Wall clock time and date at job start Wed Apr 1 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33814 * 126.08336 * 2 1 4 4 H 0.96999 * 124.99213 * 0.02562 * 3 2 1 5 5 N 1.39928 * 110.02631 * 180.02562 * 3 2 1 6 6 C 1.31921 * 109.06441 * 359.97438 * 5 3 2 7 7 C 1.41382 * 134.39673 * 179.97438 * 6 5 3 8 8 C 1.35183 * 119.93238 * 179.70393 * 7 6 5 9 9 C 1.41047 * 121.65373 * 0.61007 * 8 7 6 10 10 C 1.47513 * 119.39415 * 179.67412 * 9 8 7 11 11 O 1.21600 * 120.00414 * 179.72919 * 10 9 8 12 12 N 1.34777 * 119.99652 * 359.73505 * 10 9 8 13 13 C 1.46507 * 119.99542 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47280 * 324.99739 * 13 12 10 15 15 C 1.53002 * 109.46688 * 204.99971 * 13 12 10 16 16 N 1.46502 * 109.47184 * 55.00234 * 15 13 12 17 17 C 1.36936 * 119.99724 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00414 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00170 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99525 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00314 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47311 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47211 * 120.00020 * 21 19 17 24 24 H 1.48504 * 109.47000 * 239.99599 * 21 19 17 25 25 C 1.52992 * 109.47485 * 85.00034 * 13 12 10 26 26 C 1.52997 * 109.47482 * 179.97438 * 25 13 12 27 27 C 1.53006 * 109.47223 * 59.99555 * 25 13 12 28 28 C 1.52999 * 109.46961 * 300.00204 * 25 13 12 29 29 C 1.38216 * 121.21328 * 359.40617 * 9 8 7 30 30 C 1.38548 * 126.08330 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47411 * 269.97430 * 1 2 3 32 32 H 1.09006 * 109.47011 * 29.97567 * 1 2 3 33 33 H 1.09005 * 109.47134 * 149.97498 * 1 2 3 34 34 H 1.08002 * 120.02952 * 0.02562 * 7 6 5 35 35 H 1.07999 * 119.17405 * 180.28895 * 8 7 6 36 36 H 0.96997 * 120.00436 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46816 * 175.00210 * 15 13 12 38 38 H 1.09000 * 109.47059 * 294.99866 * 15 13 12 39 39 H 0.96991 * 120.00214 * 359.97438 * 16 15 13 40 40 H 0.97006 * 119.99349 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47153 * 59.99783 * 26 25 13 42 42 H 1.09001 * 109.46832 * 299.99974 * 26 25 13 43 43 H 1.09004 * 109.47261 * 179.97438 * 26 25 13 44 44 H 1.08993 * 109.46955 * 180.02562 * 27 25 13 45 45 H 1.09000 * 109.47050 * 300.00346 * 27 25 13 46 46 H 1.09001 * 109.47002 * 60.00080 * 27 25 13 47 47 H 1.09002 * 109.46716 * 299.99630 * 28 25 13 48 48 H 1.09000 * 109.47486 * 59.99547 * 28 25 13 49 49 H 1.09001 * 109.47362 * 180.02562 * 28 25 13 50 50 H 1.08006 * 120.33106 * 180.25286 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0814 0.0000 4 1 1.9805 1.9990 0.0004 5 7 3.6398 0.6944 -0.0006 6 6 3.7090 -0.6230 -0.0004 7 6 4.7697 -1.5578 -0.0012 8 6 4.5012 -2.8826 0.0053 9 6 3.1775 -3.3697 0.0003 10 6 2.9417 -4.8258 0.0006 11 8 1.8050 -5.2578 0.0012 12 7 3.9863 -5.6775 0.0002 13 6 3.7522 -7.1238 0.0010 14 1 2.8635 -7.3477 0.5912 15 6 4.9617 -7.8358 0.6101 16 7 5.2321 -7.2870 1.9413 17 6 6.2752 -7.7734 2.6833 18 1 6.8982 -8.5618 2.2874 19 6 6.5318 -7.2532 3.9444 20 7 5.7728 -6.2920 4.4267 21 14 7.9551 -7.9161 4.9564 22 1 8.6490 -8.9850 4.1940 23 1 8.9094 -6.8164 5.2483 24 1 7.4380 -8.4742 6.2317 25 6 3.5455 -7.6078 -1.4355 26 6 3.3016 -9.1182 -1.4347 27 6 4.7928 -7.2935 -2.2641 28 6 2.3361 -6.8957 -2.0446 29 6 2.0971 -2.5076 0.0006 30 6 2.3230 -1.1197 -0.0005 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 5.7934 -1.2136 -0.0018 35 1 5.3208 -3.5859 0.0094 36 1 4.8930 -5.3330 -0.0006 37 1 4.7520 -8.9022 0.6924 38 1 5.8318 -7.6849 -0.0288 39 1 4.6724 -6.5793 2.2970 40 1 5.9524 -5.9282 5.3078 41 1 2.4132 -9.3425 -0.8444 42 1 4.1636 -9.6252 -1.0010 43 1 3.1539 -9.4630 -2.4582 44 1 4.6454 -7.6380 -3.2876 45 1 4.9670 -6.2175 -2.2647 46 1 5.6545 -7.8008 -1.8302 47 1 1.4474 -7.1196 -1.4544 48 1 2.5102 -5.8197 -2.0452 49 1 2.1885 -7.2409 -3.0680 50 1 1.0893 -2.8961 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486404338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:05 Heat of formation + Delta-G solvation = 34.996251 kcal Electronic energy + Delta-G solvation = -30700.268969 eV Core-core repulsion = 26727.969881 eV Total energy + Delta-G solvation = -3972.299088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.45828 -41.29435 -38.93786 -37.58045 -36.14914 -34.58165 -34.12922 -32.98468 -31.77888 -31.21159 -29.35306 -28.25688 -28.09887 -27.56379 -25.82653 -24.96349 -23.89055 -22.94544 -21.48729 -21.01011 -19.83145 -19.24193 -18.76538 -18.32028 -17.38216 -17.13622 -16.85503 -16.42409 -16.21961 -15.68366 -15.32075 -15.26654 -15.17929 -14.96289 -14.78990 -14.55111 -14.32763 -14.16499 -13.88597 -13.81126 -13.58422 -13.13927 -13.02765 -12.99859 -12.90837 -12.74641 -12.70845 -12.53962 -12.43860 -12.29678 -12.10319 -11.96955 -11.71077 -11.57299 -11.38670 -11.24413 -11.18832 -10.95100 -10.76913 -9.94829 -9.77979 -8.94827 -8.64448 -7.90157 -5.19226 -0.53043 0.37715 1.26655 1.49747 1.50200 1.60131 1.68691 2.01312 2.32545 2.58872 2.91961 3.17718 3.44182 3.45731 3.70732 3.82860 3.88743 3.94388 4.01335 4.11563 4.25435 4.29729 4.36337 4.44039 4.49438 4.54526 4.68861 4.69976 4.72682 4.88660 4.89106 4.95252 5.02114 5.06483 5.09668 5.12199 5.13981 5.21008 5.30004 5.32317 5.33512 5.36816 5.41991 5.50883 5.55067 5.61898 5.67914 5.75684 6.15825 6.30303 6.48183 6.69246 7.36887 7.37690 8.12329 8.35929 9.32926 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.003495 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.649909 B = 8008.727940 C =10225.585502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.160 3.840 3 N -0.410 5.410 4 H 0.460 0.540 5 N -0.343 5.343 6 C 0.107 3.893 7 C -0.126 4.126 8 C -0.046 4.046 9 C -0.198 4.198 10 C 0.564 3.436 11 O -0.574 6.574 12 N -0.702 5.702 13 C 0.159 3.841 14 H 0.056 0.944 15 C 0.144 3.856 16 N -0.743 5.743 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.298 1.298 25 C -0.070 4.070 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.120 4.120 29 C 0.046 3.954 30 C -0.250 4.250 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.404 0.596 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.061 0.939 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 11.699 -16.206 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.018 3.982 3 N -0.111 5.111 4 H 0.308 0.692 5 N -0.171 5.171 6 C -0.047 4.047 7 C -0.147 4.147 8 C -0.069 4.069 9 C -0.203 4.203 10 C 0.353 3.647 11 O -0.456 6.456 12 N -0.352 5.352 13 C 0.054 3.946 14 H 0.075 0.925 15 C 0.017 3.983 16 N -0.386 5.386 17 C -0.370 4.370 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.226 1.226 25 C -0.072 4.072 26 C -0.197 4.197 27 C -0.195 4.195 28 C -0.177 4.177 29 C 0.024 3.976 30 C -0.260 4.260 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.241 0.759 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.492 12.392 -16.193 22.932 hybrid contribution 0.585 -0.112 1.325 1.453 sum -9.907 12.280 -14.868 21.680 Atomic orbital electron populations 1.20879 0.82385 1.06662 1.05823 1.21990 0.96184 0.85900 0.94084 1.46301 1.03772 1.09766 1.51305 0.69158 1.77586 0.94686 1.11955 1.32876 1.21234 0.94958 0.91319 0.97212 1.19867 0.97583 0.90713 1.06546 1.20760 0.95573 0.95585 0.94932 1.19476 0.94533 0.92293 1.14013 1.18249 0.84594 0.86558 0.75258 1.90705 1.23025 1.79378 1.52521 1.45790 1.09345 1.06231 1.73805 1.21097 0.97726 0.79462 0.96295 0.92534 1.21238 0.95032 0.96103 0.85901 1.42555 1.35712 1.44741 1.15542 1.19650 1.05660 1.14603 0.97134 0.90313 1.25513 1.02107 0.99802 0.99137 1.69854 1.42432 1.31080 1.18460 0.85121 0.78994 0.77482 0.78435 1.18831 1.22227 1.22593 1.20854 0.96743 0.96415 0.93173 1.21881 1.01693 0.93461 1.02620 1.21880 0.96383 1.01484 0.99741 1.21770 0.96666 0.99474 0.99820 1.20722 0.98997 0.89650 0.88214 1.19501 0.92804 0.94144 1.19501 0.87544 0.87059 0.88214 0.83988 0.84681 0.75923 0.94433 0.93868 0.79474 0.94286 0.93336 0.92122 0.90679 0.91217 0.93037 0.92142 0.93894 0.94027 0.91972 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.44 71.23 0.74 0.09 16 2 C 0.16 2.66 7.28 42.33 0.31 2.97 16 3 N -0.41 -6.79 7.17 -46.73 -0.34 -7.12 16 4 H 0.46 3.52 8.96 -213.43 -1.91 1.61 16 5 N -0.34 -9.02 12.69 -48.55 -0.62 -9.63 16 6 C 0.11 3.06 7.49 42.27 0.32 3.38 16 7 C -0.13 -3.59 10.05 22.34 0.22 -3.37 16 8 C -0.05 -1.35 9.39 22.25 0.21 -1.14 16 9 C -0.20 -6.23 5.86 -20.15 -0.12 -6.35 16 10 C 0.56 19.72 6.10 86.69 0.53 20.25 16 11 O -0.57 -22.37 13.38 -4.03 -0.05 -22.42 16 12 N -0.70 -23.61 3.59 -445.71 -1.60 -25.21 16 13 C 0.16 5.46 1.69 44.99 0.08 5.54 16 14 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 15 C 0.14 5.53 5.10 86.38 0.44 5.97 16 16 N -0.74 -37.09 5.43 -343.44 -1.87 -38.96 16 17 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 20 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 21 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 C -0.07 -1.90 0.62 -52.18 -0.03 -1.93 16 26 C -0.14 -3.37 8.12 71.98 0.58 -2.79 16 27 C -0.14 -3.24 7.97 71.98 0.57 -2.67 16 28 C -0.12 -3.32 7.00 71.98 0.50 -2.82 16 29 C 0.05 1.27 9.64 22.85 0.22 1.49 16 30 C -0.25 -6.32 6.25 -20.26 -0.13 -6.44 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.06 8.14 -2.38 -0.02 0.05 16 33 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.14 3.69 6.27 -2.91 -0.02 3.67 16 36 H 0.40 13.11 6.53 -92.71 -0.61 12.51 16 37 H 0.04 1.45 6.71 -2.39 -0.02 1.43 16 38 H 0.04 1.57 6.17 -2.39 -0.01 1.55 16 39 H 0.37 20.45 7.33 -92.72 -0.68 19.77 16 40 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 43 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.23 7.60 -2.39 -0.02 1.22 16 46 H 0.06 1.45 6.32 -2.39 -0.02 1.43 16 47 H 0.04 1.34 7.53 -2.39 -0.02 1.32 16 48 H 0.04 1.25 5.77 -2.39 -0.01 1.24 16 49 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.14 3.67 7.58 -2.91 -0.02 3.65 16 Total: -1.00 -76.15 396.78 1.40 -74.75 By element: Atomic # 1 Polarization: 45.78 SS G_CDS: -2.20 Total: 43.58 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.76 Total: -3.79 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -4.13 Total: -140.33 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.15 1.40 -74.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486404338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.744 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds