Wall clock time and date at job start Wed Apr 1 2020 03:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40154 * 120.29862 * 2 1 4 4 C 1.35186 * 120.31941 * 179.97438 * 3 2 1 5 5 N 1.36239 * 120.70807 * 0.04337 * 4 3 2 6 6 N 1.40013 * 132.01314 * 180.02562 * 5 4 3 7 7 C 1.30751 * 109.60375 * 179.68918 * 6 5 4 8 8 C 1.40550 * 108.74079 * 0.41812 * 7 6 5 9 9 C 1.46572 * 126.57688 * 179.85392 * 8 7 6 10 10 O 1.21723 * 119.99842 * 179.68209 * 9 8 7 11 11 N 1.34772 * 119.99992 * 359.68820 * 9 8 7 12 12 C 1.46501 * 119.99913 * 184.91068 * 11 9 8 13 13 H 1.08998 * 109.47261 * 321.59381 * 12 11 9 14 14 C 1.53004 * 109.47121 * 201.58942 * 12 11 9 15 15 N 1.46498 * 109.46953 * 55.00357 * 14 12 11 16 16 C 1.36933 * 120.00093 * 180.02562 * 15 14 12 17 17 H 1.08008 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00221 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99722 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99926 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46777 * 89.99959 * 20 18 16 22 22 H 1.48498 * 109.47117 * 209.99911 * 20 18 16 23 23 H 1.48498 * 109.47259 * 330.00350 * 20 18 16 24 24 C 1.53005 * 109.46840 * 81.59115 * 12 11 9 25 25 C 1.52997 * 109.46868 * 185.96648 * 24 12 11 26 26 C 1.52996 * 109.47178 * 185.26902 * 25 24 12 27 27 C 1.53005 * 109.47170 * 65.27047 * 25 24 12 28 28 C 1.36575 * 120.08093 * 359.95555 * 5 4 3 29 29 C 1.36457 * 120.29273 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.47310 * 269.98242 * 1 2 3 31 31 H 1.09006 * 109.46743 * 29.98272 * 1 2 3 32 32 H 1.08997 * 109.47224 * 149.97677 * 1 2 3 33 33 H 1.08002 * 119.84042 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.64768 * 179.97438 * 4 3 2 35 35 H 1.07997 * 125.62636 * 180.24489 * 7 6 5 36 36 H 0.97002 * 119.99879 * 4.91216 * 11 9 8 37 37 H 1.08996 * 109.46656 * 175.00216 * 14 12 11 38 38 H 1.08998 * 109.47171 * 295.00117 * 14 12 11 39 39 H 0.96999 * 120.00359 * 359.97438 * 15 14 12 40 40 H 0.97004 * 119.99494 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47121 * 65.96738 * 24 12 11 42 42 H 1.08997 * 109.46748 * 305.96600 * 24 12 11 43 43 H 1.09001 * 109.47413 * 305.27186 * 25 24 12 44 44 H 1.09001 * 109.47180 * 300.00427 * 26 25 24 45 45 H 1.09001 * 109.47045 * 60.00577 * 26 25 24 46 46 H 1.09002 * 109.47583 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.46573 * 54.58439 * 27 25 24 48 48 H 1.08999 * 109.47197 * 174.58380 * 27 25 24 49 49 H 1.08994 * 109.47194 * 294.58425 * 27 25 24 50 50 H 1.07997 * 120.36998 * 359.95571 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5660 1.2106 0.0005 5 7 4.2621 0.0395 0.0002 6 7 5.6352 -0.2345 0.0010 7 6 5.8244 -1.5282 0.0069 8 6 4.5727 -2.1677 0.0004 9 6 4.3304 -3.6132 0.0008 10 8 3.1902 -4.0391 0.0006 11 7 5.3701 -4.4707 0.0015 12 6 5.1309 -5.9120 -0.1067 13 1 4.2433 -6.1772 0.4677 14 6 6.3398 -6.6723 0.4425 15 7 6.6163 -6.2272 1.8106 16 6 7.6605 -6.7712 2.5097 17 1 8.2800 -7.5287 2.0527 18 6 7.9228 -6.3490 3.8059 19 7 7.1674 -5.4263 4.3629 20 14 9.3468 -7.0917 4.7599 21 1 10.5753 -6.2937 4.5164 22 1 9.0295 -7.0818 6.2105 23 1 9.5678 -8.4898 4.3109 24 6 4.9182 -6.2848 -1.5753 25 6 4.5220 -7.7592 -1.6750 26 6 4.4373 -8.1662 -3.1474 27 6 3.1603 -7.9676 -1.0091 28 6 3.5960 -1.1528 0.0002 29 6 2.1953 -1.1782 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6764 2.1467 0.0004 34 1 4.0999 2.1494 0.0001 35 1 6.7840 -2.0236 0.0126 36 1 6.2768 -4.1336 0.0737 37 1 6.1265 -7.7412 0.4442 38 1 7.2085 -6.4762 -0.1860 39 1 6.0601 -5.5466 2.2209 40 1 7.3510 -5.1311 5.2686 41 1 5.8417 -6.1184 -2.1299 42 1 4.1253 -5.6663 -1.9959 43 1 5.2702 -8.3713 -1.1713 44 1 3.6892 -7.5540 -3.6511 45 1 5.4074 -8.0178 -3.6217 46 1 4.1555 -9.2167 -3.2184 47 1 2.4327 -7.2853 -1.4489 48 1 2.8338 -8.9960 -1.1637 49 1 3.2443 -7.7698 0.0594 50 1 1.6662 -2.1197 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496273395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:19 Heat of formation + Delta-G solvation = 58.072925 kcal Electronic energy + Delta-G solvation = -30223.766638 eV Core-core repulsion = 26252.468229 eV Total energy + Delta-G solvation = -3971.298408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.20487 -39.29560 -37.76315 -36.95815 -34.75617 -33.70530 -33.36779 -31.44592 -31.11926 -29.77023 -28.74455 -27.18797 -26.95410 -25.49213 -24.01171 -23.06946 -22.40159 -22.06245 -21.03020 -19.86637 -19.31423 -17.97361 -17.08924 -16.84284 -16.29771 -15.88081 -15.70887 -15.29854 -15.15702 -14.73975 -14.41773 -14.31438 -13.80289 -13.70047 -13.55584 -13.43582 -13.30053 -13.14075 -12.85751 -12.71811 -12.22133 -12.13744 -12.10947 -12.00541 -11.82595 -11.65308 -11.53277 -11.03658 -10.91676 -10.84287 -10.73003 -10.69307 -10.41119 -10.36762 -10.19426 -9.94096 -9.69785 -9.46124 -9.44205 -8.87284 -8.51494 -7.67495 -6.91511 -5.74318 -3.03944 0.50283 0.87581 2.05643 2.24497 3.05603 3.44350 3.49743 3.51590 3.64825 3.84736 4.11888 4.31724 4.41606 4.60218 4.64995 4.90459 5.01666 5.08752 5.09876 5.16266 5.20315 5.24173 5.28991 5.43460 5.47393 5.56679 5.60730 5.64012 5.66258 5.79751 5.83279 5.87204 5.91918 6.00190 6.07700 6.11309 6.19590 6.24314 6.25655 6.28688 6.37058 6.42573 6.53170 6.58702 6.67303 6.68906 6.82199 7.10084 7.38599 7.71204 8.06686 8.43357 8.75001 9.55205 10.12177 10.47572 11.47777 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.003413 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.475791 B = 8203.034858 C =10593.626007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.160 4.160 4 C 0.112 3.888 5 N -0.271 5.271 6 N -0.322 5.322 7 C 0.124 3.876 8 C -0.304 4.304 9 C 0.600 3.400 10 O -0.559 6.559 11 N -0.709 5.709 12 C 0.139 3.861 13 H 0.090 0.910 14 C 0.145 3.855 15 N -0.731 5.731 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.119 4.119 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.147 4.147 28 C 0.164 3.836 29 C -0.106 4.106 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.200 0.800 36 H 0.401 0.599 37 H 0.035 0.965 38 H 0.023 0.977 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 11.000 -14.437 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.182 4.182 4 C -0.014 4.014 5 N -0.035 5.035 6 N -0.142 5.142 7 C -0.056 4.056 8 C -0.318 4.318 9 C 0.389 3.611 10 O -0.439 6.439 11 N -0.359 5.359 12 C 0.035 3.965 13 H 0.107 0.893 14 C 0.017 3.983 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.158 4.158 25 C -0.115 4.115 26 C -0.201 4.201 27 C -0.204 4.204 28 C 0.043 3.957 29 C -0.126 4.126 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.217 0.783 36 H 0.236 0.764 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.787 11.688 -14.398 21.974 hybrid contribution 0.921 -0.662 0.904 1.451 sum -10.865 11.026 -13.494 20.536 Atomic orbital electron populations 1.20823 0.89567 1.03527 1.03187 1.20032 0.97304 0.92171 0.96003 1.20787 0.91838 0.99558 1.05998 1.21511 0.92018 0.88396 0.99481 1.46073 1.06478 1.05259 1.45708 1.77588 0.87885 1.17137 1.31636 1.24149 0.98992 0.90326 0.92111 1.19807 0.91276 0.93790 1.26972 1.16781 0.84851 0.84011 0.75495 1.90719 1.21876 1.79092 1.52234 1.45698 1.09242 1.06635 1.74305 1.21286 1.00404 0.79228 0.95603 0.89255 1.21007 0.93220 0.96315 0.87792 1.42371 1.36506 1.48349 1.10390 1.19206 1.05646 1.17008 0.95399 0.91199 1.24741 0.99367 0.99366 0.97319 1.69676 1.40431 1.32855 1.14823 0.86214 0.82108 0.78580 0.79412 1.21766 1.21841 1.20790 1.21977 1.01387 0.95909 0.96511 1.21124 0.98194 0.96252 0.95972 1.21823 1.01369 1.00748 0.96191 1.21861 0.96509 1.00705 1.01323 1.19280 0.92961 0.85693 0.97741 1.20754 0.90028 1.00178 1.01597 0.90213 0.90927 0.90623 0.82694 0.81209 0.78344 0.76401 0.94728 0.95955 0.77935 0.93547 0.92008 0.91708 0.90494 0.93057 0.92931 0.92975 0.92816 0.93278 0.92072 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.03 36.01 0.36 -0.36 16 2 C -0.05 -0.47 5.89 -104.55 -0.62 -1.08 16 3 C -0.16 -1.25 9.67 -39.95 -0.39 -1.63 16 4 C 0.11 1.08 11.17 -16.68 -0.19 0.90 16 5 N -0.27 -3.74 3.86 -10.55 -0.04 -3.78 16 6 N -0.32 -4.87 12.57 30.75 0.39 -4.48 16 7 C 0.12 1.85 11.44 -17.14 -0.20 1.65 16 8 C -0.30 -4.98 6.17 -104.68 -0.65 -5.62 16 9 C 0.60 10.76 7.65 -12.90 -0.10 10.66 16 10 O -0.56 -11.14 15.40 5.17 0.08 -11.06 16 11 N -0.71 -12.05 4.54 -55.14 -0.25 -12.30 16 12 C 0.14 2.40 2.08 -67.92 -0.14 2.25 16 13 H 0.09 1.74 5.91 -51.93 -0.31 1.43 16 14 C 0.14 2.83 5.46 -4.04 -0.02 2.80 16 15 N -0.73 -18.17 5.43 -59.91 -0.33 -18.50 16 16 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.12 -1.70 4.39 -26.73 -0.12 -1.82 16 25 C -0.10 -1.26 2.80 -90.62 -0.25 -1.51 16 26 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 27 C -0.15 -1.96 8.83 37.16 0.33 -1.63 16 28 C 0.16 2.48 6.76 -84.07 -0.57 1.91 16 29 C -0.11 -1.37 9.38 -39.53 -0.37 -1.74 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.20 2.42 7.47 -52.49 -0.39 2.03 16 36 H 0.40 6.48 7.51 -40.82 -0.31 6.18 16 37 H 0.04 0.68 6.72 -51.93 -0.35 0.33 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.39 10.36 7.33 -40.82 -0.30 10.06 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 43 H 0.08 1.05 6.48 -51.93 -0.34 0.72 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 50 H 0.16 2.17 7.12 -52.49 -0.37 1.80 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -34.52 409.05 -8.85 -43.37 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.75 Total: 14.38 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.82 Total: -3.70 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.49 Total: -66.52 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.52 -8.85 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496273395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.447 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds