Wall clock time and date at job start Wed Apr 1 2020 03:07:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.35821 * 118.70344 * 2 1
4 4 C 1.40838 * 120.56094 * 179.97438 * 3 2 1
5 5 C 1.38425 * 134.90545 * 180.02562 * 4 3 2
6 6 N 1.33889 * 107.85170 * 179.97438 * 5 4 3
7 7 H 0.96999 * 125.02100 * 180.02562 * 6 5 4
8 8 N 1.39979 * 109.95913 * 359.97438 * 6 5 4
9 9 C 1.31481 * 109.01676 * 0.02562 * 8 6 5
10 10 C 1.46672 * 134.99032 * 180.02562 * 9 8 6
11 11 C 1.47159 * 120.72738 * 359.94808 * 10 9 8
12 12 O 1.21644 * 119.99927 * 359.72377 * 11 10 9
13 13 N 1.34773 * 120.00108 * 180.02562 * 11 10 9
14 14 C 1.46504 * 119.99920 * 180.02562 * 13 11 10
15 15 C 1.53004 * 109.47068 * 180.02562 * 14 13 11
16 16 C 1.53000 * 109.47254 * 179.97438 * 15 14 13
17 17 N 1.46490 * 109.47185 * 179.97438 * 16 15 14
18 18 C 1.36937 * 120.00162 * 95.89071 * 17 16 15
19 19 H 1.08007 * 119.99989 * 216.00586 * 18 17 16
20 20 C 1.38810 * 119.99912 * 36.00271 * 18 17 16
21 21 N 1.31624 * 120.00009 * 214.46001 * 20 18 17
22 22 Si 1.86803 * 119.99952 * 34.46177 * 20 18 17
23 23 H 1.48503 * 109.46895 * 95.18811 * 22 20 18
24 24 H 1.48498 * 109.46752 * 215.18542 * 22 20 18
25 25 H 1.48497 * 109.47099 * 335.18728 * 22 20 18
26 26 C 1.46500 * 120.00132 * 275.88858 * 17 16 15
27 27 C 1.53005 * 109.47136 * 120.58391 * 26 17 16
28 28 C 1.52994 * 109.47386 * 240.58420 * 26 17 16
29 29 C 1.38591 * 118.54445 * 180.22227 * 10 9 8
30 30 H 1.08998 * 109.47264 * 90.00008 * 1 2 3
31 31 H 1.08999 * 109.47312 * 210.00258 * 1 2 3
32 32 H 1.08996 * 109.47340 * 330.00315 * 1 2 3
33 33 H 1.07999 * 119.72037 * 0.02562 * 3 2 1
34 34 H 1.08000 * 126.07240 * 359.97438 * 5 4 3
35 35 H 0.97000 * 120.00172 * 0.02562 * 13 11 10
36 36 H 1.09007 * 109.46807 * 299.99892 * 14 13 11
37 37 H 1.09000 * 109.47545 * 59.99900 * 14 13 11
38 38 H 1.08999 * 109.46988 * 299.99909 * 15 14 13
39 39 H 1.09000 * 109.47156 * 59.99495 * 15 14 13
40 40 H 1.09007 * 109.46723 * 299.99788 * 16 15 14
41 41 H 1.09000 * 109.46922 * 59.99749 * 16 15 14
42 42 H 0.96995 * 119.99589 * 180.02562 * 21 20 18
43 43 H 1.09001 * 109.47099 * 0.58241 * 26 17 16
44 44 H 1.08999 * 109.46932 * 66.31635 * 27 26 17
45 45 H 1.09003 * 109.46950 * 186.31960 * 27 26 17
46 46 H 1.09000 * 109.46755 * 306.31476 * 27 26 17
47 47 H 1.08998 * 109.47265 * 62.79200 * 28 26 17
48 48 H 1.09003 * 109.47751 * 182.79746 * 28 26 17
49 49 H 1.09004 * 109.47288 * 302.79290 * 28 26 17
50 50 H 1.08002 * 119.31541 * 179.74959 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1593 1.1913 0.0000
4 6 3.5669 1.2370 0.0005
5 6 4.5118 2.2485 0.0011
6 7 5.7233 1.6786 0.0020
7 1 6.5652 2.1604 0.0029
8 7 5.5955 0.2846 0.0026
9 6 4.3186 -0.0286 0.0016
10 6 3.5585 -1.2830 0.0020
11 6 4.2508 -2.5816 0.0028
12 8 5.4665 -2.6227 -0.0019
13 7 3.5379 -3.7253 0.0026
14 6 4.2271 -5.0181 0.0040
15 6 3.1941 -6.1468 0.0028
16 6 3.9139 -7.4969 0.0036
17 7 2.9248 -8.5776 0.0031
18 6 2.5532 -9.1651 -1.1766
19 1 1.5318 -9.4846 -1.3226
20 6 3.4891 -9.3499 -2.1850
21 7 3.1258 -9.2515 -3.4462
22 14 5.2642 -9.7384 -1.7519
23 1 5.4707 -11.2087 -1.7824
24 1 6.1671 -9.0913 -2.7374
25 1 5.5658 -9.2242 -0.3919
26 6 2.3333 -9.0298 1.2648
27 6 0.8151 -8.8476 1.2105
28 6 2.6621 -10.5082 1.4813
29 6 2.1741 -1.2186 -0.0043
30 1 -0.3634 0.0000 -1.0276
31 1 -0.3634 -0.8899 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.5937 2.1114 0.0004
34 1 4.3080 3.3091 0.0009
35 1 2.5684 -3.6926 0.0016
36 1 4.8524 -5.0974 -0.8854
37 1 4.8505 -5.0966 0.8946
38 1 2.5685 -6.0676 0.8919
39 1 2.5710 -6.0681 -0.8880
40 1 4.5392 -7.5758 -0.8857
41 1 4.5372 -7.5758 0.8943
42 1 3.7797 -9.3810 -4.1508
43 1 2.7405 -8.4427 2.0880
44 1 0.3952 -9.5191 0.4617
45 1 0.3865 -9.0775 2.1860
46 1 0.5822 -7.8163 0.9453
47 1 3.7415 -10.6313 1.5695
48 1 2.1807 -10.8577 2.3947
49 1 2.2983 -11.0892 0.6338
50 1 1.6021 -2.1346 -0.0082
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001493872147.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:07:46
Heat of formation + Delta-G solvation = 73.417666 kcal
Electronic energy + Delta-G solvation = -29474.716928 eV
Core-core repulsion = 25504.083917 eV
Total energy + Delta-G solvation = -3970.633010 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.50343 -39.42056 -37.61218 -36.98893 -34.96225 -32.86929 -32.45887 -31.89381
-31.29521 -30.38788 -29.01769 -26.75826 -26.29464 -25.51136 -24.47631 -23.29291
-21.83034 -21.37730 -21.09659 -19.82335 -19.38150 -18.43282 -17.26329 -16.91191
-16.44069 -15.60919 -15.51337 -15.16333 -15.01931 -14.72702 -14.63562 -14.44952
-13.92296 -13.84341 -13.68349 -13.25026 -13.23457 -13.00803 -12.46386 -12.35084
-12.20715 -12.08161 -11.95162 -11.79848 -11.69460 -11.49436 -11.35557 -11.09522
-10.75346 -10.72354 -10.65070 -10.43604 -10.39295 -10.24101 -9.94149 -9.75170
-9.59062 -9.36587 -9.10754 -8.79319 -8.37384 -7.80932 -6.77561 -6.03314
-3.28522 0.07509 1.49548 1.99022 2.39241 2.97391 3.31114 3.42823
3.55652 3.60345 3.75986 3.94233 4.22114 4.59813 4.60850 4.62987
4.85910 4.91056 4.99781 5.10617 5.19763 5.30983 5.32998 5.41686
5.59257 5.61355 5.71225 5.77501 5.83939 5.89776 5.93624 6.07768
6.11609 6.18333 6.23376 6.30634 6.33493 6.35634 6.47088 6.51677
6.59176 6.66978 6.70291 6.75351 6.75577 6.89807 7.01990 7.14044
7.18417 7.35920 7.72064 8.07632 8.44059 8.44789 9.06803 9.79050
10.22470 11.12489
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014177 B = 0.002366 C = 0.002202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.498230 B =11833.951002 C =12713.467162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.135 4.135
3 C -0.018 4.018
4 C -0.215 4.215
5 C 0.086 3.914
6 N -0.431 5.431
7 H 0.444 0.556
8 N -0.267 5.267
9 C 0.134 3.866
10 C -0.110 4.110
11 C 0.552 3.448
12 O -0.526 6.526
13 N -0.723 5.723
14 C 0.120 3.880
15 C -0.148 4.148
16 C 0.157 3.843
17 N -0.597 5.597
18 C -0.269 4.269
19 H 0.077 0.923
20 C 0.046 3.954
21 N -0.881 5.881
22 Si 0.842 3.158
23 H -0.293 1.293
24 H -0.295 1.295
25 H -0.262 1.262
26 C 0.164 3.836
27 C -0.151 4.151
28 C -0.155 4.155
29 C -0.027 4.027
30 H 0.069 0.931
31 H 0.067 0.933
32 H 0.064 0.936
33 H 0.126 0.874
34 H 0.190 0.810
35 H 0.397 0.603
36 H 0.067 0.933
37 H 0.063 0.937
38 H 0.057 0.943
39 H 0.075 0.925
40 H 0.057 0.943
41 H 0.034 0.966
42 H 0.262 0.738
43 H 0.048 0.952
44 H 0.055 0.945
45 H 0.036 0.964
46 H 0.047 0.953
47 H 0.041 0.959
48 H 0.036 0.964
49 H 0.063 0.937
50 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.255 24.814 9.380 26.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.136 4.136
3 C -0.038 4.038
4 C -0.225 4.225
5 C -0.071 4.071
6 N -0.131 5.131
7 H 0.289 0.711
8 N -0.093 5.093
9 C -0.024 4.024
10 C -0.116 4.116
11 C 0.339 3.661
12 O -0.403 6.403
13 N -0.375 5.375
14 C -0.003 4.003
15 C -0.188 4.188
16 C 0.030 3.970
17 N -0.319 5.319
18 C -0.397 4.397
19 H 0.094 0.906
20 C -0.156 4.156
21 N -0.520 5.520
22 Si 0.669 3.331
23 H -0.220 1.220
24 H -0.222 1.222
25 H -0.186 1.186
26 C 0.058 3.942
27 C -0.210 4.210
28 C -0.214 4.214
29 C -0.050 4.050
30 H 0.088 0.912
31 H 0.086 0.914
32 H 0.083 0.917
33 H 0.144 0.856
34 H 0.206 0.794
35 H 0.232 0.768
36 H 0.085 0.915
37 H 0.081 0.919
38 H 0.076 0.924
39 H 0.094 0.906
40 H 0.075 0.925
41 H 0.053 0.947
42 H 0.072 0.928
43 H 0.066 0.934
44 H 0.074 0.926
45 H 0.055 0.945
46 H 0.066 0.934
47 H 0.060 0.940
48 H 0.055 0.945
49 H 0.082 0.918
50 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -2.078 24.238 9.190 26.005
hybrid contribution 0.299 0.345 -0.023 0.457
sum -1.779 24.583 9.167 26.297
Atomic orbital electron populations
1.20793 0.90593 1.02891 1.02461 1.19075 0.96472 0.92261 1.05814
1.20104 0.90795 0.97686 0.95238 1.19552 0.94800 0.91629 1.16560
1.22732 0.85216 0.99000 1.00150 1.46579 1.08111 1.06305 1.52106
0.71134 1.77888 1.16860 0.87328 1.27210 1.21510 0.90082 0.93002
0.97851 1.19934 0.92003 0.89802 1.09877 1.17934 0.87260 0.83533
0.77332 1.90836 1.13117 1.87405 1.48920 1.46009 1.10175 1.05937
1.75371 1.21472 0.95870 0.80995 1.02002 1.22485 0.98452 0.95338
1.02533 1.21009 0.90996 0.85740 0.99244 1.44199 1.48946 1.35992
1.02741 1.18542 0.94473 1.37176 0.89522 0.90593 1.25429 0.97265
0.98118 0.94768 1.70073 1.35349 1.47305 0.99292 0.87400 0.88002
0.78684 0.79029 1.22022 1.22185 1.18614 1.20392 0.92494 0.93174
0.88168 1.22127 0.97927 1.01441 0.99516 1.22150 1.00292 0.98810
1.00148 1.21198 0.92222 0.98225 0.93371 0.91216 0.91351 0.91660
0.85595 0.79359 0.76784 0.91504 0.91901 0.92384 0.90632 0.92512
0.94725 0.92824 0.93350 0.92561 0.94529 0.93350 0.93957 0.94452
0.91806 0.84805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.66 9.92 36.00 0.36 -0.30 16
2 C -0.13 -1.17 5.82 -105.24 -0.61 -1.78 16
3 C -0.02 -0.15 9.58 -39.46 -0.38 -0.52 16
4 C -0.22 -2.18 6.34 -105.21 -0.67 -2.84 16
5 C 0.09 0.58 12.08 -16.59 -0.20 0.38 16
6 N -0.43 -3.71 7.18 30.86 0.22 -3.49 16
7 H 0.44 2.06 8.96 -182.69 -1.64 0.42 16
8 N -0.27 -3.93 12.24 34.36 0.42 -3.51 16
9 C 0.13 1.91 7.28 -80.98 -0.59 1.32 16
10 C -0.11 -1.55 6.05 -102.74 -0.62 -2.17 16
11 C 0.55 9.28 7.77 -12.64 -0.10 9.18 16
12 O -0.53 -10.97 16.32 5.24 0.09 -10.88 16
13 N -0.72 -10.69 5.51 -61.46 -0.34 -11.03 16
14 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16
15 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16
16 C 0.16 3.29 3.85 -4.05 -0.02 3.28 16
17 N -0.60 -13.45 2.02 -165.67 -0.33 -13.79 16
18 C -0.27 -7.14 8.50 -15.06 -0.13 -7.27 16
19 H 0.08 2.18 7.12 -52.48 -0.37 1.81 16
20 C 0.05 1.29 4.98 -17.43 -0.09 1.20 16
21 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16
22 Si 0.84 21.53 26.29 -169.99 -4.47 17.06 16
23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16
24 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16
25 H -0.26 -6.39 5.95 56.52 0.34 -6.06 16
26 C 0.16 3.15 3.36 -67.93 -0.23 2.92 16
27 C -0.15 -2.65 9.03 37.16 0.34 -2.31 16
28 C -0.16 -2.89 9.21 37.15 0.34 -2.55 16
29 C -0.03 -0.29 9.08 -39.20 -0.36 -0.64 16
30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16
32 H 0.06 0.30 8.04 -51.93 -0.42 -0.12 16
33 H 0.13 0.63 8.04 -52.49 -0.42 0.21 16
34 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16
35 H 0.40 4.69 6.52 -40.82 -0.27 4.42 16
36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
40 H 0.06 1.32 4.58 -51.93 -0.24 1.09 16
41 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16
42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
43 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16
44 H 0.06 1.07 7.25 -51.93 -0.38 0.70 16
45 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
49 H 0.06 1.31 7.58 -51.93 -0.39 0.91 16
50 H 0.13 1.10 6.38 -52.49 -0.33 0.77 16
LS Contribution 405.95 15.07 6.12 6.12
Total: -1.00 -36.79 405.95 -9.77 -46.56
By element:
Atomic # 1 Polarization: 10.45 SS G_CDS: -9.13 Total: 1.32 kcal
Atomic # 6 Polarization: 0.26 SS G_CDS: -3.12 Total: -2.86 kcal
Atomic # 7 Polarization: -58.06 SS G_CDS: 0.74 Total: -57.31 kcal
Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -4.47 Total: 17.06 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -36.79 -9.77 -46.56 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001493872147.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.979 kcal
(2) G-P(sol) polarization free energy of solvation -36.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.190 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds