Wall clock time and date at job start Wed Apr 1 2020 03:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 110.28678 * 2 1 4 4 N 1.46494 * 109.47445 * 302.13453 * 3 2 1 5 5 C 1.36938 * 120.00002 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99666 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99725 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00537 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47233 * 89.99731 * 9 7 5 11 11 H 1.48506 * 109.47143 * 210.00081 * 9 7 5 12 12 H 1.48504 * 109.46804 * 329.99730 * 9 7 5 13 13 C 1.54614 * 110.41366 * 237.80917 * 2 1 3 14 14 C 1.54590 * 102.91382 * 262.76186 * 13 2 1 15 15 N 1.48114 * 103.42111 * 322.86768 * 14 13 2 16 16 C 1.34779 * 127.03473 * 219.28445 * 15 14 13 17 17 O 1.21286 * 119.99967 * 4.70415 * 16 15 14 18 18 C 1.50704 * 120.00306 * 184.70286 * 16 15 14 19 19 H 1.09003 * 109.62965 * 333.11691 * 18 16 15 20 20 C 1.53302 * 109.63664 * 212.71170 * 18 16 15 21 21 C 1.52818 * 108.67733 * 170.21577 * 20 18 16 22 22 C 1.50882 * 110.20678 * 50.98292 * 21 20 18 23 23 N 1.32897 * 118.45042 * 162.65263 * 22 21 20 24 24 C 1.31599 * 121.06371 * 179.50805 * 23 22 21 25 25 N 1.31813 * 121.67019 * 0.02562 * 24 23 22 26 26 C 1.32191 * 120.64340 * 0.12684 * 25 24 23 27 27 C 1.37770 * 122.66572 * 342.37893 * 22 21 20 28 28 C 1.50344 * 122.79142 * 0.61190 * 27 22 21 29 29 C 1.47488 * 105.93425 * 39.02341 * 15 14 13 30 30 H 1.08996 * 109.47015 * 297.86448 * 1 2 3 31 31 H 1.09001 * 109.47115 * 57.86524 * 1 2 3 32 32 H 1.08998 * 109.46824 * 177.86412 * 1 2 3 33 33 H 1.08997 * 109.46607 * 62.13961 * 3 2 1 34 34 H 1.09000 * 109.46757 * 182.13093 * 3 2 1 35 35 H 0.97008 * 119.99924 * 0.02562 * 4 3 2 36 36 H 0.97006 * 120.00277 * 180.02562 * 8 7 5 37 37 H 1.09007 * 110.73990 * 21.25261 * 13 2 1 38 38 H 1.09001 * 110.74116 * 144.39031 * 13 2 1 39 39 H 1.08999 * 110.62244 * 204.35488 * 14 13 2 40 40 H 1.09004 * 110.55020 * 81.34622 * 14 13 2 41 41 H 1.09005 * 109.62978 * 290.02306 * 20 18 16 42 42 H 1.08998 * 109.63352 * 50.41363 * 20 18 16 43 43 H 1.08997 * 109.30433 * 171.45145 * 21 20 18 44 44 H 1.08992 * 109.30615 * 290.85526 * 21 20 18 45 45 H 1.07998 * 119.16661 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.36889 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.30179 * 222.11655 * 28 27 22 48 48 H 1.08999 * 109.14410 * 102.62193 * 28 27 22 49 49 H 1.09004 * 109.91210 * 94.13915 * 29 15 14 50 50 H 1.09002 * 109.91458 * 215.22487 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 7 1.5408 2.1479 -1.1695 5 6 1.8824 3.4571 -1.3811 6 1 2.5353 3.9639 -0.6860 7 6 1.3895 4.1326 -2.4890 8 7 1.7182 5.3907 -2.6926 9 14 0.2596 3.2562 -3.6910 10 1 -1.1514 3.4349 -3.2643 11 1 0.4424 3.8283 -5.0492 12 1 0.5899 1.8085 -3.7152 13 6 2.0694 -0.7720 -1.2263 14 6 2.3678 -2.1742 -0.6479 15 7 2.8825 -1.8835 0.7101 16 6 3.8948 -2.5069 1.3452 17 8 4.5434 -3.3534 0.7675 18 6 4.2207 -2.1521 2.7732 19 1 3.9145 -1.1255 2.9745 20 6 5.7288 -2.2954 3.0082 21 6 6.0697 -1.7022 4.3747 22 6 5.1613 -2.2767 5.4336 23 7 5.5199 -2.1580 6.7077 24 6 4.7617 -2.6317 7.6734 25 7 3.6205 -3.2413 7.4216 26 6 3.2008 -3.3987 6.1779 27 6 3.9766 -2.9120 5.1320 28 6 3.4901 -3.1013 3.7222 29 6 2.0651 -0.7681 1.2228 30 1 -0.3633 0.4803 0.9085 31 1 -0.3633 0.5466 -0.8702 32 1 -0.3633 -1.0269 -0.0383 33 1 1.7360 1.9423 0.9085 34 1 3.1498 1.4198 -0.0382 35 1 0.9541 1.6928 -1.7937 36 1 1.3735 5.8629 -3.4667 37 1 1.3136 -0.8285 -2.0098 38 1 2.9807 -0.3084 -1.6040 39 1 3.1245 -2.6828 -1.2453 40 1 1.4553 -2.7681 -0.5944 41 1 6.0040 -3.3500 2.9879 42 1 6.2732 -1.7599 2.2305 43 1 7.1066 -1.9326 4.6190 44 1 5.9426 -0.6202 4.3396 45 1 5.0826 -2.5180 8.6984 46 1 2.2653 -3.8993 5.9766 47 1 2.4197 -2.8997 3.6803 48 1 3.6751 -4.1307 3.4154 49 1 1.2331 -1.1569 1.8101 50 1 2.6787 -0.1105 1.8387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569671580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:58 Heat of formation + Delta-G solvation = -2.978379 kcal Electronic energy + Delta-G solvation = -30411.921574 eV Core-core repulsion = 26437.975782 eV Total energy + Delta-G solvation = -3973.945792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.39831 -41.34946 -39.62176 -37.62727 -36.54919 -35.06620 -34.30053 -32.71885 -32.43355 -31.59933 -30.44557 -27.88850 -27.27038 -26.36470 -25.40152 -24.19078 -23.98899 -23.74462 -21.64652 -20.36631 -20.06417 -19.45687 -18.72140 -18.22302 -17.79796 -17.12889 -16.62791 -16.45460 -16.08067 -15.96741 -15.57025 -15.21564 -15.09055 -15.04461 -14.87289 -14.82615 -14.51892 -14.30611 -14.22313 -13.98279 -13.62766 -13.42091 -13.29457 -13.13099 -13.02144 -12.86895 -12.81546 -12.60291 -12.24000 -12.11589 -12.00709 -11.95448 -11.87035 -11.68091 -11.54031 -11.40730 -11.35662 -10.96592 -10.77160 -10.21165 -10.18145 -9.71335 -9.26992 -8.01609 -5.34323 -0.09140 0.05377 1.37049 1.41510 1.48714 1.53456 1.91584 2.49142 2.74665 3.01446 3.22344 3.29428 3.32838 3.39968 3.46223 3.60244 3.60921 3.77127 3.81271 3.93191 3.98988 4.16001 4.25034 4.28378 4.29554 4.35272 4.38219 4.43273 4.54552 4.63415 4.65109 4.75106 4.79129 4.83148 4.84935 4.86944 4.94822 5.00702 5.04946 5.06669 5.11054 5.16948 5.21920 5.27318 5.35745 5.46138 5.52642 5.77229 5.99626 6.22286 6.52700 7.09703 7.09982 7.10176 7.86494 8.05763 9.20169 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.002427 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.466270 B =11532.792263 C =12015.639170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.168 3.832 4 N -0.752 5.752 5 C -0.231 4.231 6 H 0.054 0.946 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.248 1.248 13 C -0.123 4.123 14 C 0.109 3.891 15 N -0.617 5.617 16 C 0.540 3.460 17 O -0.580 6.580 18 C -0.100 4.100 19 H 0.109 0.891 20 C -0.097 4.097 21 C -0.067 4.067 22 C 0.167 3.833 23 N -0.541 5.541 24 C 0.281 3.719 25 N -0.540 5.540 26 C 0.151 3.849 27 C -0.177 4.177 28 C -0.050 4.050 29 C 0.115 3.885 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.014 0.986 35 H 0.368 0.632 36 H 0.257 0.743 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.217 0.783 46 H 0.197 0.803 47 H 0.110 0.890 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -22.604 16.998 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.042 3.958 4 N -0.398 5.398 5 C -0.362 4.362 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.637 5.637 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.172 1.172 13 C -0.162 4.162 14 C -0.013 4.013 15 N -0.349 5.349 16 C 0.330 3.670 17 O -0.460 6.460 18 C -0.122 4.122 19 H 0.127 0.873 20 C -0.135 4.135 21 C -0.104 4.104 22 C 0.023 3.977 23 N -0.256 5.256 24 C -0.007 4.007 25 N -0.254 5.254 26 C -0.016 4.016 27 C -0.181 4.181 28 C -0.088 4.088 29 C -0.008 4.008 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.202 0.798 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.233 0.767 46 H 0.214 0.786 47 H 0.129 0.871 48 H 0.107 0.893 49 H 0.123 0.877 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.199 -22.804 17.774 28.937 hybrid contribution -0.492 0.398 -1.900 2.003 sum 0.707 -22.406 15.874 27.468 Atomic orbital electron populations 1.21824 0.91985 1.02701 1.02424 1.21605 0.97328 0.93611 0.95236 1.20845 0.95361 0.90426 0.89174 1.42664 1.59132 1.09721 1.28294 1.19018 1.23064 0.87789 1.06313 0.92816 1.25518 1.02846 0.96613 1.00778 1.69893 1.51074 1.11469 1.31258 0.85454 0.79266 0.79303 0.78082 1.20076 1.22708 1.17196 1.22704 1.01379 0.94666 0.97423 1.22431 0.99568 0.96636 0.82704 1.48921 1.33179 1.35066 1.17752 1.20484 0.77694 0.80203 0.88656 1.90694 1.50880 1.35398 1.69055 1.21327 0.98071 1.02668 0.90089 0.87304 1.21388 0.93482 1.02431 0.96248 1.20507 0.98763 1.01199 0.89954 1.21733 0.92456 0.91269 0.92214 1.68430 1.35371 1.20718 1.01058 1.25395 0.86148 0.88925 1.00209 1.68491 1.16612 1.16608 1.23654 1.23774 0.99196 0.91976 0.86644 1.21135 0.96708 1.01799 0.98495 1.20159 1.01204 0.99849 0.87587 1.22312 0.95530 0.87461 0.95507 0.91360 0.93857 0.89977 0.95055 0.96815 0.79791 0.93438 0.89489 0.92859 0.91243 0.88501 0.91066 0.90517 0.88274 0.88127 0.76699 0.78608 0.87141 0.89333 0.87665 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.05 71.98 0.58 -2.09 16 2 C -0.08 -1.76 0.67 -51.29 -0.03 -1.80 16 3 C 0.17 5.65 4.85 86.38 0.42 6.07 16 4 N -0.75 -32.65 4.92 -343.47 -1.69 -34.34 16 5 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 8 N -0.99 -62.71 13.97 21.65 0.30 -62.41 16 9 Si 0.95 43.98 27.74 68.60 1.90 45.88 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.25 -10.08 6.52 99.48 0.65 -9.44 16 13 C -0.12 -2.95 5.72 31.68 0.18 -2.77 16 14 C 0.11 2.18 7.08 86.61 0.61 2.80 16 15 N -0.62 -12.13 3.29 -810.08 -2.67 -14.80 16 16 C 0.54 11.59 6.90 87.66 0.61 12.19 16 17 O -0.58 -17.01 16.61 -3.05 -0.05 -17.06 16 18 C -0.10 -1.52 2.25 -11.50 -0.03 -1.54 16 19 H 0.11 1.42 6.47 -2.39 -0.02 1.40 16 20 C -0.10 -1.55 4.76 30.63 0.15 -1.40 16 21 C -0.07 -0.96 6.00 29.84 0.18 -0.79 16 22 C 0.17 2.82 6.63 42.34 0.28 3.10 16 23 N -0.54 -10.24 10.32 -188.29 -1.94 -12.18 16 24 C 0.28 4.62 12.29 180.94 2.22 6.85 16 25 N -0.54 -9.13 10.44 -199.94 -2.09 -11.21 16 26 C 0.15 2.00 10.94 84.83 0.93 2.92 16 27 C -0.18 -2.47 5.73 -19.90 -0.11 -2.59 16 28 C -0.05 -0.57 5.02 29.68 0.15 -0.42 16 29 C 0.11 1.92 5.98 86.53 0.52 2.44 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.08 6.74 -2.39 -0.02 1.07 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.01 0.51 8.11 -2.39 -0.02 0.49 16 35 H 0.37 15.08 4.04 -92.70 -0.37 14.70 16 36 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 37 H 0.09 1.97 7.86 -2.38 -0.02 1.95 16 38 H 0.05 1.58 7.84 -2.39 -0.02 1.56 16 39 H 0.07 1.60 7.82 -2.39 -0.02 1.59 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.26 8.10 -2.38 -0.02 1.24 16 42 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 47 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 49 H 0.11 1.16 7.68 -2.39 -0.02 1.14 16 50 H 0.08 1.35 6.42 -2.39 -0.02 1.34 16 Total: -1.00 -76.45 393.67 2.27 -74.18 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.51 Total: 24.23 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 7.99 Total: 7.70 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -8.09 Total: -134.93 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Total: -76.45 2.27 -74.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569671580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.202 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds