 18 C 1.38814 * 120.00097 * 204.23325 * 16 14 13 19 19 N 1.31622 * 120.00088 * 8.95094 * 18 16 14 20 20 Si 1.86804 * 120.00013 * 188.94626 * 18 16 14 21 21 H 1.48497 * 109.46926 * 60.00603 * 20 18 16 22 22 H 1.48499 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47253 * 300.00003 * 20 18 16 24 24 C 1.46499 * 119.99670 * 4.19271 * 11 9 8 25 25 C 1.52999 * 109.47308 * 122.30596 * 24 11 9 26 26 C 1.53007 * 109.46574 * 242.30369 * 24 11 9 27 27 C 1.36580 * 120.08203 * 0.02586 * 5 4 3 28 28 C 1.36445 * 120.29377 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47153 * 90.00383 * 1 2 3 30 30 H 1.08997 * 109.47375 * 210.00382 * 1 2 3 31 31 H 1.09000 * 109.47148 * 330.00143 * 1 2 3 32 32 H 1.08004 * 119.84397 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.64663 * 179.97438 * 4 3 2 34 34 H 1.08000 * 125.62620 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47519 * 210.00121 * 12 11 9 36 36 H 1.09004 * 109.46957 * 330.00213 * 12 11 9 37 37 H 1.08999 * 109.47325 * 300.00046 * 13 12 11 38 38 H 1.09004 * 109.46784 * 60.00345 * 13 12 11 39 39 H 1.08994 * 109.47127 * 95.07183 * 15 14 13 40 40 H 1.08998 * 109.47125 * 215.07979 * 15 14 13 41 41 H 1.09006 * 109.46480 * 335.07048 * 15 14 13 42 42 H 0.96994 * 119.99978 * 179.97438 * 19 18 16 43 43 H 1.08990 * 109.47250 * 2.29839 * 24 11 9 44 44 H 1.09000 * 109.47062 * 59.99509 * 25 24 11 45 45 H 1.08997 * 109.47153 * 179.97438 * 25 24 11 46 46 H 1.08999 * 109.46727 * 299.99642 * 25 24 11 47 47 H 1.08998 * 109.47093 * 60.00252 * 26 24 11 48 48 H 1.09003 * 109.46970 * 180.02562 * 26 24 11 49 49 H 1.09004 * 109.46873 * 299.99458 * 26 24 11 50 50 H 1.07995 * 120.37957 * 0.04531 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2621 0.0397 0.0000 6 7 5.6352 -0.2343 0.0001 7 6 5.8244 -1.5279 0.0001 8 6 4.5728 -2.1675 0.0050 9 6 4.3307 -3.6129 0.0071 10 8 3.5892 -4.1045 0.8380 11 7 4.9289 -4.3979 -0.9107 12 6 4.6163 -5.8280 -0.9670 13 6 3.4374 -6.0555 -1.9153 14 7 3.1252 -7.4857 -1.9721 15 6 3.7758 -8.3385 -2.9700 16 6 2.2254 -8.0255 -1.0922 17 1 1.4721 -7.3992 -0.6379 18 6 2.2816 -9.3779 -0.7843 19 7 3.2991 -10.1048 -1.1952 20 14 0.9130 -10.1663 0.2132 21 1 -0.3756 -10.0162 -0.5092 22 1 1.2077 -11.6093 0.4039 23 1 0.8189 -9.5006 1.5373 24 6 5.8918 -3.8209 -1.8520 25 6 7.2341 -4.5424 -1.7149 26 6 5.3687 -3.9840 -3.2806 27 6 3.5960 -1.1527 0.0005 28 6 2.1953 -1.1781 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6762 2.1468 0.0004 33 1 4.0997 2.1496 -0.0009 34 1 6.7841 -2.0233 -0.0003 35 1 5.4858 -6.3760 -1.3302 36 1 4.3541 -6.1821 0.0301 37 1 2.5679 -5.5076 -1.5521 38 1 3.6996 -5.7014 -2.9123 39 1 4.6508 -8.8138 -2.5268 40 1 3.0764 -9.1046 -3.3046 41 1 4.0840 -7.7313 -3.8212 42 1 3.3385 -11.0496 -0.9797 43 1 6.0246 -2.7617 -1.6324 44 1 7.1012 -5.6017 -1.9346 45 1 7.9503 -4.1134 -2.4156 46 1 7.6066 -4.4262 -0.6972 47 1 4.4125 -3.4700 -3.3782 48 1 6.0854 -3.5551 -3.9811 49 1 5.2360 -5.0434 -3.5002 50 1 1.6664 -2.1197 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486369274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:08 Heat of formation + Delta-G solvation = 79.191027 kcal Electronic energy + Delta-G solvation = -31019.907449 eV Core-core repulsion = 27049.524790 eV Total energy + Delta-G solvation = -3970.382659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.25756 -40.87125 -38.63327 -38.03204 -37.12170 -34.65276 -33.67849 -32.53033 -32.42717 -30.99730 -29.57280 -28.23739 -28.03023 -27.84287 -25.59686 -24.59858 -23.77000 -23.00010 -22.41077 -22.04805 -19.94323 -18.98058 -18.77350 -17.78283 -17.61143 -17.10752 -16.93475 -16.64891 -16.05686 -16.00702 -15.67001 -15.48472 -15.13834 -15.03533 -14.91474 -14.48004 -14.39247 -14.34106 -13.88679 -13.79928 -13.52711 -13.26526 -13.21507 -12.99963 -12.86734 -12.75967 -12.75426 -12.65323 -12.53372 -12.39997 -12.16227 -12.09355 -12.02970 -11.98014 -11.72820 -11.47916 -11.36500 -10.86391 -10.68113 -10.31279 -9.77268 -8.76802 -8.65633 -7.85015 -5.34786 -0.36978 -0.02871 1.12523 1.16195 1.42548 1.45721 1.52054 1.80690 2.12591 2.36811 2.50539 3.13158 3.29091 3.42843 3.66603 3.74588 3.81331 3.86269 3.95125 4.03220 4.15759 4.18884 4.24976 4.38601 4.42697 4.53951 4.57683 4.60207 4.73586 4.74933 4.79645 4.80504 4.84233 4.88274 4.97981 4.98893 5.05003 5.07338 5.13388 5.25412 5.31585 5.33641 5.39556 5.41978 5.43240 5.59994 5.68559 5.73472 5.75971 6.32286 6.36167 6.54227 7.14847 7.26901 7.84438 8.26618 9.17406 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.003294 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.957507 B = 8499.327249 C =10032.630518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.019 4.019 3 C -0.145 4.145 4 C 0.107 3.893 5 N -0.273 5.273 6 N -0.332 5.332 7 C 0.124 3.876 8 C -0.337 4.337 9 C 0.591 3.409 10 O -0.594 6.594 11 N -0.591 5.591 12 C 0.116 3.884 13 C 0.148 3.852 14 N -0.615 5.615 15 C 0.179 3.821 16 C -0.267 4.267 17 H 0.055 0.945 18 C -0.045 4.045 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.284 1.284 24 C 0.120 3.880 25 C -0.161 4.161 26 C -0.161 4.161 27 C 0.148 3.852 28 C -0.159 4.159 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.207 0.793 33 H 0.209 0.791 34 H 0.221 0.779 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.009 0.991 40 H 0.018 0.982 41 H 0.033 0.967 42 H 0.250 0.750 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 28.498 -3.193 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.024 4.024 3 C -0.166 4.166 4 C -0.018 4.018 5 N -0.037 5.037 6 N -0.153 5.153 7 C -0.055 4.055 8 C -0.352 4.352 9 C 0.380 3.620 10 O -0.475 6.475 11 N -0.323 5.323 12 C -0.010 4.010 13 C 0.021 3.979 14 N -0.338 5.338 15 C 0.034 3.966 16 C -0.397 4.397 17 H 0.073 0.927 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.018 3.982 25 C -0.219 4.219 26 C -0.219 4.219 27 C 0.027 3.973 28 C -0.179 4.179 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.224 0.776 33 H 0.226 0.774 34 H 0.237 0.763 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.612 29.164 -2.787 29.518 hybrid contribution -0.965 -2.257 0.879 2.608 sum 2.647 26.906 -1.908 27.104 Atomic orbital electron populations 1.20986 0.87496 1.04736 1.04330 1.20460 0.98801 0.91630 0.91523 1.21394 0.91429 1.00370 1.03406 1.22437 0.92876 0.88362 0.98119 1.46221 1.05999 1.05638 1.45852 1.77460 0.88712 1.16630 1.32512 1.24259 0.98513 0.89998 0.92708 1.19511 0.93413 0.92139 1.30121 1.17489 0.78964 0.85642 0.79868 1.90790 1.40316 1.76424 1.39988 1.48091 1.42947 1.08240 1.32985 1.21925 0.99157 0.79679 1.00202 1.21302 0.94620 0.84376 0.97563 1.44125 1.48917 1.04350 1.36454 1.20597 0.95574 0.91908 0.88496 1.19374 1.07121 0.93099 1.20131 0.92683 1.25762 0.99729 0.97996 1.00589 1.70182 1.30682 1.06629 1.50472 0.85372 0.79361 0.77157 0.78747 1.20097 1.21146 1.21034 1.21595 0.88379 0.99257 0.88980 1.22179 0.95709 1.00883 1.03130 1.22253 1.01640 1.02307 0.95656 1.19310 0.93336 0.86311 0.98350 1.20541 0.89872 1.00642 1.06858 0.88768 0.91706 0.87684 0.77650 0.77396 0.76273 0.90533 0.94518 0.96272 0.91139 0.97260 0.96346 0.94844 0.94075 0.87493 0.93208 0.88302 0.92177 0.93496 0.88807 0.92726 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.03 71.24 0.71 -0.53 16 2 C -0.02 -0.30 5.89 -19.82 -0.12 -0.42 16 3 C -0.15 -1.41 9.67 22.03 0.21 -1.19 16 4 C 0.11 1.41 11.17 83.31 0.93 2.34 16 5 N -0.27 -6.25 3.86 -187.27 -0.72 -6.97 16 6 N -0.33 -8.06 12.57 -56.62 -0.71 -8.78 16 7 C 0.12 3.07 9.57 85.42 0.82 3.89 16 8 C -0.34 -10.61 5.17 -19.90 -0.10 -10.71 16 9 C 0.59 23.01 7.51 86.41 0.65 23.66 16 10 O -0.59 -29.32 16.67 -4.43 -0.07 -29.39 16 11 N -0.59 -20.59 2.40 -802.62 -1.93 -22.51 16 12 C 0.12 4.95 5.24 86.38 0.45 5.40 16 13 C 0.15 6.76 5.76 86.38 0.50 7.25 16 14 N -0.61 -33.14 2.92 -726.93 -2.12 -35.27 16 15 C 0.18 9.08 9.00 127.77 1.15 10.23 16 16 C -0.27 -16.01 9.66 84.03 0.81 -15.20 16 17 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 18 C -0.05 -2.69 5.18 84.86 0.44 -2.25 16 19 N -0.93 -56.94 10.57 21.65 0.23 -56.71 16 20 Si 0.97 48.08 29.56 68.60 2.03 50.11 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 24 C 0.12 2.96 2.94 44.99 0.13 3.09 16 25 C -0.16 -3.36 9.13 71.98 0.66 -2.71 16 26 C -0.16 -3.72 8.28 71.98 0.60 -3.12 16 27 C 0.15 4.23 6.79 39.50 0.27 4.50 16 28 C -0.16 -4.14 9.73 22.30 0.22 -3.92 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16 32 H 0.21 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.22 3.95 7.61 -2.91 -0.02 3.93 16 35 H 0.08 3.13 6.31 -2.39 -0.02 3.12 16 36 H 0.04 1.92 7.37 -2.38 -0.02 1.90 16 37 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 38 H 0.07 2.78 5.14 -2.38 -0.01 2.77 16 39 H 0.01 0.50 7.33 -2.39 -0.02 0.48 16 40 H 0.02 0.99 7.31 -2.39 -0.02 0.97 16 41 H 0.03 1.41 7.83 -2.38 -0.02 1.39 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.11 2.34 4.13 -2.39 -0.01 2.33 16 44 H 0.05 1.23 6.59 -2.39 -0.02 1.22 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.05 1.44 6.09 -2.39 -0.01 1.43 16 50 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -84.26 401.58 5.97 -78.29 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.94 Total: 10.93 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 8.33 Total: 20.31 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -5.26 Total: -130.24 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.07 Total: -29.39 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -84.26 5.97 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486369274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.477 kcal (2) G-P(sol) polarization free energy of solvation -84.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds