Wall clock time and date at job start Wed Apr 1 2020 03:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40154 * 120.29862 * 2 1 4 4 C 1.35186 * 120.31941 * 179.97438 * 3 2 1 5 5 N 1.36239 * 120.70807 * 0.04337 * 4 3 2 6 6 N 1.40013 * 132.01314 * 180.02562 * 5 4 3 7 7 C 1.30751 * 109.60375 * 179.68918 * 6 5 4 8 8 C 1.40550 * 108.74079 * 0.41812 * 7 6 5 9 9 C 1.46572 * 126.57688 * 179.85392 * 8 7 6 10 10 O 1.21723 * 119.99842 * 179.68209 * 9 8 7 11 11 N 1.34772 * 119.99992 * 359.68820 * 9 8 7 12 12 C 1.46501 * 119.99913 * 184.91068 * 11 9 8 13 13 H 1.08998 * 109.47261 * 321.59381 * 12 11 9 14 14 C 1.53004 * 109.47121 * 201.58942 * 12 11 9 15 15 N 1.46498 * 109.46953 * 55.00357 * 14 12 11 16 16 C 1.36933 * 120.00093 * 180.02562 * 15 14 12 17 17 H 1.08008 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00221 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99722 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99926 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46777 * 89.99959 * 20 18 16 22 22 H 1.48498 * 109.47117 * 209.99911 * 20 18 16 23 23 H 1.48498 * 109.47259 * 330.00350 * 20 18 16 24 24 C 1.53005 * 109.46840 * 81.59115 * 12 11 9 25 25 C 1.52997 * 109.46868 * 185.96648 * 24 12 11 26 26 C 1.52996 * 109.47178 * 185.26902 * 25 24 12 27 27 C 1.53005 * 109.47170 * 65.27047 * 25 24 12 28 28 C 1.36575 * 120.08093 * 359.95555 * 5 4 3 29 29 C 1.36457 * 120.29273 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.47310 * 269.98242 * 1 2 3 31 31 H 1.09006 * 109.46743 * 29.98272 * 1 2 3 32 32 H 1.08997 * 109.47224 * 149.97677 * 1 2 3 33 33 H 1.08002 * 119.84042 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.64768 * 179.97438 * 4 3 2 35 35 H 1.07997 * 125.62636 * 180.24489 * 7 6 5 36 36 H 0.97002 * 119.99879 * 4.91216 * 11 9 8 37 37 H 1.08996 * 109.46656 * 175.00216 * 14 12 11 38 38 H 1.08998 * 109.47171 * 295.00117 * 14 12 11 39 39 H 0.96999 * 120.00359 * 359.97438 * 15 14 12 40 40 H 0.97004 * 119.99494 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47121 * 65.96738 * 24 12 11 42 42 H 1.08997 * 109.46748 * 305.96600 * 24 12 11 43 43 H 1.09001 * 109.47413 * 305.27186 * 25 24 12 44 44 H 1.09001 * 109.47180 * 300.00427 * 26 25 24 45 45 H 1.09001 * 109.47045 * 60.00577 * 26 25 24 46 46 H 1.09002 * 109.47583 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.46573 * 54.58439 * 27 25 24 48 48 H 1.08999 * 109.47197 * 174.58380 * 27 25 24 49 49 H 1.08994 * 109.47194 * 294.58425 * 27 25 24 50 50 H 1.07997 * 120.36998 * 359.95571 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5660 1.2106 0.0005 5 7 4.2621 0.0395 0.0002 6 7 5.6352 -0.2345 0.0010 7 6 5.8244 -1.5282 0.0069 8 6 4.5727 -2.1677 0.0004 9 6 4.3304 -3.6132 0.0008 10 8 3.1902 -4.0391 0.0006 11 7 5.3701 -4.4707 0.0015 12 6 5.1309 -5.9120 -0.1067 13 1 4.2433 -6.1772 0.4677 14 6 6.3398 -6.6723 0.4425 15 7 6.6163 -6.2272 1.8106 16 6 7.6605 -6.7712 2.5097 17 1 8.2800 -7.5287 2.0527 18 6 7.9228 -6.3490 3.8059 19 7 7.1674 -5.4263 4.3629 20 14 9.3468 -7.0917 4.7599 21 1 10.5753 -6.2937 4.5164 22 1 9.0295 -7.0818 6.2105 23 1 9.5678 -8.4898 4.3109 24 6 4.9182 -6.2848 -1.5753 25 6 4.5220 -7.7592 -1.6750 26 6 4.4373 -8.1662 -3.1474 27 6 3.1603 -7.9676 -1.0091 28 6 3.5960 -1.1528 0.0002 29 6 2.1953 -1.1782 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6764 2.1467 0.0004 34 1 4.0999 2.1494 0.0001 35 1 6.7840 -2.0236 0.0126 36 1 6.2768 -4.1336 0.0737 37 1 6.1265 -7.7412 0.4442 38 1 7.2085 -6.4762 -0.1860 39 1 6.0601 -5.5466 2.2209 40 1 7.3510 -5.1311 5.2686 41 1 5.8417 -6.1184 -2.1299 42 1 4.1253 -5.6663 -1.9959 43 1 5.2702 -8.3713 -1.1713 44 1 3.6892 -7.5540 -3.6511 45 1 5.4074 -8.0178 -3.6217 46 1 4.1555 -9.2167 -3.2184 47 1 2.4327 -7.2853 -1.4489 48 1 2.8338 -8.9960 -1.1637 49 1 3.2443 -7.7698 0.0594 50 1 1.6662 -2.1197 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496273395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:18 Heat of formation + Delta-G solvation = 36.107426 kcal Electronic energy + Delta-G solvation = -30224.719133 eV Core-core repulsion = 26252.468229 eV Total energy + Delta-G solvation = -3972.250904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21021 -40.65616 -38.69992 -38.26835 -36.33346 -35.04548 -34.57892 -32.94864 -32.39884 -31.04413 -29.87611 -28.07956 -27.98630 -27.20135 -25.05722 -24.51560 -23.86255 -23.03643 -22.26878 -21.13175 -20.56018 -19.30533 -18.86450 -17.79877 -17.45575 -17.03241 -16.91871 -16.73922 -16.13872 -16.03610 -15.69971 -15.60073 -15.19606 -15.02122 -14.95161 -14.47491 -14.40767 -14.32677 -14.19646 -13.73154 -13.51155 -13.36324 -13.15387 -12.95623 -12.92335 -12.76503 -12.71478 -12.60848 -12.48002 -12.19960 -12.01431 -11.96332 -11.86897 -11.74397 -11.52426 -11.40071 -11.32604 -10.98315 -10.77921 -10.35384 -9.91780 -8.98870 -8.71213 -7.92273 -5.21968 -0.40205 -0.03421 1.06454 1.12919 1.48261 1.49812 1.58231 2.14143 2.34789 2.57118 2.59068 3.15782 3.41909 3.45685 3.66838 3.77739 3.82462 3.89131 4.04720 4.07739 4.08899 4.20099 4.22915 4.34748 4.43744 4.47131 4.56683 4.62215 4.77590 4.78031 4.83004 4.84019 4.91002 4.93103 4.97714 5.03801 5.07225 5.11434 5.15080 5.20900 5.26065 5.34058 5.37076 5.46589 5.51181 5.51499 5.55470 5.69490 5.76178 6.27590 6.33216 6.70480 7.34950 7.38173 8.09090 8.33144 9.30712 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.003413 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.475791 B = 8203.034858 C =10593.626007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 C -0.142 4.142 4 C 0.100 3.900 5 N -0.274 5.274 6 N -0.343 5.343 7 C 0.126 3.874 8 C -0.349 4.349 9 C 0.598 3.402 10 O -0.591 6.591 11 N -0.708 5.708 12 C 0.149 3.851 13 H 0.062 0.938 14 C 0.148 3.852 15 N -0.743 5.743 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.269 1.269 24 C -0.106 4.106 25 C -0.095 4.095 26 C -0.138 4.138 27 C -0.144 4.144 28 C 0.153 3.847 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.208 0.792 34 H 0.205 0.795 35 H 0.214 0.786 36 H 0.404 0.596 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.035 0.965 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.397 12.509 -15.830 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.027 4.027 3 C -0.163 4.163 4 C -0.026 4.026 5 N -0.038 5.038 6 N -0.164 5.164 7 C -0.055 4.055 8 C -0.363 4.363 9 C 0.388 3.612 10 O -0.474 6.474 11 N -0.357 5.357 12 C 0.044 3.956 13 H 0.080 0.920 14 C 0.022 3.978 15 N -0.386 5.386 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.145 4.145 25 C -0.114 4.114 26 C -0.196 4.196 27 C -0.201 4.201 28 C 0.032 3.968 29 C -0.169 4.169 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.225 0.775 34 H 0.222 0.778 35 H 0.230 0.770 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.293 13.176 -15.842 23.994 hybrid contribution 0.875 -0.966 1.290 1.834 sum -11.418 12.210 -14.552 22.163 Atomic orbital electron populations 1.20979 0.86957 1.05039 1.04282 1.20559 0.99121 0.91491 0.91553 1.21439 0.91138 1.00751 1.02968 1.22455 0.93125 0.88319 0.98660 1.46321 1.06043 1.06031 1.45432 1.77475 0.89010 1.16993 1.32902 1.24351 0.99187 0.90417 0.91500 1.19741 0.92625 0.93123 1.30849 1.17060 0.84421 0.84907 0.74806 1.90677 1.22916 1.79760 1.53998 1.45661 1.09309 1.06469 1.74278 1.21126 0.98094 0.79281 0.97084 0.92032 1.21126 0.94534 0.96657 0.85512 1.42548 1.35800 1.48009 1.12194 1.19635 1.05702 1.16344 0.95597 0.90233 1.25553 1.02200 1.00333 0.98568 1.69854 1.42514 1.34797 1.14798 0.85151 0.79008 0.78364 0.77283 1.21293 1.22698 1.19342 1.21874 1.01741 0.96783 0.94132 1.21131 0.97601 0.95016 0.97697 1.21771 1.02077 1.01541 0.94177 1.21828 0.96908 1.01686 0.99686 1.19514 0.93794 0.86088 0.97386 1.20749 0.89407 1.01153 1.05561 0.89042 0.87648 0.90958 0.77503 0.77814 0.76984 0.76042 0.94202 0.94461 0.79500 0.94266 0.90569 0.92622 0.90868 0.92821 0.92005 0.91678 0.93243 0.91460 0.94551 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.03 71.24 0.71 -0.39 16 2 C -0.02 -0.36 5.89 -19.81 -0.12 -0.47 16 3 C -0.14 -1.65 9.67 22.03 0.21 -1.44 16 4 C 0.10 1.67 11.17 83.30 0.93 2.60 16 5 N -0.27 -7.53 3.86 -187.28 -0.72 -8.25 16 6 N -0.34 -10.60 12.57 -56.62 -0.71 -11.31 16 7 C 0.13 3.95 11.44 85.42 0.98 4.93 16 8 C -0.35 -12.28 6.17 -19.90 -0.12 -12.40 16 9 C 0.60 23.20 7.65 86.42 0.66 23.86 16 10 O -0.59 -25.61 15.40 -4.42 -0.07 -25.68 16 11 N -0.71 -25.63 4.54 -446.57 -2.03 -27.65 16 12 C 0.15 5.36 2.08 44.99 0.09 5.45 16 13 H 0.06 2.58 5.91 -2.39 -0.01 2.57 16 14 C 0.15 5.88 5.46 86.38 0.47 6.35 16 15 N -0.74 -37.87 5.43 -343.45 -1.87 -39.74 16 16 C -0.24 -13.39 9.99 84.04 0.84 -12.55 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 20 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.11 -3.09 4.39 30.60 0.13 -2.95 16 25 C -0.10 -2.45 2.80 -10.79 -0.03 -2.48 16 26 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 27 C -0.14 -3.92 8.83 71.98 0.64 -3.29 16 28 C 0.15 4.86 6.76 39.49 0.27 5.12 16 29 C -0.15 -3.97 9.38 22.30 0.21 -3.76 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.38 8.10 -2.38 -0.02 0.36 16 32 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.21 5.57 7.47 -2.91 -0.02 5.55 16 36 H 0.40 13.87 7.51 -92.71 -0.70 13.18 16 37 H 0.04 1.57 6.72 -2.39 -0.02 1.55 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.37 20.93 7.33 -92.71 -0.68 20.25 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.07 1.95 6.48 -2.39 -0.02 1.93 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.15 6.71 -2.39 -0.02 1.14 16 50 H 0.14 4.21 7.12 -2.91 -0.02 4.19 16 Total: -1.00 -78.98 409.05 3.51 -75.47 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -0.41 Total: 46.23 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 7.01 Total: 2.61 kcal Atomic # 7 Polarization: -142.12 SS G_CDS: -5.04 Total: -147.17 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.98 3.51 -75.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496273395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.575 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds