Wall clock time and date at job start Wed Apr 1 2020 03:07:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.35821 * 118.70344 * 2 1
4 4 C 1.40838 * 120.56094 * 179.97438 * 3 2 1
5 5 C 1.38425 * 134.90545 * 180.02562 * 4 3 2
6 6 N 1.33889 * 107.85170 * 179.97438 * 5 4 3
7 7 H 0.96999 * 125.02100 * 180.02562 * 6 5 4
8 8 N 1.39979 * 109.95913 * 359.97438 * 6 5 4
9 9 C 1.31481 * 109.01676 * 0.02562 * 8 6 5
10 10 C 1.46672 * 134.99032 * 180.02562 * 9 8 6
11 11 C 1.47159 * 120.72738 * 359.94808 * 10 9 8
12 12 O 1.21644 * 119.99927 * 359.72377 * 11 10 9
13 13 N 1.34773 * 120.00108 * 180.02562 * 11 10 9
14 14 C 1.46504 * 119.99920 * 180.02562 * 13 11 10
15 15 C 1.53004 * 109.47068 * 180.02562 * 14 13 11
16 16 C 1.53000 * 109.47254 * 179.97438 * 15 14 13
17 17 N 1.46490 * 109.47185 * 179.97438 * 16 15 14
18 18 C 1.36937 * 120.00162 * 95.89071 * 17 16 15
19 19 H 1.08007 * 119.99989 * 216.00586 * 18 17 16
20 20 C 1.38810 * 119.99912 * 36.00271 * 18 17 16
21 21 N 1.31624 * 120.00009 * 214.46001 * 20 18 17
22 22 Si 1.86803 * 119.99952 * 34.46177 * 20 18 17
23 23 H 1.48503 * 109.46895 * 95.18811 * 22 20 18
24 24 H 1.48498 * 109.46752 * 215.18542 * 22 20 18
25 25 H 1.48497 * 109.47099 * 335.18728 * 22 20 18
26 26 C 1.46500 * 120.00132 * 275.88858 * 17 16 15
27 27 C 1.53005 * 109.47136 * 120.58391 * 26 17 16
28 28 C 1.52994 * 109.47386 * 240.58420 * 26 17 16
29 29 C 1.38591 * 118.54445 * 180.22227 * 10 9 8
30 30 H 1.08998 * 109.47264 * 90.00008 * 1 2 3
31 31 H 1.08999 * 109.47312 * 210.00258 * 1 2 3
32 32 H 1.08996 * 109.47340 * 330.00315 * 1 2 3
33 33 H 1.07999 * 119.72037 * 0.02562 * 3 2 1
34 34 H 1.08000 * 126.07240 * 359.97438 * 5 4 3
35 35 H 0.97000 * 120.00172 * 0.02562 * 13 11 10
36 36 H 1.09007 * 109.46807 * 299.99892 * 14 13 11
37 37 H 1.09000 * 109.47545 * 59.99900 * 14 13 11
38 38 H 1.08999 * 109.46988 * 299.99909 * 15 14 13
39 39 H 1.09000 * 109.47156 * 59.99495 * 15 14 13
40 40 H 1.09007 * 109.46723 * 299.99788 * 16 15 14
41 41 H 1.09000 * 109.46922 * 59.99749 * 16 15 14
42 42 H 0.96995 * 119.99589 * 180.02562 * 21 20 18
43 43 H 1.09001 * 109.47099 * 0.58241 * 26 17 16
44 44 H 1.08999 * 109.46932 * 66.31635 * 27 26 17
45 45 H 1.09003 * 109.46950 * 186.31960 * 27 26 17
46 46 H 1.09000 * 109.46755 * 306.31476 * 27 26 17
47 47 H 1.08998 * 109.47265 * 62.79200 * 28 26 17
48 48 H 1.09003 * 109.47751 * 182.79746 * 28 26 17
49 49 H 1.09004 * 109.47288 * 302.79290 * 28 26 17
50 50 H 1.08002 * 119.31541 * 179.74959 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1593 1.1913 0.0000
4 6 3.5669 1.2370 0.0005
5 6 4.5118 2.2485 0.0011
6 7 5.7233 1.6786 0.0020
7 1 6.5652 2.1604 0.0029
8 7 5.5955 0.2846 0.0026
9 6 4.3186 -0.0286 0.0016
10 6 3.5585 -1.2830 0.0020
11 6 4.2508 -2.5816 0.0028
12 8 5.4665 -2.6227 -0.0019
13 7 3.5379 -3.7253 0.0026
14 6 4.2271 -5.0181 0.0040
15 6 3.1941 -6.1468 0.0028
16 6 3.9139 -7.4969 0.0036
17 7 2.9248 -8.5776 0.0031
18 6 2.5532 -9.1651 -1.1766
19 1 1.5318 -9.4846 -1.3226
20 6 3.4891 -9.3499 -2.1850
21 7 3.1258 -9.2515 -3.4462
22 14 5.2642 -9.7384 -1.7519
23 1 5.4707 -11.2087 -1.7824
24 1 6.1671 -9.0913 -2.7374
25 1 5.5658 -9.2242 -0.3919
26 6 2.3333 -9.0298 1.2648
27 6 0.8151 -8.8476 1.2105
28 6 2.6621 -10.5082 1.4813
29 6 2.1741 -1.2186 -0.0043
30 1 -0.3634 0.0000 -1.0276
31 1 -0.3634 -0.8899 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.5937 2.1114 0.0004
34 1 4.3080 3.3091 0.0009
35 1 2.5684 -3.6926 0.0016
36 1 4.8524 -5.0974 -0.8854
37 1 4.8505 -5.0966 0.8946
38 1 2.5685 -6.0676 0.8919
39 1 2.5710 -6.0681 -0.8880
40 1 4.5392 -7.5758 -0.8857
41 1 4.5372 -7.5758 0.8943
42 1 3.7797 -9.3810 -4.1508
43 1 2.7405 -8.4427 2.0880
44 1 0.3952 -9.5191 0.4617
45 1 0.3865 -9.0775 2.1860
46 1 0.5822 -7.8163 0.9453
47 1 3.7415 -10.6313 1.5695
48 1 2.1807 -10.8577 2.3947
49 1 2.2983 -11.0892 0.6338
50 1 1.6021 -2.1346 -0.0082
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001493872147.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:07:45
Heat of formation + Delta-G solvation = 47.507614 kcal
Electronic energy + Delta-G solvation = -29475.840472 eV
Core-core repulsion = 25504.083917 eV
Total energy + Delta-G solvation = -3971.756555 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-42.23741 -40.61911 -38.72991 -38.32085 -36.36868 -34.31394 -33.81470 -33.25290
-32.13278 -31.36918 -30.48172 -27.75468 -27.37243 -27.04877 -25.59120 -24.82163
-23.01734 -22.52661 -21.97001 -21.14862 -20.84589 -19.13508 -18.39836 -18.15619
-17.71547 -17.05294 -16.90589 -16.56350 -16.32564 -15.90181 -15.65544 -15.37814
-15.24199 -14.94482 -14.84564 -14.72970 -14.20316 -14.10205 -14.02779 -13.95839
-13.37246 -13.33035 -13.04484 -12.90352 -12.81983 -12.69916 -12.59416 -12.49876
-12.33533 -12.18879 -12.05948 -11.97788 -11.63555 -11.56287 -11.37253 -11.22912
-11.19524 -10.84390 -10.49462 -10.16542 -9.82670 -8.68778 -8.54631 -8.21177
-5.40089 -0.65320 0.80339 1.15635 1.34262 1.44411 1.51249 1.81653
2.01162 2.15893 2.48400 2.85538 3.00517 3.25941 3.42656 3.56270
3.81776 4.06543 4.10016 4.18179 4.21913 4.33602 4.40967 4.43524
4.47505 4.56015 4.57482 4.62132 4.73254 4.75984 4.81972 4.90260
4.99466 5.03120 5.04125 5.12515 5.15512 5.19161 5.22992 5.30882
5.34084 5.38780 5.40146 5.48013 5.61286 5.65846 5.68718 5.90641
6.00473 6.27393 6.30033 6.54419 6.63828 7.08980 7.24817 7.76668
8.19728 8.99111
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014177 B = 0.002366 C = 0.002202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.498230 B =11833.951002 C =12713.467162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.162 4.162
3 C 0.012 3.988
4 C -0.247 4.247
5 C 0.134 3.866
6 N -0.424 5.424
7 H 0.459 0.541
8 N -0.346 5.346
9 C 0.107 3.893
10 C -0.170 4.170
11 C 0.550 3.450
12 O -0.582 6.582
13 N -0.713 5.713
14 C 0.130 3.870
15 C -0.125 4.125
16 C 0.149 3.851
17 N -0.607 5.607
18 C -0.238 4.238
19 H 0.048 0.952
20 C -0.006 4.006
21 N -0.929 5.929
22 Si 0.893 3.107
23 H -0.300 1.300
24 H -0.307 1.307
25 H -0.243 1.243
26 C 0.155 3.845
27 C -0.143 4.143
28 C -0.151 4.151
29 C 0.000 4.000
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.084 0.916
33 H 0.170 0.830
34 H 0.253 0.747
35 H 0.412 0.588
36 H 0.040 0.960
37 H 0.064 0.936
38 H 0.083 0.917
39 H 0.055 0.945
40 H 0.028 0.972
41 H 0.054 0.946
42 H 0.258 0.742
43 H 0.076 0.924
44 H 0.031 0.969
45 H 0.071 0.929
46 H 0.047 0.953
47 H 0.034 0.966
48 H 0.073 0.927
49 H 0.035 0.965
50 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.236 28.360 12.006 31.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.163 4.163
3 C -0.008 4.008
4 C -0.257 4.257
5 C -0.025 4.025
6 N -0.124 5.124
7 H 0.306 0.694
8 N -0.173 5.173
9 C -0.050 4.050
10 C -0.176 4.176
11 C 0.340 3.660
12 O -0.463 6.463
13 N -0.366 5.366
14 C 0.006 3.994
15 C -0.165 4.165
16 C 0.023 3.977
17 N -0.329 5.329
18 C -0.368 4.368
19 H 0.066 0.934
20 C -0.203 4.203
21 N -0.573 5.573
22 Si 0.721 3.279
23 H -0.229 1.229
24 H -0.235 1.235
25 H -0.166 1.166
26 C 0.049 3.951
27 C -0.201 4.201
28 C -0.210 4.210
29 C -0.023 4.023
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.103 0.897
33 H 0.187 0.813
34 H 0.269 0.731
35 H 0.250 0.750
36 H 0.059 0.941
37 H 0.083 0.917
38 H 0.102 0.898
39 H 0.074 0.926
40 H 0.046 0.954
41 H 0.072 0.928
42 H 0.068 0.932
43 H 0.094 0.906
44 H 0.050 0.950
45 H 0.090 0.910
46 H 0.066 0.934
47 H 0.053 0.947
48 H 0.091 0.909
49 H 0.055 0.945
50 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -4.073 27.781 11.872 30.484
hybrid contribution 0.799 -0.517 -0.761 1.219
sum -3.274 27.264 11.111 29.622
Atomic orbital electron populations
1.20800 0.88336 1.04034 1.03037 1.19397 0.98027 0.91715 1.07205
1.20641 0.90139 0.99193 0.90784 1.20060 0.96113 0.90774 1.18718
1.23757 0.83336 1.00946 0.94506 1.46613 1.09801 1.04931 1.51087
0.69384 1.77778 1.18034 0.90429 1.31042 1.21860 0.90790 0.94590
0.97764 1.19772 0.93326 0.88482 1.16054 1.18496 0.86816 0.84814
0.75920 1.90781 1.15452 1.88215 1.51850 1.45818 1.10821 1.04922
1.75001 1.21203 0.95496 0.81853 1.00894 1.22166 0.97970 0.93655
1.02730 1.21065 0.90958 0.86886 0.98797 1.44355 1.49160 1.36484
1.02915 1.18414 0.93005 1.34748 0.90616 0.93406 1.25854 1.00135
0.99623 0.94733 1.70156 1.36244 1.50696 1.00159 0.86573 0.84400
0.77607 0.79301 1.22869 1.23495 1.16618 1.20695 0.93411 0.93886
0.87066 1.22022 0.96574 1.00802 1.00751 1.22102 1.00064 0.98045
1.00760 1.21501 0.90899 1.00053 0.89804 0.90857 0.91157 0.89702
0.81267 0.73108 0.75045 0.94116 0.91719 0.89800 0.92587 0.95372
0.92755 0.93249 0.90599 0.95013 0.90998 0.93427 0.94654 0.90856
0.94535 0.83348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.88 9.92 71.23 0.71 -0.18 16
2 C -0.16 -2.37 5.82 -20.26 -0.12 -2.49 16
3 C 0.01 0.15 9.58 22.35 0.21 0.37 16
4 C -0.25 -4.34 6.34 -20.24 -0.13 -4.47 16
5 C 0.13 1.28 12.08 84.42 1.02 2.30 16
6 N -0.42 -6.68 7.18 -56.29 -0.40 -7.09 16
7 H 0.46 3.57 8.96 -213.40 -1.91 1.66 16
8 N -0.35 -10.59 12.24 -45.22 -0.55 -11.14 16
9 C 0.11 3.12 7.28 43.75 0.32 3.44 16
10 C -0.17 -4.96 6.05 -18.65 -0.11 -5.07 16
11 C 0.55 19.64 7.77 86.59 0.67 20.31 16
12 O -0.58 -26.28 16.32 -4.17 -0.07 -26.34 16
13 N -0.71 -21.76 5.51 -466.60 -2.57 -24.33 16
14 C 0.13 4.48 5.67 86.38 0.49 4.97 16
15 C -0.13 -4.33 5.65 30.60 0.17 -4.16 16
16 C 0.15 6.17 3.85 86.38 0.33 6.50 16
17 N -0.61 -26.93 2.02 -678.05 -1.37 -28.29 16
18 C -0.24 -12.88 8.50 84.03 0.71 -12.16 16
19 H 0.05 2.85 7.12 -2.91 -0.02 2.83 16
20 C -0.01 -0.34 4.98 84.86 0.42 0.08 16
21 N -0.93 -57.86 13.97 21.65 0.30 -57.55 16
22 Si 0.89 45.98 26.29 68.60 1.80 47.78 16
23 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16
24 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16
25 H -0.24 -11.56 5.95 99.48 0.59 -10.97 16
26 C 0.15 5.56 3.36 44.99 0.15 5.71 16
27 C -0.14 -4.66 9.03 71.98 0.65 -4.01 16
28 C -0.15 -5.31 9.21 71.98 0.66 -4.65 16
29 C 0.00 -0.01 9.08 22.52 0.20 0.20 16
30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.07 0.56 8.06 -2.39 -0.02 0.54 16
32 H 0.08 0.39 8.04 -2.39 -0.02 0.37 16
33 H 0.17 0.60 8.04 -2.91 -0.02 0.57 16
34 H 0.25 -1.01 8.06 -2.91 -0.02 -1.03 16
35 H 0.41 9.70 6.52 -92.71 -0.60 9.09 16
36 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16
37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16
39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
40 H 0.03 1.32 4.58 -2.38 -0.01 1.31 16
41 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16
42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
43 H 0.08 2.36 7.88 -2.39 -0.02 2.35 16
44 H 0.03 1.17 7.25 -2.39 -0.02 1.15 16
45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
49 H 0.04 1.46 7.58 -2.38 -0.02 1.44 16
50 H 0.15 2.29 6.38 -2.91 -0.02 2.27 16
Total: -1.00 -88.78 405.95 1.85 -86.93
By element:
Atomic # 1 Polarization: 15.02 SS G_CDS: -1.67 Total: 13.36 kcal
Atomic # 6 Polarization: 0.31 SS G_CDS: 6.37 Total: 6.68 kcal
Atomic # 7 Polarization: -123.81 SS G_CDS: -4.59 Total: -128.41 kcal
Atomic # 8 Polarization: -26.28 SS G_CDS: -0.07 Total: -26.34 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 1.80 Total: 47.78 kcal
Total: -88.78 1.85 -86.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001493872147.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.434 kcal
(2) G-P(sol) polarization free energy of solvation -88.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.926 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds